Wall clock time and date at job start Mon Mar 30 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00192 * 2 1 4 4 H 1.08999 * 109.47240 * 29.99498 * 3 2 1 5 5 C 1.50693 * 109.47529 * 149.99691 * 3 2 1 6 6 H 1.08001 * 120.00332 * 119.99416 * 5 3 2 7 7 C 1.37877 * 119.99877 * 300.00182 * 5 3 2 8 8 N 1.31518 * 120.00238 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47207 * 89.99416 * 9 7 5 11 11 H 1.48499 * 109.46974 * 209.99632 * 9 7 5 12 12 H 1.48503 * 109.46842 * 329.99554 * 9 7 5 13 13 C 1.50698 * 109.46710 * 269.99666 * 3 2 1 14 14 C 1.38243 * 119.97206 * 334.97459 * 13 3 2 15 15 C 1.38204 * 120.11304 * 179.72122 * 14 13 3 16 16 C 1.38239 * 120.11725 * 0.63008 * 15 14 13 17 17 C 1.38663 * 120.06361 * 359.44641 * 16 15 14 18 18 C 1.38662 * 119.96597 * 155.00161 * 13 3 2 19 19 O 1.36108 * 119.40135 * 359.80906 * 18 13 3 20 20 C 1.43171 * 116.69383 * 162.68491 * 19 18 13 21 21 C 1.53466 * 108.24044 * 46.28891 * 20 19 18 22 22 O 1.36107 * 119.40583 * 179.97438 * 17 16 15 23 23 H 1.09001 * 109.47126 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47361 * 300.00677 * 1 2 3 25 25 H 1.09004 * 109.46879 * 60.00428 * 1 2 3 26 26 H 0.96995 * 120.00025 * 180.02562 * 8 7 5 27 27 H 1.07997 * 119.93643 * 0.02562 * 14 13 3 28 28 H 1.07998 * 119.94113 * 180.34028 * 15 14 13 29 29 H 1.08002 * 119.97177 * 179.73130 * 16 15 14 30 30 H 1.08995 * 109.71452 * 165.97670 * 20 19 18 31 31 H 1.09008 * 109.70944 * 286.56213 * 20 19 18 32 32 H 1.09004 * 109.70510 * 59.95401 * 21 20 19 33 33 H 1.08997 * 109.71048 * 180.53269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 3.3385 1.2640 0.7104 6 1 4.2406 1.5419 0.1856 7 6 3.4023 0.8709 2.0305 8 7 2.3039 0.5328 2.6698 9 14 5.0489 0.8202 2.9114 10 1 5.3100 2.1357 3.5488 11 1 5.0205 -0.2378 3.9531 12 1 6.1250 0.5222 1.9324 13 6 2.2146 1.7642 -1.4208 14 6 2.3549 0.8337 -2.4336 15 6 2.5367 1.2513 -3.7385 16 6 2.5919 2.6006 -4.0337 17 6 2.4535 3.5392 -3.0224 18 6 2.2623 3.1193 -1.7110 19 8 2.1193 4.0237 -0.7040 20 6 2.5489 5.3621 -0.9758 21 6 1.9992 5.7738 -2.3482 22 8 2.5105 4.8643 -3.3281 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 2.3487 0.2567 3.5985 27 1 2.3174 -0.2211 -2.2053 28 1 2.6405 0.5220 -4.5282 29 1 2.7384 2.9242 -5.0536 30 1 2.1644 6.0346 -0.2090 31 1 3.6382 5.4032 -0.9880 32 1 0.9102 5.7267 -2.3371 33 1 2.3207 6.7883 -2.5837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:14 Heat of formation + Delta-G solvation = -88.741340 kcal Electronic energy + Delta-G solvation = -18820.007206 eV Core-core repulsion = 15811.897327 eV Total energy + Delta-G solvation = -3008.109879 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73725 -37.67572 -36.74390 -35.84897 -32.50108 -30.80204 -30.63232 -27.88671 -27.09590 -24.97301 -24.28599 -23.20942 -20.63270 -20.27824 -18.04848 -16.92908 -16.66063 -16.49718 -14.98361 -14.81600 -14.65134 -14.49101 -14.21361 -13.86929 -13.66602 -13.50214 -13.18090 -12.69658 -12.24959 -11.84072 -11.39352 -11.14803 -10.92498 -10.84671 -10.66021 -10.59056 -10.26014 -10.02979 -9.65858 -9.35134 -8.54551 -8.07046 -7.72977 -7.48673 -6.01773 -4.11642 1.92644 1.95822 3.31318 3.37690 3.42366 3.43645 3.73575 4.33074 4.48164 4.55726 5.02604 5.04889 5.11980 5.22359 5.45880 5.61608 5.71482 5.71971 5.89091 6.03426 6.12380 6.35456 6.49831 6.54707 6.71236 6.79710 6.88777 7.06224 7.25916 7.35665 7.50784 7.89623 7.99088 8.24705 8.82203 9.04216 9.56298 11.06095 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.008631 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.301988 B = 3243.266173 C = 3783.799868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.368 6.368 3 C 0.257 3.743 4 H 0.035 0.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.078 3.922 8 N -0.865 5.865 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C -0.062 4.062 14 C -0.104 4.104 15 C -0.125 4.125 16 C -0.137 4.137 17 C 0.035 3.965 18 C 0.052 3.948 19 O -0.288 6.288 20 C 0.020 3.980 21 C 0.022 3.978 22 O -0.315 6.315 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.011 0.989 26 H 0.261 0.739 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 7.121 -8.924 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.201 3.799 4 H 0.053 0.947 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.127 4.127 8 N -0.502 5.502 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C -0.063 4.063 14 C -0.122 4.122 15 C -0.143 4.143 16 C -0.156 4.156 17 C -0.009 4.009 18 C 0.007 3.993 19 O -0.201 6.201 20 C -0.056 4.056 21 C -0.054 4.054 22 O -0.230 6.230 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.862 6.949 -8.729 11.311 hybrid contribution 0.660 0.464 0.544 0.973 sum -1.202 7.413 -8.185 11.108 Atomic orbital electron populations 1.22411 0.85632 0.99811 0.97876 1.88130 1.15710 1.30807 1.93950 1.18565 0.94726 0.82061 0.84566 0.94713 1.20870 0.91987 1.46616 0.95242 0.92091 1.25005 0.96506 0.93997 0.97212 1.69997 1.27031 1.42686 1.10493 0.86559 0.84118 0.77683 0.79400 1.20609 1.21044 1.19696 1.20704 0.96785 0.88833 1.00015 1.20879 0.99868 1.00326 0.91133 1.20837 1.02295 0.94288 0.96868 1.20173 1.06510 0.91626 0.97284 1.18835 1.06225 0.83315 0.92503 1.18753 1.04935 0.90189 0.85419 1.86470 1.79948 1.17652 1.36077 1.23519 1.00469 0.84048 0.97592 1.23538 0.99255 0.93605 0.89021 1.86209 1.79727 1.13628 1.43441 0.92288 0.94921 0.97006 0.92923 0.84752 0.85971 0.85971 0.86712 0.90922 0.91073 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.81 101.05 1.09 1.97 16 2 O -0.37 -9.60 8.57 -35.23 -0.30 -9.91 16 3 C 0.26 6.80 1.88 -29.04 -0.05 6.75 16 4 H 0.04 1.01 7.30 -51.93 -0.38 0.63 16 5 C -0.51 -14.58 8.78 -34.44 -0.30 -14.88 16 6 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 7 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 8 N -0.87 -25.33 12.84 55.43 0.71 -24.61 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 13 C -0.06 -1.44 4.97 -104.46 -0.52 -1.96 16 14 C -0.10 -2.13 9.35 -39.59 -0.37 -2.50 16 15 C -0.12 -2.14 10.04 -39.59 -0.40 -2.54 16 16 C -0.14 -2.37 9.96 -39.42 -0.39 -2.76 16 17 C 0.04 0.68 6.49 -39.13 -0.25 0.42 16 18 C 0.05 1.12 6.47 -39.14 -0.25 0.87 16 19 O -0.29 -6.02 9.50 -32.86 -0.31 -6.34 16 20 C 0.02 0.30 7.26 37.40 0.27 0.57 16 21 C 0.02 0.28 7.26 37.40 0.27 0.56 16 22 O -0.31 -5.29 10.42 -32.86 -0.34 -5.63 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.13 2.75 7.34 -52.49 -0.39 2.37 16 28 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 284.60 15.07 4.29 4.29 Total: -1.00 -32.31 284.60 -6.09 -38.39 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.11 Total: -1.42 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.00 Total: -11.39 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.71 Total: -24.61 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.96 Total: -21.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.31 -6.09 -38.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.347 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds