Wall clock time and date at job start Mon Mar 30 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32915 * 125.20149 * 2 1 4 4 C 1.39217 * 115.69867 * 179.78772 * 3 2 1 5 5 C 1.34631 * 113.66298 * 0.48940 * 4 3 2 6 6 S 1.75729 * 125.21333 * 180.29612 * 2 1 3 7 7 C 1.51408 * 124.78074 * 179.72090 * 5 4 3 8 8 C 1.53157 * 108.70831 * 16.32283 * 7 5 4 9 9 C 1.53159 * 108.96463 * 310.33815 * 8 7 5 10 10 C 1.53003 * 109.49903 * 190.50239 * 9 8 7 11 11 C 1.52997 * 109.49533 * 310.57085 * 9 8 7 12 12 C 1.52277 * 123.50415 * 180.20981 * 4 3 2 13 13 H 1.08997 * 109.58562 * 77.98581 * 12 4 3 14 14 C 1.50700 * 109.69731 * 317.64163 * 12 4 3 15 15 H 1.08000 * 120.00236 * 305.79904 * 14 12 4 16 16 C 1.37877 * 120.00102 * 125.79639 * 14 12 4 17 17 N 1.31521 * 119.99926 * 6.36288 * 16 14 12 18 18 Si 1.86795 * 120.00195 * 186.36366 * 16 14 12 19 19 H 1.48496 * 109.47203 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47106 * 120.00213 * 18 16 14 21 21 H 1.48506 * 109.47244 * 239.99951 * 18 16 14 22 22 H 1.09007 * 109.46561 * 179.72522 * 1 2 3 23 23 H 1.08997 * 109.47310 * 59.72742 * 1 2 3 24 24 H 1.08992 * 109.47499 * 299.71971 * 1 2 3 25 25 H 1.07994 * 122.15102 * 359.97438 * 3 2 1 26 26 H 1.09009 * 109.59788 * 136.09113 * 7 5 4 27 27 H 1.09008 * 109.59958 * 256.39445 * 7 5 4 28 28 H 1.09002 * 109.55693 * 70.17493 * 8 7 5 29 29 H 1.09002 * 109.56303 * 190.48757 * 8 7 5 30 30 H 1.09004 * 109.46897 * 59.99659 * 10 9 8 31 31 H 1.09002 * 109.46619 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47025 * 300.00054 * 10 9 8 33 33 H 1.09005 * 109.47587 * 59.99754 * 11 9 8 34 34 H 1.09000 * 109.47238 * 179.97438 * 11 9 8 35 35 H 1.09009 * 109.47188 * 299.99855 * 11 9 8 36 36 H 0.97000 * 120.00102 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2732 1.0861 0.0000 4 6 3.6463 0.8562 0.0046 5 6 3.9757 -0.4491 -0.0021 6 16 2.5203 -1.4357 -0.0074 7 6 5.3927 -0.9823 -0.0052 8 6 6.3429 0.1456 0.4080 9 6 6.0312 1.3904 -0.4282 10 6 7.1294 2.4348 -0.2182 11 6 5.9660 1.0082 -1.9082 12 6 4.6849 1.9698 0.0101 13 1 4.7742 2.3813 1.0154 14 6 4.2682 3.0578 -0.9458 15 1 4.0441 2.8163 -1.9743 16 6 4.1728 4.3615 -0.5073 17 7 4.5646 4.6768 0.7080 18 14 3.4873 5.6799 -1.6391 19 1 3.1213 5.0713 -2.9433 20 1 2.2817 6.2863 -1.0195 21 1 4.5146 6.7304 -1.8546 22 1 -0.3633 -1.0277 -0.0049 23 1 -0.3634 0.5180 -0.8875 24 1 -0.3634 0.5094 0.8924 25 1 1.8574 2.0828 -0.0004 26 1 5.4746 -1.8071 0.7028 27 1 5.6496 -1.3321 -1.0052 28 1 6.2029 0.3718 1.4650 29 1 7.3736 -0.1629 0.2328 30 1 8.0889 2.0204 -0.5277 31 1 6.9072 3.3203 -0.8138 32 1 7.1746 2.7076 0.8361 33 1 5.1827 0.2650 -2.0575 34 1 5.7437 1.8942 -2.5028 35 1 6.9249 0.5929 -2.2188 36 1 4.4972 5.5939 1.0167 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:59 Heat of formation + Delta-G solvation = -8.786151 kcal Electronic energy + Delta-G solvation = -16980.076985 eV Core-core repulsion = 14554.020188 eV Total energy + Delta-G solvation = -2426.056796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62522 -37.24883 -34.85050 -33.09823 -31.71671 -28.82862 -27.91342 -26.69217 -26.04359 -23.08903 -22.46228 -19.81801 -18.65997 -17.82043 -17.49087 -16.48044 -15.94336 -15.37987 -15.03888 -14.84952 -14.48634 -14.19444 -13.98177 -13.69354 -13.34430 -12.98315 -12.91027 -12.84830 -12.63074 -12.54921 -12.31734 -12.17097 -12.09376 -11.80341 -11.57087 -11.40209 -11.09835 -10.84198 -10.56115 -10.33789 -9.09453 -8.83562 -8.04135 -6.09195 0.31020 0.93710 1.24135 1.37526 1.41599 1.50647 2.11592 2.47006 3.24457 3.98660 4.12230 4.23059 4.26466 4.47536 4.52483 4.66189 4.73333 4.76045 4.81714 4.91446 5.04508 5.08186 5.12783 5.16680 5.21680 5.26002 5.33810 5.40984 5.53173 5.56949 5.66101 5.76282 5.84332 5.91374 5.98403 6.15222 6.50149 7.04218 7.53039 9.02095 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.010632 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.159780 B = 2633.007380 C = 3716.607856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.196 4.196 3 C -0.135 4.135 4 C -0.082 4.082 5 C -0.213 4.213 6 S 0.071 5.929 7 C -0.034 4.034 8 C -0.101 4.101 9 C -0.056 4.056 10 C -0.107 4.107 11 C -0.119 4.119 12 C 0.096 3.904 13 H 0.037 0.963 14 C -0.487 4.487 15 H 0.044 0.956 16 C 0.024 3.976 17 N -0.919 5.919 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -11.025 -1.544 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.312 4.312 3 C -0.165 4.165 4 C -0.093 4.093 5 C -0.329 4.329 6 S 0.335 5.665 7 C -0.073 4.073 8 C -0.140 4.140 9 C -0.056 4.056 10 C -0.165 4.165 11 C -0.176 4.176 12 C 0.075 3.925 13 H 0.055 0.945 14 C -0.525 4.525 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.559 5.559 18 Si 0.761 3.239 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.711 -12.448 -1.442 12.648 hybrid contribution -0.260 2.965 -0.343 2.996 sum -1.971 -9.483 -1.785 9.849 Atomic orbital electron populations 1.20336 0.86151 1.03465 1.03194 1.24487 1.00868 0.95165 1.10711 1.20017 0.93753 0.98785 1.03939 1.20481 0.95299 0.94832 0.98671 1.24889 0.99024 0.95392 1.13624 1.83275 0.96802 1.09530 1.76843 1.20270 0.87192 0.97554 1.02311 1.21647 0.99006 0.94494 0.98865 1.20567 0.95888 0.93913 0.95268 1.21471 0.96888 0.98368 0.99738 1.21710 1.00085 1.00118 0.95706 1.17975 0.88563 0.89096 0.96832 0.94530 1.21060 1.43932 0.91821 0.95730 0.93761 1.25499 0.95649 1.00261 0.96038 1.70032 1.48531 1.18846 1.18494 0.85879 0.78222 0.80029 0.79797 1.19512 1.21040 1.20977 0.90001 0.90441 0.90391 0.87091 0.89889 0.89739 0.93596 0.89853 0.92508 0.94724 0.95268 0.93733 0.94267 0.92524 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 10.37 71.24 0.74 -1.18 16 2 C -0.20 -6.92 6.49 24.51 0.16 -6.76 16 3 C -0.13 -5.83 9.28 21.33 0.20 -5.63 16 4 C -0.08 -3.62 4.93 -19.95 -0.10 -3.72 16 5 C -0.21 -7.99 5.53 25.08 0.14 -7.85 16 6 S 0.07 2.27 23.30 -56.49 -1.32 0.96 16 7 C -0.03 -1.06 5.62 30.13 0.17 -0.89 16 8 C -0.10 -3.42 4.91 30.70 0.15 -3.27 16 9 C -0.06 -2.28 0.55 -52.14 -0.03 -2.31 16 10 C -0.11 -4.44 8.31 71.98 0.60 -3.85 16 11 C -0.12 -4.52 7.25 71.98 0.52 -4.00 16 12 C 0.10 4.68 1.94 -11.79 -0.02 4.66 16 13 H 0.04 2.09 6.97 -2.39 -0.02 2.07 16 14 C -0.49 -25.74 5.71 25.60 0.15 -25.60 16 15 H 0.04 2.40 6.90 -2.91 -0.02 2.38 16 16 C 0.02 1.31 5.45 84.65 0.46 1.77 16 17 N -0.92 -52.49 12.65 21.45 0.27 -52.22 16 18 Si 0.93 43.56 29.54 68.60 2.03 45.58 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.11 5.23 7.88 -2.91 -0.02 5.21 16 26 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.08 2.41 6.96 -2.38 -0.02 2.39 16 28 H 0.05 1.66 8.11 -2.39 -0.02 1.64 16 29 H 0.08 2.34 8.11 -2.39 -0.02 2.32 16 30 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.03 1.60 7.53 -2.39 -0.02 1.59 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.68 5.54 -2.38 -0.01 1.67 16 34 H 0.04 1.65 6.55 -2.39 -0.02 1.63 16 35 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -59.00 293.00 5.17 -53.83 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.05 Total: 10.48 kcal Atomic # 6 Polarization: -61.76 SS G_CDS: 3.13 Total: -58.63 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.27 Total: -52.22 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.32 Total: 0.96 kcal Total: -59.00 5.17 -53.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.045 kcal (2) G-P(sol) polarization free energy of solvation -58.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds