Wall clock time and date at job start Mon Mar 30 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46562 * 2 1 4 4 C 1.50691 * 109.47214 * 239.99921 * 2 1 3 5 5 H 1.08005 * 120.00436 * 275.01772 * 4 2 1 6 6 C 1.37888 * 120.00056 * 95.01951 * 4 2 1 7 7 N 1.31513 * 120.00066 * 184.91161 * 6 4 2 8 8 Si 1.86801 * 119.99741 * 4.91680 * 6 4 2 9 9 H 1.48493 * 109.47268 * 84.83351 * 8 6 4 10 10 H 1.48501 * 109.46670 * 204.83407 * 8 6 4 11 11 H 1.48504 * 109.47081 * 324.82938 * 8 6 4 12 12 C 1.50697 * 109.47163 * 119.99476 * 2 1 3 13 13 C 1.38149 * 120.03048 * 240.00518 * 12 2 1 14 14 C 1.38459 * 120.24584 * 180.02562 * 13 12 2 15 15 C 1.38476 * 119.99175 * 0.03074 * 14 13 12 16 16 C 1.38577 * 119.80201 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 119.90482 * 179.97438 * 16 15 14 18 18 C 1.38190 * 120.02342 * 60.02785 * 12 2 1 19 19 C 1.51364 * 109.79598 * 179.97438 * 15 14 13 20 20 C 1.54342 * 105.16839 * 342.83536 * 19 15 14 21 21 C 1.51365 * 130.38875 * 180.02562 * 14 13 12 22 22 H 1.08998 * 109.46696 * 174.98247 * 1 2 3 23 23 H 1.09000 * 109.47075 * 294.98018 * 1 2 3 24 24 H 1.08999 * 109.47136 * 54.98480 * 1 2 3 25 25 H 0.96994 * 120.00297 * 180.02562 * 7 6 4 26 26 H 1.08000 * 119.87724 * 0.02562 * 13 12 2 27 27 H 1.08005 * 120.03977 * 359.95073 * 18 12 2 28 28 H 1.09008 * 110.30061 * 223.91473 * 19 15 14 29 29 H 1.08992 * 110.38495 * 101.80707 * 19 15 14 30 30 H 1.09000 * 110.82894 * 268.12221 * 20 19 15 31 31 H 1.09005 * 110.99015 * 144.65273 * 20 19 15 32 32 H 1.09005 * 110.30377 * 78.26220 * 21 14 13 33 33 H 1.09001 * 110.30220 * 316.20893 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1353 -1.7855 -1.2291 6 6 2.3607 0.0122 -2.3579 7 7 2.7065 -0.6130 -3.4621 8 14 2.3145 1.8792 -2.3170 9 1 3.6000 2.3946 -1.7816 10 1 2.1070 2.3993 -3.6924 11 1 1.1995 2.3278 -1.4448 12 6 2.0324 -0.7103 1.2305 13 6 2.8266 -0.0394 2.1403 14 6 3.2910 -0.6878 3.2721 15 6 2.9602 -2.0138 3.4949 16 6 2.1636 -2.6876 2.5828 17 17 1.7478 -4.3503 2.8593 18 6 1.6993 -2.0334 1.4495 19 6 3.5862 -2.4879 4.7890 20 6 4.6854 -1.4527 5.1088 21 6 4.1613 -0.1840 4.4034 22 1 -0.3632 -1.0237 -0.0899 23 1 -0.3633 0.4340 0.9315 24 1 -0.3633 0.5897 -0.8416 25 1 2.9378 -0.1048 -4.2551 26 1 3.0862 0.9947 1.9680 27 1 1.0782 -2.5593 0.7394 28 1 4.0249 -3.4769 4.6568 29 1 2.8424 -2.5081 5.5854 30 1 5.6427 -1.7617 4.6888 31 1 4.7696 -1.2919 6.1836 32 1 3.5714 0.4168 5.0957 33 1 4.9925 0.4008 4.0096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:45 Heat of formation + Delta-G solvation = -21.697166 kcal Electronic energy + Delta-G solvation = -15861.282395 eV Core-core repulsion = 13296.788934 eV Total energy + Delta-G solvation = -2564.493461 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.08389 -37.75146 -37.49300 -35.07420 -33.29438 -31.88805 -29.28186 -28.09193 -27.21278 -23.71460 -23.25080 -21.66155 -20.56261 -18.99992 -17.26524 -16.77576 -16.45247 -16.09531 -15.99091 -14.80243 -14.37842 -14.29017 -14.16750 -14.08857 -13.68473 -13.37594 -12.97297 -12.80291 -12.75224 -12.44935 -12.28726 -12.15503 -11.96383 -11.82128 -11.76832 -11.51750 -11.34110 -11.09846 -10.70356 -9.49148 -9.22120 -8.28703 -6.32995 0.29321 0.43608 1.20760 1.35589 1.36861 1.47545 2.34883 2.71630 3.08944 3.48023 3.66582 4.07436 4.16180 4.23263 4.33258 4.40429 4.56424 4.60577 4.77257 4.86654 4.90243 4.95748 4.97060 5.06894 5.15634 5.22193 5.25290 5.34330 5.42532 5.51932 5.57130 5.61196 5.85595 5.98864 6.32480 6.72751 7.31242 8.88048 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.024287 B = 0.007089 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.609288 B = 3948.680136 C = 4594.081402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.041 3.959 3 H 0.046 0.954 4 C -0.508 4.508 5 H 0.032 0.968 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.939 3.061 9 H -0.265 1.265 10 H -0.288 1.288 11 H -0.239 1.239 12 C -0.041 4.041 13 C -0.125 4.125 14 C -0.089 4.089 15 C -0.120 4.120 16 C -0.029 4.029 17 Cl -0.078 7.078 18 C -0.120 4.120 19 C -0.074 4.074 20 C -0.111 4.111 21 C -0.077 4.077 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.266 0.734 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 1.150 18.888 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.022 3.978 3 H 0.064 0.936 4 C -0.546 4.546 5 H 0.050 0.950 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.763 3.237 9 H -0.190 1.190 10 H -0.215 1.215 11 H -0.163 1.163 12 C -0.041 4.041 13 C -0.143 4.143 14 C -0.090 4.090 15 C -0.121 4.121 16 C -0.056 4.056 17 Cl -0.049 7.049 18 C -0.139 4.139 19 C -0.111 4.111 20 C -0.148 4.148 21 C -0.114 4.114 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.149 0.851 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.487 1.013 18.736 18.822 hybrid contribution -0.187 0.105 -1.207 1.226 sum 1.300 1.118 17.529 17.613 Atomic orbital electron populations 1.21898 0.96299 1.00680 0.99916 1.18261 0.93996 0.95362 0.90189 0.93583 1.21160 1.43221 0.93814 0.96379 0.94986 1.25947 0.94227 1.03746 0.94627 1.70054 1.48165 1.38047 1.02672 0.85855 0.80304 0.79884 0.77707 1.18979 1.21470 1.16266 1.20092 0.95412 0.93547 0.95072 1.20815 0.98815 1.00794 0.93846 1.20951 0.98371 0.93756 0.95901 1.20718 0.98647 0.95010 0.97684 1.20729 1.02107 0.85670 0.97060 1.98310 1.92645 1.17807 1.96159 1.20852 1.02046 0.94941 0.96068 1.21069 0.97979 0.99963 0.92083 1.22318 0.97484 0.92966 1.02078 1.21144 0.97836 0.98828 0.93596 0.93921 0.92795 0.93807 0.92530 0.85121 0.86926 0.90602 0.88925 0.90846 0.87582 0.88344 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.92 71.98 0.64 -4.72 16 2 C 0.04 1.87 2.14 -12.29 -0.03 1.84 16 3 H 0.05 2.04 5.02 -2.39 -0.01 2.03 16 4 C -0.51 -28.77 8.64 25.60 0.22 -28.55 16 5 H 0.03 2.04 7.65 -2.91 -0.02 2.02 16 6 C 0.01 0.66 5.47 84.66 0.46 1.12 16 7 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 8 Si 0.94 43.15 26.99 68.60 1.85 45.01 16 9 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.24 -9.98 6.82 99.48 0.68 -9.31 16 12 C -0.04 -1.70 4.77 -19.90 -0.09 -1.79 16 13 C -0.12 -4.42 9.67 22.30 0.22 -4.20 16 14 C -0.09 -2.67 6.15 -19.54 -0.12 -2.79 16 15 C -0.12 -3.64 6.06 -19.52 -0.12 -3.76 16 16 C -0.03 -1.03 6.34 22.50 0.14 -0.89 16 17 Cl -0.08 -2.43 28.72 -2.72 -0.08 -2.51 16 18 C -0.12 -4.92 8.46 22.41 0.19 -4.73 16 19 C -0.07 -1.59 6.47 30.51 0.20 -1.40 16 20 C -0.11 -1.86 7.08 31.50 0.22 -1.63 16 21 C -0.08 -1.55 6.76 30.51 0.21 -1.34 16 22 H 0.04 1.77 7.57 -2.39 -0.02 1.75 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.13 4.18 7.94 -2.91 -0.02 4.16 16 27 H 0.11 4.93 7.56 -2.91 -0.02 4.90 16 28 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.39 286.82 5.28 -60.11 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.07 Total: 9.31 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 2.14 Total: -52.85 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.30 Total: -59.07 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.85 Total: 45.01 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.51 kcal Total: -65.39 5.28 -60.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.411 kcal (2) G-P(sol) polarization free energy of solvation -65.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds