Wall clock time and date at job start Mon Mar 30 2020 06:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 103.00466 * 2 1 4 4 C 1.38999 * 120.07551 * 0.25233 * 3 2 1 5 5 C 1.38063 * 119.91584 * 180.27231 * 4 3 2 6 6 C 1.50703 * 119.95986 * 179.75096 * 5 4 3 7 7 C 1.38327 * 120.07955 * 359.47453 * 5 4 3 8 8 C 1.50704 * 119.91824 * 180.23065 * 7 5 4 9 9 C 1.38274 * 120.16219 * 0.25411 * 7 5 4 10 10 C 1.38102 * 120.08207 * 0.02562 * 9 7 5 11 11 C 1.50697 * 120.04447 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47257 * 265.00313 * 11 10 9 13 13 C 1.50692 * 109.47170 * 179.97438 * 12 11 10 14 14 H 1.08009 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99435 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47424 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47131 * 120.00268 * 17 15 13 20 20 H 1.48502 * 109.46913 * 240.00153 * 17 15 13 21 21 H 1.09001 * 109.47510 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46717 * 300.00358 * 1 2 3 23 23 H 1.09006 * 109.46680 * 59.99775 * 1 2 3 24 24 H 1.07992 * 120.04613 * 0.02998 * 4 3 2 25 25 H 1.09002 * 109.47152 * 269.72395 * 6 5 4 26 26 H 1.09001 * 109.46980 * 149.72495 * 6 5 4 27 27 H 1.09004 * 109.47113 * 29.72476 * 6 5 4 28 28 H 1.09007 * 109.46945 * 90.00219 * 8 7 5 29 29 H 1.08992 * 109.46905 * 209.99798 * 8 7 5 30 30 H 1.09001 * 109.47283 * 330.00640 * 8 7 5 31 31 H 1.07998 * 119.96088 * 179.97438 * 9 7 5 32 32 H 1.09004 * 109.47142 * 25.00049 * 11 10 9 33 33 H 1.09002 * 109.47275 * 145.00316 * 11 10 9 34 34 H 1.08998 * 109.47217 * 299.99733 * 12 11 10 35 35 H 1.09002 * 109.46975 * 59.99820 * 12 11 10 36 36 H 0.96998 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1952 2.6661 0.0053 5 6 1.5096 4.0105 -0.0004 6 6 0.4097 5.0407 -0.0003 7 6 2.8331 4.4130 -0.0004 8 6 3.1721 5.8814 -0.0014 9 6 3.8456 3.4714 0.0000 10 6 3.5388 2.1249 -0.0001 11 6 4.6430 1.0994 -0.0003 12 6 4.9312 0.6604 -1.4374 13 6 6.0358 -0.3646 -1.4375 14 1 6.4869 -0.6726 -0.5057 15 6 6.4706 -0.9095 -2.6272 16 7 5.9216 -0.5341 -3.7618 17 14 7.8394 -2.1806 -2.6273 18 1 8.2851 -2.4283 -1.2325 19 1 7.3389 -3.4469 -3.2199 20 1 8.9828 -1.6765 -3.4296 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.1618 2.3527 0.0099 25 1 0.1445 5.2891 -1.0280 26 1 0.7529 5.9386 0.5135 27 1 -0.4639 4.6394 0.5135 28 1 3.2537 6.2362 1.0261 29 1 4.1211 6.0348 -0.5151 30 1 2.3867 6.4353 -0.5157 31 1 4.8778 3.7893 -0.0004 32 1 5.5430 1.5345 0.4341 33 1 4.3364 0.2352 0.5891 34 1 4.0312 0.2252 -1.8718 35 1 5.2378 1.5246 -2.0267 36 1 6.2277 -0.9171 -4.5987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:09 Heat of formation + Delta-G solvation = -23.090628 kcal Electronic energy + Delta-G solvation = -15810.125892 eV Core-core repulsion = 13383.448808 eV Total energy + Delta-G solvation = -2426.677085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57304 -36.43155 -34.65348 -33.43769 -31.90917 -29.97225 -28.50151 -27.81788 -25.83230 -23.19874 -23.01529 -21.03232 -18.56562 -17.77059 -17.09049 -16.52928 -16.25688 -15.39560 -15.22990 -14.79910 -14.57793 -14.47767 -14.40513 -13.90485 -13.57230 -13.44494 -13.37221 -13.16006 -12.92613 -12.83586 -12.72415 -12.41141 -12.14755 -11.97235 -11.75012 -11.53247 -11.25836 -10.80996 -10.57188 -10.24843 -9.47270 -8.23383 -8.16478 -6.29664 0.29336 0.43574 0.69654 1.39004 1.39951 1.53477 1.64400 2.41335 2.69769 3.14434 3.84111 3.92808 4.01007 4.26751 4.27203 4.29266 4.40004 4.53443 4.59174 4.73586 4.80251 4.83912 4.85825 4.88807 4.90026 5.01486 5.13346 5.24662 5.31222 5.39708 5.48532 5.52276 5.70401 5.82366 5.86434 6.09135 6.24730 6.86024 7.38686 8.93874 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.006105 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.706982 B = 4584.976665 C = 5420.583742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.163 6.163 3 C -0.099 4.099 4 C -0.134 4.134 5 C -0.087 4.087 6 C -0.107 4.107 7 C -0.096 4.096 8 C -0.109 4.109 9 C -0.118 4.118 10 C -0.077 4.077 11 C -0.065 4.065 12 C 0.044 3.956 13 C -0.540 4.540 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.121 0.879 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.143 0.857 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.000 1.000 35 H -0.018 1.018 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 10.385 9.082 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.079 5.921 3 C -0.211 4.211 4 C -0.158 4.158 5 C -0.088 4.088 6 C -0.164 4.164 7 C -0.099 4.099 8 C -0.165 4.165 9 C -0.137 4.137 10 C -0.082 4.082 11 C -0.102 4.102 12 C 0.007 3.993 13 C -0.578 4.578 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.202 1.202 21 H 0.140 0.860 22 H 0.116 0.884 23 H 0.106 0.894 24 H 0.161 0.839 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.018 0.982 35 H 0.001 0.999 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.196 9.278 8.913 17.727 hybrid contribution 0.209 0.052 -0.461 0.509 sum -11.987 9.330 8.452 17.383 Atomic orbital electron populations 1.23761 0.92437 1.08153 1.06211 1.86266 1.08982 1.04405 1.92413 1.21693 0.96242 0.96584 1.06629 1.21254 0.98231 0.92629 1.03686 1.20023 0.95057 0.94173 0.99578 1.20845 0.95402 0.96934 1.03179 1.20132 0.92385 0.97190 1.00149 1.20843 1.02749 0.89601 1.03304 1.21046 0.99924 0.91510 1.01249 1.19884 0.93094 0.95423 0.99841 1.20528 0.95024 0.95850 0.98838 1.18811 0.95289 0.94250 0.90942 1.21670 1.19342 1.23633 0.93115 0.92394 1.25966 0.99506 0.99077 0.95081 1.70128 1.43888 1.44954 0.98364 0.85395 0.78582 0.78454 0.78599 1.18608 1.20278 1.20162 0.86025 0.88404 0.89382 0.83892 0.90365 0.89647 0.90454 0.89705 0.91653 0.89614 0.85727 0.92086 0.92333 0.98165 0.99913 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.15 113.37 1.04 -2.10 16 2 S -0.16 -5.96 20.47 -56.49 -1.16 -7.11 16 3 C -0.10 -3.70 6.11 22.62 0.14 -3.56 16 4 C -0.13 -4.00 9.01 22.41 0.20 -3.80 16 5 C -0.09 -2.29 5.88 -19.88 -0.12 -2.41 16 6 C -0.11 -1.81 9.19 71.24 0.65 -1.16 16 7 C -0.10 -2.75 5.88 -19.83 -0.12 -2.87 16 8 C -0.11 -2.17 9.19 71.24 0.65 -1.52 16 9 C -0.12 -4.20 9.33 22.25 0.21 -3.99 16 10 C -0.08 -3.17 5.15 -19.73 -0.10 -3.28 16 11 C -0.06 -3.04 4.75 29.85 0.14 -2.90 16 12 C 0.04 2.53 4.95 29.85 0.15 2.68 16 13 C -0.54 -32.49 9.11 25.60 0.23 -32.26 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 0.07 5.46 84.66 0.46 0.54 16 16 N -0.93 -59.16 13.29 21.45 0.28 -58.88 16 17 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 18 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.10 1.82 7.74 -2.39 -0.02 1.80 16 23 H 0.09 1.87 7.76 -2.39 -0.02 1.85 16 24 H 0.14 3.38 5.88 -2.91 -0.02 3.36 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.16 6.69 -2.39 -0.02 1.14 16 27 H 0.08 1.09 8.08 -2.38 -0.02 1.07 16 28 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.09 1.37 6.69 -2.39 -0.02 1.35 16 31 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.06 2.74 8.05 -2.39 -0.02 2.72 16 33 H 0.06 2.77 7.01 -2.39 -0.02 2.75 16 34 H 0.00 0.00 7.73 -2.39 -0.02 -0.02 16 35 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 36 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.22 308.19 5.75 -66.47 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.05 Total: 8.12 kcal Atomic # 6 Polarization: -60.16 SS G_CDS: 3.54 Total: -56.62 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.28 Total: -58.88 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -1.16 Total: -7.11 kcal Total: -72.22 5.75 -66.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.384 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds