Wall clock time and date at job start Mon Mar 30 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00192 * 2 1 4 4 H 1.08999 * 109.47240 * 29.99498 * 3 2 1 5 5 C 1.50693 * 109.47529 * 149.99691 * 3 2 1 6 6 H 1.08001 * 120.00332 * 119.99416 * 5 3 2 7 7 C 1.37877 * 119.99877 * 300.00182 * 5 3 2 8 8 N 1.31518 * 120.00238 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47207 * 89.99416 * 9 7 5 11 11 H 1.48499 * 109.46974 * 209.99632 * 9 7 5 12 12 H 1.48503 * 109.46842 * 329.99554 * 9 7 5 13 13 C 1.50698 * 109.46710 * 269.99666 * 3 2 1 14 14 C 1.38243 * 119.97206 * 334.97459 * 13 3 2 15 15 C 1.38204 * 120.11304 * 179.72122 * 14 13 3 16 16 C 1.38239 * 120.11725 * 0.63008 * 15 14 13 17 17 C 1.38663 * 120.06361 * 359.44641 * 16 15 14 18 18 C 1.38662 * 119.96597 * 155.00161 * 13 3 2 19 19 O 1.36108 * 119.40135 * 359.80906 * 18 13 3 20 20 C 1.43171 * 116.69383 * 162.68491 * 19 18 13 21 21 C 1.53466 * 108.24044 * 46.28891 * 20 19 18 22 22 O 1.36107 * 119.40583 * 179.97438 * 17 16 15 23 23 H 1.09001 * 109.47126 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47361 * 300.00677 * 1 2 3 25 25 H 1.09004 * 109.46879 * 60.00428 * 1 2 3 26 26 H 0.96995 * 120.00025 * 180.02562 * 8 7 5 27 27 H 1.07997 * 119.93643 * 0.02562 * 14 13 3 28 28 H 1.07998 * 119.94113 * 180.34028 * 15 14 13 29 29 H 1.08002 * 119.97177 * 179.73130 * 16 15 14 30 30 H 1.08995 * 109.71452 * 165.97670 * 20 19 18 31 31 H 1.09008 * 109.70944 * 286.56213 * 20 19 18 32 32 H 1.09004 * 109.70510 * 59.95401 * 21 20 19 33 33 H 1.08997 * 109.71048 * 180.53269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 3.3385 1.2640 0.7104 6 1 4.2406 1.5419 0.1856 7 6 3.4023 0.8709 2.0305 8 7 2.3039 0.5328 2.6698 9 14 5.0489 0.8202 2.9114 10 1 5.3100 2.1357 3.5488 11 1 5.0205 -0.2378 3.9531 12 1 6.1250 0.5222 1.9324 13 6 2.2146 1.7642 -1.4208 14 6 2.3549 0.8337 -2.4336 15 6 2.5367 1.2513 -3.7385 16 6 2.5919 2.6006 -4.0337 17 6 2.4535 3.5392 -3.0224 18 6 2.2623 3.1193 -1.7110 19 8 2.1193 4.0237 -0.7040 20 6 2.5489 5.3621 -0.9758 21 6 1.9992 5.7738 -2.3482 22 8 2.5105 4.8643 -3.3281 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 2.3487 0.2567 3.5985 27 1 2.3174 -0.2211 -2.2053 28 1 2.6405 0.5220 -4.5282 29 1 2.7384 2.9242 -5.0536 30 1 2.1644 6.0346 -0.2090 31 1 3.6382 5.4032 -0.9880 32 1 0.9102 5.7267 -2.3371 33 1 2.3207 6.7883 -2.5837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:14 Heat of formation + Delta-G solvation = -110.319724 kcal Electronic energy + Delta-G solvation = -18820.942915 eV Core-core repulsion = 15811.897327 eV Total energy + Delta-G solvation = -3009.045588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11773 -39.28102 -38.15301 -37.57273 -34.62790 -32.35160 -32.00692 -29.25505 -28.97951 -26.88333 -25.58050 -25.05531 -22.18117 -21.71517 -19.45672 -18.77521 -18.27798 -17.97909 -16.65500 -16.51360 -16.27061 -16.03967 -15.72330 -15.39326 -15.31553 -15.11330 -14.62042 -14.15064 -13.90457 -13.62054 -13.01443 -12.84715 -12.68957 -12.55263 -12.09667 -12.00931 -11.88800 -11.86202 -11.40124 -11.28570 -10.66091 -10.01043 -9.29533 -8.94783 -8.15814 -6.34725 0.45198 0.46177 1.38368 1.40271 1.51405 2.17806 2.39080 2.45048 2.89208 3.01043 3.39088 3.70142 3.88261 3.98268 4.12917 4.26739 4.37079 4.45670 4.52880 4.60959 4.64483 4.71541 4.77952 4.90367 5.01206 5.12855 5.29253 5.42794 5.63783 5.76374 5.83403 6.08314 6.16214 6.58253 6.67533 7.05246 7.37420 8.91297 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.008631 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.301988 B = 3243.266173 C = 3783.799868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.390 6.390 3 C 0.267 3.733 4 H -0.005 1.005 5 C -0.531 4.531 6 H 0.049 0.951 7 C 0.028 3.972 8 N -0.897 5.897 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.269 1.269 13 C -0.099 4.099 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.034 3.966 18 C 0.033 3.967 19 O -0.325 6.325 20 C 0.008 3.992 21 C 0.022 3.978 22 O -0.317 6.317 23 H 0.086 0.914 24 H 0.014 0.986 25 H 0.027 0.973 26 H 0.264 0.736 27 H 0.126 0.874 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 8.027 -10.841 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.309 6.309 3 C 0.211 3.789 4 H 0.012 0.988 5 C -0.568 4.568 6 H 0.068 0.932 7 C -0.175 4.175 8 N -0.535 5.535 9 Si 0.786 3.214 10 H -0.196 1.196 11 H -0.202 1.202 12 H -0.193 1.193 13 C -0.101 4.101 14 C -0.135 4.135 15 C -0.128 4.128 16 C -0.147 4.147 17 C -0.011 4.011 18 C -0.012 4.012 19 O -0.241 6.241 20 C -0.067 4.067 21 C -0.052 4.052 22 O -0.233 6.233 23 H 0.105 0.895 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.182 0.818 29 H 0.177 0.823 30 H 0.161 0.839 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.122 7.874 -10.654 13.295 hybrid contribution 0.367 0.279 1.083 1.177 sum -0.755 8.154 -9.571 12.596 Atomic orbital electron populations 1.22501 0.83666 1.01526 0.97745 1.88019 1.17900 1.30724 1.94259 1.18142 0.92917 0.81153 0.86651 0.98789 1.21133 0.92697 1.46932 0.96079 0.93238 1.25845 1.00237 0.93487 0.97880 1.70112 1.29060 1.43461 1.10821 0.85526 0.79560 0.78153 0.78181 1.19597 1.20189 1.19346 1.20493 1.00319 0.90525 0.98716 1.20920 1.00785 0.99495 0.92313 1.21208 0.99994 0.95384 0.96170 1.20668 1.04293 0.91237 0.98515 1.19029 1.05462 0.84829 0.91746 1.18884 1.05728 0.89875 0.86750 1.86402 1.80441 1.19992 1.37215 1.23920 1.00667 0.82030 1.00076 1.23866 0.99619 0.94722 0.87035 1.86200 1.79814 1.12798 1.44448 0.89525 0.96739 0.95403 0.92734 0.85608 0.81805 0.82334 0.83857 0.91173 0.90479 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.92 10.81 113.37 1.23 3.15 16 2 O -0.39 -21.19 8.57 -148.98 -1.28 -22.47 16 3 C 0.27 14.89 1.88 29.10 0.05 14.95 16 4 H -0.01 -0.34 7.30 -2.39 -0.02 -0.35 16 5 C -0.53 -31.64 8.78 25.60 0.22 -31.42 16 6 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 7 C 0.03 1.61 5.40 84.65 0.46 2.07 16 8 N -0.90 -54.23 12.84 21.45 0.28 -53.95 16 9 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 C -0.10 -4.75 4.97 -19.76 -0.10 -4.85 16 14 C -0.12 -4.79 9.35 22.26 0.21 -4.58 16 15 C -0.11 -3.48 10.04 22.26 0.22 -3.26 16 16 C -0.13 -4.03 9.96 22.37 0.22 -3.81 16 17 C 0.03 1.24 6.49 22.56 0.15 1.39 16 18 C 0.03 1.42 6.47 22.56 0.15 1.57 16 19 O -0.33 -14.05 9.50 -82.56 -0.78 -14.84 16 20 C 0.01 0.23 7.26 72.14 0.52 0.76 16 21 C 0.02 0.53 7.26 72.14 0.52 1.05 16 22 O -0.32 -9.83 10.42 -82.55 -0.86 -10.69 16 23 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 24 H 0.01 0.67 8.08 -2.39 -0.02 0.65 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 27 H 0.13 5.23 7.34 -2.91 -0.02 5.21 16 28 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -73.29 284.60 4.35 -68.95 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.11 Total: 8.71 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 3.86 Total: -22.98 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.28 Total: -53.95 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -2.92 Total: -48.00 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.29 4.35 -68.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.372 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds