Wall clock time and date at job start Mon Mar 30 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32915 * 125.20149 * 2 1 4 4 C 1.39217 * 115.69867 * 179.78772 * 3 2 1 5 5 C 1.34631 * 113.66298 * 0.48940 * 4 3 2 6 6 S 1.75729 * 125.21333 * 180.29612 * 2 1 3 7 7 C 1.51408 * 124.78074 * 179.72090 * 5 4 3 8 8 C 1.53157 * 108.70831 * 16.32283 * 7 5 4 9 9 C 1.53159 * 108.96463 * 310.33815 * 8 7 5 10 10 C 1.53003 * 109.49903 * 190.50239 * 9 8 7 11 11 C 1.52997 * 109.49533 * 310.57085 * 9 8 7 12 12 C 1.52277 * 123.50415 * 180.20981 * 4 3 2 13 13 H 1.08997 * 109.58562 * 77.98581 * 12 4 3 14 14 C 1.50700 * 109.69731 * 317.64163 * 12 4 3 15 15 H 1.08000 * 120.00236 * 305.79904 * 14 12 4 16 16 C 1.37877 * 120.00102 * 125.79639 * 14 12 4 17 17 N 1.31521 * 119.99926 * 6.36288 * 16 14 12 18 18 Si 1.86795 * 120.00195 * 186.36366 * 16 14 12 19 19 H 1.48496 * 109.47203 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47106 * 120.00213 * 18 16 14 21 21 H 1.48506 * 109.47244 * 239.99951 * 18 16 14 22 22 H 1.09007 * 109.46561 * 179.72522 * 1 2 3 23 23 H 1.08997 * 109.47310 * 59.72742 * 1 2 3 24 24 H 1.08992 * 109.47499 * 299.71971 * 1 2 3 25 25 H 1.07994 * 122.15102 * 359.97438 * 3 2 1 26 26 H 1.09009 * 109.59788 * 136.09113 * 7 5 4 27 27 H 1.09008 * 109.59958 * 256.39445 * 7 5 4 28 28 H 1.09002 * 109.55693 * 70.17493 * 8 7 5 29 29 H 1.09002 * 109.56303 * 190.48757 * 8 7 5 30 30 H 1.09004 * 109.46897 * 59.99659 * 10 9 8 31 31 H 1.09002 * 109.46619 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47025 * 300.00054 * 10 9 8 33 33 H 1.09005 * 109.47587 * 59.99754 * 11 9 8 34 34 H 1.09000 * 109.47238 * 179.97438 * 11 9 8 35 35 H 1.09009 * 109.47188 * 299.99855 * 11 9 8 36 36 H 0.97000 * 120.00102 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2732 1.0861 0.0000 4 6 3.6463 0.8562 0.0046 5 6 3.9757 -0.4491 -0.0021 6 16 2.5203 -1.4357 -0.0074 7 6 5.3927 -0.9823 -0.0052 8 6 6.3429 0.1456 0.4080 9 6 6.0312 1.3904 -0.4282 10 6 7.1294 2.4348 -0.2182 11 6 5.9660 1.0082 -1.9082 12 6 4.6849 1.9698 0.0101 13 1 4.7742 2.3813 1.0154 14 6 4.2682 3.0578 -0.9458 15 1 4.0441 2.8163 -1.9743 16 6 4.1728 4.3615 -0.5073 17 7 4.5646 4.6768 0.7080 18 14 3.4873 5.6799 -1.6391 19 1 3.1213 5.0713 -2.9433 20 1 2.2817 6.2863 -1.0195 21 1 4.5146 6.7304 -1.8546 22 1 -0.3633 -1.0277 -0.0049 23 1 -0.3634 0.5180 -0.8875 24 1 -0.3634 0.5094 0.8924 25 1 1.8574 2.0828 -0.0004 26 1 5.4746 -1.8071 0.7028 27 1 5.6496 -1.3321 -1.0052 28 1 6.2029 0.3718 1.4650 29 1 7.3736 -0.1629 0.2328 30 1 8.0889 2.0204 -0.5277 31 1 6.9072 3.3203 -0.8138 32 1 7.1746 2.7076 0.8361 33 1 5.1827 0.2650 -2.0575 34 1 5.7437 1.8942 -2.5028 35 1 6.9249 0.5929 -2.2188 36 1 4.4972 5.5939 1.0167 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260393786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:00 Heat of formation + Delta-G solvation = 2.794553 kcal Electronic energy + Delta-G solvation = -16979.574808 eV Core-core repulsion = 14554.020188 eV Total energy + Delta-G solvation = -2425.554619 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.03406 -35.71681 -32.97786 -31.58337 -30.17063 -27.13956 -26.31347 -25.19607 -24.22849 -21.51308 -20.93669 -18.22692 -16.92198 -16.08015 -15.90655 -14.61768 -14.42003 -13.86311 -13.48999 -13.28788 -13.06273 -12.58860 -12.53744 -12.03377 -11.82711 -11.53765 -11.27058 -11.05991 -10.97967 -10.90268 -10.67280 -10.59612 -10.49185 -10.19956 -9.92595 -9.76562 -9.41624 -9.02468 -8.82498 -8.43437 -7.62972 -7.28977 -6.04848 -4.05647 1.83075 2.39233 2.77692 3.26295 3.35767 3.39822 3.74855 4.41571 5.23515 5.39521 5.55513 5.65128 5.68167 5.70596 5.87593 6.05881 6.13067 6.19420 6.21319 6.32382 6.47521 6.53831 6.63306 6.70785 6.78024 6.79277 6.98337 6.99862 7.12643 7.21572 7.38143 7.48493 7.56940 7.76377 7.78691 7.88770 8.42215 9.03846 9.55710 11.02543 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.010632 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.159780 B = 2633.007380 C = 3716.607856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.202 4.202 3 C -0.096 4.096 4 C -0.047 4.047 5 C -0.208 4.208 6 S 0.008 5.992 7 C -0.034 4.034 8 C -0.107 4.107 9 C -0.053 4.053 10 C -0.116 4.116 11 C -0.129 4.129 12 C 0.095 3.905 13 H 0.081 0.919 14 C -0.494 4.494 15 H 0.057 0.943 16 C 0.069 3.931 17 N -0.888 5.888 18 Si 0.883 3.117 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -8.344 -0.787 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.318 4.318 3 C -0.126 4.126 4 C -0.059 4.059 5 C -0.323 4.323 6 S 0.273 5.727 7 C -0.074 4.074 8 C -0.146 4.146 9 C -0.053 4.053 10 C -0.173 4.173 11 C -0.186 4.186 12 C 0.074 3.926 13 H 0.099 0.901 14 C -0.532 4.532 15 H 0.075 0.925 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.711 3.289 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.155 0.845 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.616 -9.764 -0.672 9.920 hybrid contribution -0.236 2.239 -0.589 2.327 sum -1.852 -7.525 -1.261 7.852 Atomic orbital electron populations 1.20185 0.88939 1.01609 1.02269 1.23974 0.98812 0.95345 1.13657 1.20108 0.93286 0.98853 1.00366 1.20646 0.95391 0.94144 0.95673 1.24515 0.96646 0.95588 1.15574 1.83552 0.99102 1.11684 1.78408 1.20146 0.89140 0.97423 1.00681 1.21718 0.97005 0.95563 1.00268 1.20606 0.97875 0.92760 0.94058 1.21566 0.95098 0.99206 1.01412 1.21834 0.98642 1.01166 0.96976 1.18176 0.85992 0.88633 0.99784 0.90075 1.20938 1.45185 0.91003 0.96077 0.92527 1.24939 0.94913 0.98521 0.94978 1.69911 1.46708 1.18833 1.17093 0.86684 0.78930 0.82054 0.81277 1.19719 1.21040 1.21115 0.92405 0.91335 0.91358 0.84524 0.92455 0.91405 0.92307 0.92831 0.95733 0.91677 0.93563 0.93554 0.91868 0.95461 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.37 36.01 0.37 -0.65 16 2 C -0.20 -3.71 6.49 -36.15 -0.23 -3.95 16 3 C -0.10 -2.03 9.28 -41.06 -0.38 -2.41 16 4 C -0.05 -1.04 4.93 -104.75 -0.52 -1.55 16 5 C -0.21 -4.08 5.53 -35.24 -0.20 -4.27 16 6 S 0.01 0.14 23.30 -107.50 -2.50 -2.36 16 7 C -0.03 -0.59 5.62 -27.45 -0.15 -0.75 16 8 C -0.11 -1.91 4.91 -26.57 -0.13 -2.04 16 9 C -0.05 -1.08 0.55 -154.44 -0.08 -1.16 16 10 C -0.12 -2.37 8.31 37.16 0.31 -2.07 16 11 C -0.13 -2.54 7.25 37.16 0.27 -2.27 16 12 C 0.09 2.23 1.94 -92.15 -0.18 2.05 16 13 H 0.08 2.17 6.97 -51.93 -0.36 1.81 16 14 C -0.49 -12.50 5.71 -34.44 -0.20 -12.70 16 15 H 0.06 1.48 6.90 -52.49 -0.36 1.11 16 16 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 17 N -0.89 -24.07 12.65 55.43 0.70 -23.37 16 18 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.14 3.03 7.88 -52.49 -0.41 2.62 16 26 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 27 H 0.07 1.12 6.96 -51.92 -0.36 0.75 16 28 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 29 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 1.48 7.53 -51.93 -0.39 1.08 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.92 5.54 -51.93 -0.29 0.63 16 34 H 0.06 1.33 6.55 -51.93 -0.34 0.99 16 35 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -26.28 293.00 -9.08 -35.36 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.45 Total: 0.58 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: -1.22 Total: -30.08 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.70 Total: -23.37 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.50 Total: -2.36 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.28 -9.08 -35.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.153 kcal (2) G-P(sol) polarization free energy of solvation -26.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds