Wall clock time and date at job start Mon Mar 30 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47109 * 2 1 4 4 C 1.50704 * 109.47213 * 119.99498 * 2 1 3 5 5 H 1.08000 * 119.99691 * 119.99417 * 4 2 1 6 6 C 1.37875 * 120.00128 * 300.00779 * 4 2 1 7 7 N 1.31514 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46966 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47525 * 119.99502 * 8 6 4 11 11 H 1.48500 * 109.47141 * 239.99847 * 8 6 4 12 12 C 1.50700 * 109.47567 * 239.99778 * 2 1 3 13 13 C 1.38149 * 120.02499 * 120.22416 * 12 2 1 14 14 C 1.38458 * 120.24182 * 180.27048 * 13 12 2 15 15 C 1.38243 * 119.85803 * 359.51118 * 14 13 12 16 16 C 1.38568 * 119.84256 * 0.24171 * 15 14 13 17 17 Cl 1.73600 * 119.90991 * 179.97438 * 16 15 14 18 18 C 1.38184 * 120.02293 * 300.00449 * 12 2 1 19 19 C 1.51366 * 109.76466 * 180.24619 * 15 14 13 20 20 C 1.54351 * 105.16684 * 342.81140 * 19 15 14 21 21 C 1.51376 * 130.39448 * 179.80936 * 14 13 12 22 22 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47376 * 299.99996 * 1 2 3 24 24 H 1.08999 * 109.47269 * 60.00327 * 1 2 3 25 25 H 0.97003 * 119.99846 * 180.02562 * 7 6 4 26 26 H 1.07997 * 119.88215 * 0.08018 * 13 12 2 27 27 H 1.08001 * 120.04523 * 359.97438 * 18 12 2 28 28 H 1.08996 * 110.30670 * 223.88432 * 19 15 14 29 29 H 1.09003 * 110.38752 * 101.77070 * 19 15 14 30 30 H 1.08995 * 110.81788 * 268.11630 * 20 19 15 31 31 H 1.08998 * 110.98911 * 144.64699 * 20 19 15 32 32 H 1.08999 * 110.30149 * 315.83124 * 21 14 13 33 33 H 1.09003 * 110.29787 * 77.87897 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.1454 -2.2874 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1659 -1.5865 4.8161 12 6 2.0324 -0.7104 -1.2304 13 6 2.8305 -0.0409 -2.1377 14 6 3.2900 -0.6876 -3.2725 15 6 2.9570 -2.0111 -3.4929 16 6 2.1606 -2.6830 -2.5794 17 17 1.7407 -4.3449 -2.8547 18 6 1.6988 -2.0334 -1.4496 19 6 3.5808 -2.4872 -4.7872 20 6 3.9628 -1.2002 -5.5488 21 6 4.1604 -0.1840 -4.4040 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7092 1.1618 3.4844 26 1 3.0945 0.9916 -1.9629 27 1 1.0782 -2.5594 -0.7392 28 1 2.8603 -3.0679 -5.3632 29 1 4.4699 -3.0839 -4.5833 30 1 3.1547 -0.8869 -6.2098 31 1 4.8878 -1.3378 -6.1086 32 1 3.8355 0.8078 -4.7184 33 1 5.2053 -0.1586 -4.0948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:47 Heat of formation + Delta-G solvation = -19.923615 kcal Electronic energy + Delta-G solvation = -15822.108273 eV Core-core repulsion = 13257.691719 eV Total energy + Delta-G solvation = -2564.416554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09724 -37.71144 -37.47506 -35.22447 -32.78006 -31.77548 -29.14490 -28.03222 -27.22504 -23.74298 -23.29251 -21.65981 -20.67788 -18.33797 -17.23976 -16.81511 -16.49733 -16.09211 -16.00511 -14.81665 -14.30648 -14.22331 -14.12229 -13.77411 -13.48104 -13.06446 -12.92538 -12.84382 -12.73878 -12.35474 -12.28989 -12.11904 -12.07370 -11.93358 -11.81048 -11.48529 -11.26788 -10.96663 -10.50047 -9.49302 -9.21047 -8.12511 -6.26340 0.31383 0.45559 1.21817 1.38462 1.41074 1.52193 2.40521 2.76838 3.15425 3.49923 3.67934 4.13690 4.21621 4.24134 4.35390 4.51620 4.60742 4.76761 4.85538 4.91617 4.95955 5.00395 5.10328 5.17261 5.22954 5.28356 5.34904 5.41252 5.48941 5.58790 5.64100 5.95079 6.00108 6.07927 6.32569 6.81501 7.41616 8.92196 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.006520 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.227185 B = 4293.729646 C = 4806.658256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.074 3.926 3 H 0.012 0.988 4 C -0.522 4.522 5 H 0.048 0.952 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.278 1.278 12 C -0.043 4.043 13 C -0.126 4.126 14 C -0.089 4.089 15 C -0.121 4.121 16 C -0.027 4.027 17 Cl -0.077 7.077 18 C -0.119 4.119 19 C -0.074 4.074 20 C -0.109 4.109 21 C -0.078 4.078 22 H 0.029 0.971 23 H 0.062 0.938 24 H 0.026 0.974 25 H 0.263 0.737 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -4.703 -15.171 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.055 3.945 3 H 0.030 0.970 4 C -0.560 4.560 5 H 0.067 0.933 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.044 4.044 13 C -0.144 4.144 14 C -0.090 4.090 15 C -0.121 4.121 16 C -0.054 4.054 17 Cl -0.048 7.048 18 C -0.137 4.137 19 C -0.111 4.111 20 C -0.146 4.146 21 C -0.115 4.115 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.150 -4.745 -15.069 16.616 hybrid contribution -0.186 -0.407 1.567 1.629 sum 4.965 -5.152 -13.502 15.280 Atomic orbital electron populations 1.21634 0.97284 0.99178 0.99881 1.17744 0.93210 0.94156 0.89378 0.97005 1.21376 1.31196 1.12267 0.91159 0.93337 1.25672 0.95201 0.95672 1.01653 1.70003 1.37455 1.23911 1.24059 0.85591 0.78277 0.78715 0.79633 1.19591 1.20369 1.20372 1.20258 0.94971 0.93534 0.95588 1.20802 0.98988 1.00547 0.94063 1.20891 0.98112 0.93976 0.96000 1.20648 0.98632 0.94807 0.98050 1.20572 1.02017 0.85778 0.97004 1.98307 1.92616 1.17729 1.96160 1.20745 1.01900 0.94832 0.96253 1.21071 1.00230 0.99058 0.90713 1.22308 1.03344 0.92605 0.96343 1.21152 0.98585 1.00264 0.91486 0.95190 0.91935 0.95543 0.92795 0.85952 0.86511 0.90134 0.89422 0.90251 0.87822 0.89476 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.78 71.98 0.63 -5.39 16 2 C 0.07 3.76 2.48 -12.29 -0.03 3.73 16 3 H 0.01 0.65 7.87 -2.39 -0.02 0.63 16 4 C -0.52 -28.99 8.24 25.60 0.21 -28.78 16 5 H 0.05 2.72 7.60 -2.91 -0.02 2.70 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -52.48 11.32 21.45 0.24 -52.23 16 8 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C -0.04 -1.90 4.73 -19.90 -0.09 -2.00 16 13 C -0.13 -4.78 9.67 22.30 0.22 -4.56 16 14 C -0.09 -2.79 6.14 -19.60 -0.12 -2.91 16 15 C -0.12 -3.73 6.05 -19.57 -0.12 -3.84 16 16 C -0.03 -0.97 6.32 22.36 0.14 -0.83 16 17 Cl -0.08 -2.36 28.71 -2.72 -0.08 -2.44 16 18 C -0.12 -4.93 8.49 22.26 0.19 -4.74 16 19 C -0.07 -1.60 6.47 30.52 0.20 -1.40 16 20 C -0.11 -1.81 7.08 31.51 0.22 -1.59 16 21 C -0.08 -1.65 6.77 30.52 0.21 -1.44 16 22 H 0.03 1.41 7.39 -2.39 -0.02 1.40 16 23 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 26 H 0.12 4.43 7.94 -2.91 -0.02 4.40 16 27 H 0.12 5.11 7.58 -2.91 -0.02 5.09 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -60.50 287.18 5.39 -55.11 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.10 Total: 5.99 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 2.10 Total: -52.38 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.24 Total: -52.23 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.44 kcal Total: -60.50 5.39 -55.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.189 kcal (2) G-P(sol) polarization free energy of solvation -60.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds