Wall clock time and date at job start Mon Mar 30 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42890 * 114.00190 * 2 1 4 4 H 1.08999 * 109.47241 * 32.34438 * 3 2 1 5 5 C 1.50703 * 109.47481 * 272.34222 * 3 2 1 6 6 H 1.07996 * 120.00211 * 294.73015 * 5 3 2 7 7 C 1.37875 * 120.00075 * 114.71963 * 5 3 2 8 8 N 1.31515 * 119.99969 * 5.48673 * 7 5 3 9 9 Si 1.86799 * 120.00284 * 185.48932 * 7 5 3 10 10 H 1.48497 * 109.47274 * 89.99697 * 9 7 5 11 11 H 1.48502 * 109.47401 * 210.00183 * 9 7 5 12 12 H 1.48497 * 109.46863 * 330.00149 * 9 7 5 13 13 C 1.50701 * 109.47029 * 152.34417 * 3 2 1 14 14 C 1.38233 * 119.96678 * 25.02512 * 13 3 2 15 15 C 1.38212 * 120.11285 * 179.78095 * 14 13 3 16 16 C 1.38239 * 120.11244 * 0.51542 * 15 14 13 17 17 C 1.38661 * 120.06576 * 359.47938 * 16 15 14 18 18 C 1.38658 * 119.96676 * 204.99771 * 13 3 2 19 19 O 1.36112 * 119.40351 * 359.82123 * 18 13 3 20 20 C 1.43174 * 116.69666 * 162.81142 * 19 18 13 21 21 C 1.53468 * 108.24442 * 46.25238 * 20 19 18 22 22 O 1.36102 * 119.39737 * 180.02562 * 17 16 15 23 23 H 1.09001 * 109.47373 * 55.43559 * 1 2 3 24 24 H 1.08997 * 109.47571 * 175.44493 * 1 2 3 25 25 H 1.09009 * 109.46716 * 295.44084 * 1 2 3 26 26 H 0.97005 * 120.00216 * 179.97438 * 8 7 5 27 27 H 1.07997 * 119.94769 * 0.02562 * 14 13 3 28 28 H 1.08000 * 119.94438 * 180.31388 * 15 14 13 29 29 H 1.08004 * 119.96302 * 179.76538 * 16 15 14 30 30 H 1.09003 * 109.70727 * 286.56217 * 20 19 18 31 31 H 1.09007 * 109.70782 * 165.94098 * 20 19 18 32 32 H 1.08998 * 109.70739 * 180.55875 * 21 20 19 33 33 H 1.08996 * 109.73964 * 59.95354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3649 1.9904 0.5498 5 6 2.1616 1.7879 -1.4196 6 1 2.8363 1.2808 -2.0934 7 6 1.4385 2.8768 -1.8584 8 7 0.6996 3.5600 -1.0116 9 14 1.5082 3.3817 -3.6555 10 1 0.4375 2.6806 -4.4085 11 1 1.3110 4.8495 -3.7654 12 1 2.8317 3.0164 -4.2212 13 6 3.3643 1.2523 0.6595 14 6 4.0759 0.0674 0.6808 15 6 5.3200 0.0165 1.2809 16 6 5.8522 1.1476 1.8711 17 6 5.1436 2.3394 1.8531 18 6 3.8952 2.3922 1.2438 19 8 3.1847 3.5527 1.2112 20 6 3.5810 4.5756 2.1312 21 6 5.1091 4.7067 2.0748 22 8 5.6806 3.4448 2.4378 23 1 -0.3634 0.5830 -0.8463 24 1 -0.3634 -1.0244 -0.0816 25 1 -0.3633 0.4415 0.9281 26 1 0.1912 4.3263 -1.3202 27 1 3.6610 -0.8190 0.2244 28 1 5.8759 -0.9094 1.2915 29 1 6.8229 1.1041 2.3426 30 1 3.2725 4.3021 3.1403 31 1 3.1202 5.5223 1.8492 32 1 5.4382 5.4742 2.7752 33 1 5.4186 4.9739 1.0645 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403617.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:16 Heat of formation + Delta-G solvation = -89.544224 kcal Electronic energy + Delta-G solvation = -18917.875073 eV Core-core repulsion = 15909.730379 eV Total energy + Delta-G solvation = -3008.144695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55823 -37.52091 -36.54375 -35.95174 -32.64258 -30.64963 -30.59368 -27.72248 -26.86220 -25.29211 -24.08533 -23.04718 -20.52087 -20.19558 -17.89576 -16.75289 -16.63976 -16.41141 -14.99913 -14.79782 -14.59739 -14.18729 -14.09367 -13.82348 -13.64029 -13.47253 -13.10074 -12.61085 -12.20969 -11.66495 -11.37242 -11.17158 -10.97887 -10.81651 -10.54308 -10.46735 -10.39165 -9.89774 -9.83881 -9.04656 -8.65303 -8.27283 -7.58271 -7.30667 -6.06798 -4.16827 2.06960 2.10268 3.26429 3.32627 3.37886 3.59340 3.95077 4.34481 4.51013 4.72308 5.00629 5.19793 5.23344 5.27928 5.56178 5.62897 5.73892 5.84952 5.96136 6.18118 6.29809 6.43851 6.49273 6.68513 6.81453 6.93071 7.14598 7.19500 7.42535 7.47342 7.65603 7.81509 8.17721 8.24327 8.56997 9.05588 9.49983 10.95040 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.009798 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.220053 B = 2857.007096 C = 3549.949336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.414 6.414 3 C 0.228 3.772 4 H 0.077 0.923 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.077 3.923 8 N -0.874 5.874 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 C -0.030 4.030 14 C -0.111 4.111 15 C -0.127 4.127 16 C -0.141 4.141 17 C 0.034 3.966 18 C 0.057 3.943 19 O -0.265 6.265 20 C 0.019 3.981 21 C 0.022 3.978 22 O -0.316 6.316 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.019 0.981 26 H 0.263 0.737 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 0.474 6.068 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.334 6.334 3 C 0.173 3.827 4 H 0.095 0.905 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.128 4.128 8 N -0.511 5.511 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.031 4.031 14 C -0.129 4.129 15 C -0.145 4.145 16 C -0.160 4.160 17 C -0.010 4.010 18 C 0.011 3.989 19 O -0.178 6.178 20 C -0.058 4.058 21 C -0.054 4.054 22 O -0.231 6.231 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.149 0.851 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.254 0.539 6.099 8.068 hybrid contribution -0.120 0.929 -0.975 1.352 sum 5.134 1.468 5.124 7.401 Atomic orbital electron populations 1.22255 0.83180 0.99356 0.99337 1.87654 1.18012 1.32431 1.95285 1.18762 0.87101 0.81554 0.95249 0.90536 1.21289 1.25333 1.13549 0.95670 0.92428 1.25001 0.94530 0.95598 0.97629 1.69912 1.28888 1.18452 1.33858 0.86585 0.78711 0.77512 0.85164 1.20433 1.21166 1.19711 1.19783 0.99005 0.89408 0.94886 1.20814 0.93950 0.97900 1.00242 1.20781 0.96378 0.97273 1.00067 1.20122 0.99999 0.90933 1.04927 1.18788 0.92363 0.88050 1.01818 1.18672 0.90158 0.87915 1.02128 1.86750 1.53938 1.21363 1.55717 1.23491 0.94643 0.93328 0.94322 1.23537 0.94525 0.84966 1.02379 1.86206 1.58553 1.13127 1.65253 0.93945 0.92519 0.96226 0.92729 0.85140 0.86211 0.86169 0.91571 0.86870 0.87110 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 10.79 101.05 1.09 2.30 16 2 O -0.41 -10.24 9.17 -35.23 -0.32 -10.57 16 3 C 0.23 6.00 2.34 -29.03 -0.07 5.93 16 4 H 0.08 2.19 6.15 -51.93 -0.32 1.87 16 5 C -0.52 -14.61 8.51 -34.44 -0.29 -14.90 16 6 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.87 -24.32 12.62 55.43 0.70 -23.62 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C -0.03 -0.71 5.06 -104.47 -0.53 -1.24 16 14 C -0.11 -2.33 9.34 -39.59 -0.37 -2.70 16 15 C -0.13 -2.27 10.04 -39.59 -0.40 -2.67 16 16 C -0.14 -2.57 9.96 -39.42 -0.39 -2.96 16 17 C 0.03 0.69 6.49 -39.14 -0.25 0.43 16 18 C 0.06 1.30 6.47 -39.14 -0.25 1.04 16 19 O -0.26 -6.05 9.50 -32.86 -0.31 -6.36 16 20 C 0.02 0.31 7.26 37.40 0.27 0.58 16 21 C 0.02 0.32 7.26 37.40 0.27 0.60 16 22 O -0.32 -5.71 10.42 -32.83 -0.34 -6.05 16 23 H 0.04 0.99 8.05 -51.93 -0.42 0.57 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.13 2.68 7.35 -52.49 -0.39 2.30 16 28 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 1.62 8.14 -51.92 -0.42 1.20 16 32 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 284.21 15.07 4.28 4.28 Total: -1.00 -30.93 284.21 -6.09 -37.02 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.05 Total: 0.60 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.02 Total: -11.57 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.70 Total: -23.62 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.98 Total: -22.98 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.93 -6.09 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403617.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.524 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds