Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48504 * 109.46993 * 268.02912 * 3 2 1 5 5 H 1.48501 * 109.46988 * 28.02680 * 3 2 1 6 6 H 1.48496 * 109.47147 * 148.02720 * 3 2 1 7 7 C 1.37882 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99364 * 6.25267 * 7 2 1 9 9 C 1.50696 * 120.00176 * 186.24715 * 7 2 1 10 10 H 1.09000 * 110.43292 * 332.70635 * 9 7 2 11 11 C 1.54271 * 110.48247 * 95.24441 * 9 7 2 12 12 C 1.53874 * 106.63856 * 142.26456 * 11 9 7 13 13 C 1.54376 * 106.54519 * 0.03548 * 12 11 9 14 14 H 1.09008 * 110.62140 * 95.09888 * 13 12 11 15 15 O 1.42902 * 110.46446 * 217.68219 * 13 12 11 16 16 C 1.35953 * 117.00247 * 270.53571 * 15 13 12 17 17 C 1.38663 * 120.05952 * 5.44927 * 16 15 13 18 18 C 1.38190 * 119.96683 * 179.97438 * 17 16 15 19 19 C 1.38256 * 120.09304 * 0.02562 * 18 17 16 20 20 C 1.38262 * 120.13078 * 0.02562 * 19 18 17 21 21 C 1.38330 * 120.02428 * 359.69910 * 20 19 18 22 22 F 1.35103 * 120.04506 * 180.27677 * 21 20 19 23 23 C 1.54882 * 104.19809 * 336.35354 * 13 12 11 24 24 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.02978 * 261.57106 * 11 9 7 26 26 H 1.09000 * 110.03490 * 22.95957 * 11 9 7 27 27 H 1.08997 * 110.03595 * 119.30945 * 12 11 9 28 28 H 1.09003 * 110.03601 * 240.74250 * 12 11 9 29 29 H 1.08001 * 120.01860 * 359.97438 * 17 16 15 30 30 H 1.07996 * 119.95309 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.93370 * 179.97438 * 19 18 17 32 32 H 1.07993 * 119.98544 * 179.97438 * 20 19 18 33 33 H 1.08996 * 110.75726 * 279.65020 * 23 13 12 34 34 H 1.09003 * 110.91489 * 156.35569 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5384 2.0223 -1.3993 5 1 1.4264 2.6643 0.6579 6 1 3.5252 1.4525 0.7413 7 6 2.0046 -1.1941 0.0005 8 1 1.4693 -2.1267 -0.1009 9 6 3.5048 -1.1979 0.1425 10 1 3.9255 -0.2672 -0.2382 11 6 3.9070 -1.4088 1.6169 12 6 5.1574 -2.3055 1.6086 13 6 5.4720 -2.6074 0.1277 14 1 6.2131 -1.9071 -0.2579 15 8 5.9317 -3.9523 -0.0213 16 6 7.2699 -4.1633 0.0921 17 6 8.1095 -3.1204 0.4527 18 6 9.4694 -3.3372 0.5679 19 6 9.9943 -4.5927 0.3236 20 6 9.1610 -5.6352 -0.0373 21 6 7.7982 -5.4253 -0.1486 22 9 6.9828 -6.4450 -0.4957 23 6 4.1161 -2.4146 -0.5957 24 1 -0.4850 0.8400 -0.0004 25 1 4.1379 -0.4504 2.0817 26 1 3.0985 -1.9007 2.1578 27 1 5.9952 -1.7822 2.0694 28 1 4.9556 -3.2329 2.1446 29 1 7.7008 -2.1390 0.6435 30 1 10.1230 -2.5248 0.8492 31 1 11.0576 -4.7592 0.4140 32 1 9.5736 -6.6148 -0.2280 33 1 3.4858 -3.2957 -0.4761 34 1 4.2669 -2.1899 -1.6516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = -70.618585 kcal Electronic energy + Delta-G solvation = -17875.162198 eV Core-core repulsion = 14880.210971 eV Total energy + Delta-G solvation = -2994.951228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.71081 -40.10499 -37.95364 -36.03330 -32.41663 -30.78774 -29.98488 -28.67972 -27.60334 -24.17096 -22.73555 -22.50900 -20.00834 -19.29227 -18.31925 -17.30191 -16.74312 -16.42489 -15.83175 -15.25987 -15.11786 -14.50362 -14.17214 -13.95555 -13.68380 -13.02427 -12.74883 -12.52011 -12.30948 -12.07585 -11.80442 -11.75187 -11.16886 -10.88623 -10.53778 -10.34550 -10.32520 -10.04924 -9.70204 -9.58954 -9.07240 -9.02658 -8.55457 -8.14828 -6.11724 -4.10334 1.02826 1.20697 3.23599 3.27963 3.33234 3.33966 3.50429 4.23091 4.37770 4.64083 4.74827 4.98208 5.04409 5.10286 5.22614 5.29875 5.40002 5.48127 5.79458 5.91066 5.93704 6.07221 6.19219 6.22601 6.27613 6.30693 6.47076 6.59560 6.61462 6.82224 6.86133 7.16290 7.33872 7.55649 7.73002 8.49755 8.94148 9.50897 11.01448 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.041139 B = 0.005007 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.455998 B = 5590.939560 C = 6001.825642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.016 3.984 10 H 0.037 0.963 11 C -0.121 4.121 12 C -0.143 4.143 13 C 0.070 3.930 14 H 0.074 0.926 15 O -0.298 6.298 16 C 0.111 3.889 17 C -0.187 4.187 18 C -0.090 4.090 19 C -0.141 4.141 20 C -0.118 4.118 21 C 0.058 3.942 22 F -0.134 7.134 23 C -0.101 4.101 24 H 0.264 0.736 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.537 -6.036 1.381 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.093 0.907 9 C -0.003 4.003 10 H 0.056 0.944 11 C -0.159 4.159 12 C -0.181 4.181 13 C 0.015 3.985 14 H 0.092 0.908 15 O -0.211 6.211 16 C 0.064 3.936 17 C -0.206 4.206 18 C -0.108 4.108 19 C -0.159 4.159 20 C -0.137 4.137 21 C 0.039 3.961 22 F -0.112 7.112 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.143 -6.080 1.336 20.130 hybrid contribution 0.342 0.963 0.051 1.023 sum 19.485 -5.117 1.387 20.194 Atomic orbital electron populations 1.69911 1.06336 1.27022 1.50320 1.25080 0.94694 0.99016 0.94330 0.86859 0.80298 0.83784 0.78641 1.20209 1.21498 1.18926 1.20978 0.88860 0.94715 1.50094 0.90672 1.19908 0.96917 0.92936 0.90532 0.94444 1.22503 0.94923 0.97428 1.01088 1.22710 0.99487 1.00902 0.95013 1.23841 0.97607 0.79447 0.97599 0.90845 1.86278 1.17495 1.31789 1.85516 1.19179 0.85001 0.92917 0.96541 1.21326 0.94201 0.99210 1.05823 1.21014 0.94379 0.97277 0.98109 1.20855 0.99814 0.92534 1.02716 1.20980 0.90619 1.00864 1.01246 1.17062 0.88284 0.83292 1.07504 1.91499 1.72418 1.57381 1.89946 1.22668 0.91518 1.01223 0.98429 0.92598 0.93401 0.91188 0.92672 0.91312 0.84199 0.85302 0.85182 0.84412 0.90542 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.92 27.13 -169.99 -4.61 16.31 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -5.95 6.66 56.52 0.38 -5.58 16 7 C -0.51 -13.92 8.77 -34.44 -0.30 -14.22 16 8 H 0.08 2.25 8.03 -52.48 -0.42 1.83 16 9 C 0.02 0.36 2.39 -90.11 -0.22 0.15 16 10 H 0.04 0.84 5.38 -51.93 -0.28 0.56 16 11 C -0.12 -2.45 6.36 -25.61 -0.16 -2.61 16 12 C -0.14 -2.43 6.31 -25.55 -0.16 -2.59 16 13 C 0.07 1.21 2.69 -25.02 -0.07 1.14 16 14 H 0.07 1.13 6.26 -51.92 -0.32 0.80 16 15 O -0.30 -5.25 9.72 -19.59 -0.19 -5.44 16 16 C 0.11 1.68 6.67 -39.18 -0.26 1.42 16 17 C -0.19 -2.35 8.87 -39.44 -0.35 -2.70 16 18 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 19 C -0.14 -1.32 10.04 -39.57 -0.40 -1.72 16 20 C -0.12 -1.29 10.02 -39.54 -0.40 -1.68 16 21 C 0.06 0.84 7.31 -39.30 -0.29 0.55 16 22 F -0.13 -2.12 17.11 2.25 0.04 -2.08 16 23 C -0.10 -2.02 6.03 -24.74 -0.15 -2.16 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.50 7.83 -51.93 -0.41 1.09 16 27 H 0.05 0.81 7.73 -51.93 -0.40 0.40 16 28 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 29 H 0.14 1.67 5.55 -52.49 -0.29 1.38 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -29.93 285.41 -7.17 -37.10 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.23 Total: -0.07 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -3.25 Total: -23.84 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.77 Total: -26.28 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.19 Total: -5.44 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.61 Total: 16.31 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.93 -7.17 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.516 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds