Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42890 * 114.00190 * 2 1 4 4 H 1.08999 * 109.47241 * 32.34438 * 3 2 1 5 5 C 1.50703 * 109.47481 * 272.34222 * 3 2 1 6 6 H 1.07996 * 120.00211 * 294.73015 * 5 3 2 7 7 C 1.37875 * 120.00075 * 114.71963 * 5 3 2 8 8 N 1.31515 * 119.99969 * 5.48673 * 7 5 3 9 9 Si 1.86799 * 120.00284 * 185.48932 * 7 5 3 10 10 H 1.48497 * 109.47274 * 89.99697 * 9 7 5 11 11 H 1.48502 * 109.47401 * 210.00183 * 9 7 5 12 12 H 1.48497 * 109.46863 * 330.00149 * 9 7 5 13 13 C 1.50701 * 109.47029 * 152.34417 * 3 2 1 14 14 C 1.38233 * 119.96678 * 25.02512 * 13 3 2 15 15 C 1.38212 * 120.11285 * 179.78095 * 14 13 3 16 16 C 1.38239 * 120.11244 * 0.51542 * 15 14 13 17 17 C 1.38661 * 120.06576 * 359.47938 * 16 15 14 18 18 C 1.38658 * 119.96676 * 204.99771 * 13 3 2 19 19 O 1.36112 * 119.40351 * 359.82123 * 18 13 3 20 20 C 1.43174 * 116.69666 * 162.81142 * 19 18 13 21 21 C 1.53468 * 108.24442 * 46.25238 * 20 19 18 22 22 O 1.36102 * 119.39737 * 180.02562 * 17 16 15 23 23 H 1.09001 * 109.47373 * 55.43559 * 1 2 3 24 24 H 1.08997 * 109.47571 * 175.44493 * 1 2 3 25 25 H 1.09009 * 109.46716 * 295.44084 * 1 2 3 26 26 H 0.97005 * 120.00216 * 179.97438 * 8 7 5 27 27 H 1.07997 * 119.94769 * 0.02562 * 14 13 3 28 28 H 1.08000 * 119.94438 * 180.31388 * 15 14 13 29 29 H 1.08004 * 119.96302 * 179.76538 * 16 15 14 30 30 H 1.09003 * 109.70727 * 286.56217 * 20 19 18 31 31 H 1.09007 * 109.70782 * 165.94098 * 20 19 18 32 32 H 1.08998 * 109.70739 * 180.55875 * 21 20 19 33 33 H 1.08996 * 109.73964 * 59.95354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3649 1.9904 0.5498 5 6 2.1616 1.7879 -1.4196 6 1 2.8363 1.2808 -2.0934 7 6 1.4385 2.8768 -1.8584 8 7 0.6996 3.5600 -1.0116 9 14 1.5082 3.3817 -3.6555 10 1 0.4375 2.6806 -4.4085 11 1 1.3110 4.8495 -3.7654 12 1 2.8317 3.0164 -4.2212 13 6 3.3643 1.2523 0.6595 14 6 4.0759 0.0674 0.6808 15 6 5.3200 0.0165 1.2809 16 6 5.8522 1.1476 1.8711 17 6 5.1436 2.3394 1.8531 18 6 3.8952 2.3922 1.2438 19 8 3.1847 3.5527 1.2112 20 6 3.5810 4.5756 2.1312 21 6 5.1091 4.7067 2.0748 22 8 5.6806 3.4448 2.4378 23 1 -0.3634 0.5830 -0.8463 24 1 -0.3634 -1.0244 -0.0816 25 1 -0.3633 0.4415 0.9281 26 1 0.1912 4.3263 -1.3202 27 1 3.6610 -0.8190 0.2244 28 1 5.8759 -0.9094 1.2915 29 1 6.8229 1.1041 2.3426 30 1 3.2725 4.3021 3.1403 31 1 3.1202 5.5223 1.8492 32 1 5.4382 5.4742 2.7752 33 1 5.4186 4.9739 1.0645 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403617.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = -109.727985 kcal Electronic energy + Delta-G solvation = -18918.750307 eV Core-core repulsion = 15909.730379 eV Total energy + Delta-G solvation = -3009.019928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.03103 -39.17818 -38.06328 -37.66960 -34.69840 -32.32865 -31.97288 -29.18444 -28.73228 -27.17936 -25.48556 -24.88490 -22.14823 -21.69117 -19.40153 -18.72085 -18.21692 -17.93599 -16.87970 -16.34719 -16.13031 -15.93503 -15.66669 -15.53191 -15.32339 -14.97598 -14.57909 -14.10436 -14.02766 -13.32869 -13.17080 -12.88338 -12.69387 -12.48319 -12.26023 -12.06823 -11.89183 -11.73780 -11.43420 -10.94493 -10.71522 -10.17981 -9.23383 -8.86237 -8.12676 -6.31734 0.51014 0.55492 1.36332 1.37440 1.47676 2.23693 2.37960 2.54600 2.88031 3.08085 3.32591 3.55766 3.95916 3.98535 4.15649 4.31451 4.42418 4.52720 4.61371 4.65543 4.69129 4.73864 4.85289 4.97314 5.13440 5.26925 5.41420 5.54661 5.65062 5.75610 5.90078 6.15508 6.17730 6.55082 6.69045 6.99628 7.38329 8.87377 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.009798 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.220053 B = 2857.007096 C = 3549.949336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.422 6.422 3 C 0.238 3.762 4 H 0.042 0.958 5 C -0.542 4.542 6 H 0.041 0.959 7 C 0.037 3.963 8 N -0.895 5.895 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.274 1.274 13 C -0.072 4.072 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.133 4.133 17 C 0.029 3.971 18 C 0.035 3.965 19 O -0.306 6.306 20 C 0.008 3.992 21 C 0.023 3.977 22 O -0.316 6.316 23 H 0.018 0.982 24 H 0.097 0.903 25 H 0.022 0.978 26 H 0.265 0.735 27 H 0.127 0.873 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 0.409 6.605 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.342 6.342 3 C 0.183 3.817 4 H 0.060 0.940 5 C -0.580 4.580 6 H 0.059 0.941 7 C -0.166 4.166 8 N -0.533 5.533 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.202 1.202 12 H -0.199 1.199 13 C -0.073 4.073 14 C -0.140 4.140 15 C -0.130 4.130 16 C -0.151 4.151 17 C -0.016 4.016 18 C -0.011 4.011 19 O -0.220 6.220 20 C -0.067 4.067 21 C -0.051 4.051 22 O -0.232 6.232 23 H 0.037 0.963 24 H 0.115 0.885 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.181 0.819 29 H 0.175 0.825 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.178 0.822 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.026 0.477 6.647 9.683 hybrid contribution -0.654 0.957 -1.049 1.563 sum 6.371 1.435 5.598 8.602 Atomic orbital electron populations 1.22394 0.81850 1.01478 0.98428 1.87616 1.19519 1.31839 1.95260 1.18451 0.88063 0.81033 0.94192 0.94002 1.21411 1.25602 1.14181 0.96784 0.94110 1.25659 0.94119 0.95459 1.01319 1.70022 1.29297 1.18667 1.35296 0.85692 0.78604 0.77551 0.80602 1.19613 1.20205 1.19885 1.19828 0.98632 0.91457 0.97358 1.20915 0.95333 0.96791 1.00984 1.21185 0.94937 0.99000 0.97864 1.20625 1.00936 0.89936 1.03611 1.19025 0.91653 0.89593 1.01300 1.18869 0.91403 0.87731 1.03060 1.86662 1.55333 1.22440 1.57589 1.23839 0.96388 0.92648 0.93842 1.23809 0.92965 0.84662 1.03704 1.86199 1.58463 1.13537 1.64971 0.96314 0.88493 0.95970 0.92568 0.85462 0.81861 0.82542 0.90754 0.85105 0.82247 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.44 10.79 113.37 1.22 3.66 16 2 O -0.42 -21.53 9.17 -148.98 -1.37 -22.90 16 3 C 0.24 13.05 2.34 29.10 0.07 13.12 16 4 H 0.04 2.55 6.15 -2.39 -0.01 2.53 16 5 C -0.54 -31.56 8.51 25.60 0.22 -31.35 16 6 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 7 C 0.04 2.07 5.45 84.65 0.46 2.53 16 8 N -0.90 -51.38 12.62 21.45 0.27 -51.11 16 9 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 C -0.07 -3.54 5.06 -19.76 -0.10 -3.64 16 14 C -0.12 -5.11 9.34 22.26 0.21 -4.90 16 15 C -0.11 -3.71 10.04 22.26 0.22 -3.49 16 16 C -0.13 -4.42 9.96 22.37 0.22 -4.19 16 17 C 0.03 1.13 6.49 22.56 0.15 1.28 16 18 C 0.03 1.61 6.47 22.56 0.15 1.76 16 19 O -0.31 -14.41 9.50 -82.61 -0.79 -15.19 16 20 C 0.01 0.27 7.26 72.14 0.52 0.79 16 21 C 0.02 0.65 7.26 72.14 0.52 1.17 16 22 O -0.32 -10.68 10.42 -82.50 -0.86 -11.54 16 23 H 0.02 0.89 8.05 -2.39 -0.02 0.87 16 24 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 25 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 27 H 0.13 5.26 7.35 -2.91 -0.02 5.24 16 28 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.13 3.67 8.14 -2.38 -0.02 3.65 16 32 H 0.16 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.59 284.21 4.26 -65.33 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.11 Total: 12.29 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.86 Total: -23.25 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.27 Total: -51.11 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -3.01 Total: -49.63 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -69.59 4.26 -65.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403617.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.401 kcal (2) G-P(sol) polarization free energy of solvation -69.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds