Wall clock time and date at job start Mon Mar 30 2020 05:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47109 * 2 1 4 4 C 1.50704 * 109.47213 * 119.99498 * 2 1 3 5 5 H 1.08000 * 119.99691 * 119.99417 * 4 2 1 6 6 C 1.37875 * 120.00128 * 300.00779 * 4 2 1 7 7 N 1.31514 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46966 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47525 * 119.99502 * 8 6 4 11 11 H 1.48500 * 109.47141 * 239.99847 * 8 6 4 12 12 C 1.50700 * 109.47567 * 239.99778 * 2 1 3 13 13 C 1.38149 * 120.02499 * 120.22416 * 12 2 1 14 14 C 1.38458 * 120.24182 * 180.27048 * 13 12 2 15 15 C 1.38243 * 119.85803 * 359.51118 * 14 13 12 16 16 C 1.38568 * 119.84256 * 0.24171 * 15 14 13 17 17 Cl 1.73600 * 119.90991 * 179.97438 * 16 15 14 18 18 C 1.38184 * 120.02293 * 300.00449 * 12 2 1 19 19 C 1.51366 * 109.76466 * 180.24619 * 15 14 13 20 20 C 1.54351 * 105.16684 * 342.81140 * 19 15 14 21 21 C 1.51376 * 130.39448 * 179.80936 * 14 13 12 22 22 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47376 * 299.99996 * 1 2 3 24 24 H 1.08999 * 109.47269 * 60.00327 * 1 2 3 25 25 H 0.97003 * 119.99846 * 180.02562 * 7 6 4 26 26 H 1.07997 * 119.88215 * 0.08018 * 13 12 2 27 27 H 1.08001 * 120.04523 * 359.97438 * 18 12 2 28 28 H 1.08996 * 110.30670 * 223.88432 * 19 15 14 29 29 H 1.09003 * 110.38752 * 101.77070 * 19 15 14 30 30 H 1.08995 * 110.81788 * 268.11630 * 20 19 15 31 31 H 1.08998 * 110.98911 * 144.64699 * 20 19 15 32 32 H 1.08999 * 110.30149 * 315.83124 * 21 14 13 33 33 H 1.09003 * 110.29787 * 77.87897 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.1454 -2.2874 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1659 -1.5865 4.8161 12 6 2.0324 -0.7104 -1.2304 13 6 2.8305 -0.0409 -2.1377 14 6 3.2900 -0.6876 -3.2725 15 6 2.9570 -2.0111 -3.4929 16 6 2.1606 -2.6830 -2.5794 17 17 1.7407 -4.3449 -2.8547 18 6 1.6988 -2.0334 -1.4496 19 6 3.5808 -2.4872 -4.7872 20 6 3.9628 -1.2002 -5.5488 21 6 4.1604 -0.1840 -4.4040 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7092 1.1618 3.4844 26 1 3.0945 0.9916 -1.9629 27 1 1.0782 -2.5594 -0.7392 28 1 2.8603 -3.0679 -5.3632 29 1 4.4699 -3.0839 -4.5833 30 1 3.1547 -0.8869 -6.2098 31 1 4.8878 -1.3378 -6.1086 32 1 3.8355 0.8078 -4.7184 33 1 5.2053 -0.1586 -4.0948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:48 Heat of formation + Delta-G solvation = -7.940618 kcal Electronic energy + Delta-G solvation = -15821.588651 eV Core-core repulsion = 13257.691719 eV Total energy + Delta-G solvation = -2563.896932 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.77128 -36.32131 -36.05571 -33.47396 -31.08093 -30.31971 -27.79953 -26.75520 -25.15340 -22.28178 -21.74493 -20.57986 -19.08345 -16.41026 -15.77688 -15.50979 -15.02330 -14.63884 -14.41994 -13.07161 -12.96792 -12.87493 -12.71147 -12.37781 -11.90376 -11.57343 -11.37516 -11.24914 -11.10232 -11.00375 -10.95310 -10.66986 -10.54474 -10.43015 -10.16273 -10.06731 -9.50434 -9.01948 -8.41862 -8.08846 -7.74801 -6.05174 -4.12142 1.75981 1.88087 2.59877 3.27340 3.35711 3.40633 4.19636 4.42279 4.62879 4.76129 5.05853 5.25965 5.29714 5.45038 5.71193 5.80154 5.82432 5.85219 5.94578 6.06805 6.13575 6.23378 6.39988 6.51341 6.75789 6.86314 6.92385 7.02349 7.12060 7.24655 7.49303 7.67803 7.89154 8.04610 8.33428 8.90592 9.53031 11.00524 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.006520 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.227185 B = 4293.729646 C = 4806.658256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.072 3.928 3 H 0.038 0.962 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.017 4.017 13 C -0.114 4.114 14 C -0.092 4.092 15 C -0.122 4.122 16 C -0.020 4.020 17 Cl -0.095 7.095 18 C -0.102 4.102 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.078 4.078 22 H 0.029 0.971 23 H 0.087 0.913 24 H 0.009 0.991 25 H 0.261 0.739 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 -3.874 -13.120 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.056 0.944 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.017 4.017 13 C -0.132 4.132 14 C -0.092 4.092 15 C -0.123 4.123 16 C -0.046 4.046 17 Cl -0.066 7.066 18 C -0.120 4.120 19 C -0.110 4.110 20 C -0.156 4.156 21 C -0.115 4.115 22 H 0.048 0.952 23 H 0.105 0.895 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.138 0.862 27 H 0.152 0.848 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.734 -3.912 -13.009 14.088 hybrid contribution 0.242 -0.631 1.011 1.216 sum 3.976 -4.543 -11.998 13.431 Atomic orbital electron populations 1.21799 0.97399 0.99438 1.00423 1.17918 0.93021 0.95473 0.88209 0.94408 1.21141 1.31303 1.12451 0.89770 0.92329 1.24947 0.94969 0.94969 0.98972 1.69891 1.36632 1.22846 1.23413 0.86523 0.78714 0.79781 0.82983 1.19695 1.20971 1.20937 1.20552 0.92657 0.92819 0.95676 1.20719 0.98947 1.00230 0.93298 1.20401 0.98742 0.93910 0.96129 1.20076 1.00175 0.94851 0.97170 1.20512 1.01945 0.84778 0.97371 1.98309 1.92708 1.19286 1.96336 1.20910 1.00904 0.95008 0.95199 1.20913 0.99854 0.97604 0.92601 1.22269 1.01459 0.94863 0.97045 1.20994 0.98844 0.99040 0.92606 0.95188 0.89461 0.97157 0.92934 0.86234 0.84787 0.91108 0.90691 0.91160 0.90881 0.90902 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 37.15 0.33 -2.83 16 2 C 0.07 1.77 2.48 -92.93 -0.23 1.54 16 3 H 0.04 0.98 7.87 -51.93 -0.41 0.58 16 4 C -0.51 -13.65 8.24 -34.44 -0.28 -13.93 16 5 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.02 -0.36 4.73 -104.67 -0.50 -0.85 16 13 C -0.11 -2.16 9.67 -39.53 -0.38 -2.54 16 14 C -0.09 -1.51 6.14 -104.21 -0.64 -2.15 16 15 C -0.12 -2.01 6.05 -104.17 -0.63 -2.64 16 16 C -0.02 -0.36 6.32 -39.45 -0.25 -0.61 16 17 Cl -0.10 -1.52 28.71 -51.86 -1.49 -3.01 16 18 C -0.10 -2.07 8.49 -39.59 -0.34 -2.40 16 19 C -0.07 -0.93 6.47 -26.85 -0.17 -1.10 16 20 C -0.12 -1.28 7.08 -25.32 -0.18 -1.46 16 21 C -0.08 -0.97 6.77 -26.85 -0.18 -1.15 16 22 H 0.03 0.68 7.39 -51.93 -0.38 0.29 16 23 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.12 2.13 7.94 -52.49 -0.42 1.71 16 27 H 0.13 2.80 7.58 -52.49 -0.40 2.40 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -27.56 287.18 -9.52 -37.08 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.42 Total: -1.74 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -3.55 Total: -28.52 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.63 Total: -24.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -1.49 Total: -3.01 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.56 -9.52 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.139 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds