Wall clock time and date at job start Mon Mar 30 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48504 * 109.46993 * 268.02912 * 3 2 1 5 5 H 1.48501 * 109.46988 * 28.02680 * 3 2 1 6 6 H 1.48496 * 109.47147 * 148.02720 * 3 2 1 7 7 C 1.37882 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99364 * 6.25267 * 7 2 1 9 9 C 1.50696 * 120.00176 * 186.24715 * 7 2 1 10 10 H 1.09000 * 110.43292 * 332.70635 * 9 7 2 11 11 C 1.54271 * 110.48247 * 95.24441 * 9 7 2 12 12 C 1.53874 * 106.63856 * 142.26456 * 11 9 7 13 13 C 1.54376 * 106.54519 * 0.03548 * 12 11 9 14 14 H 1.09008 * 110.62140 * 95.09888 * 13 12 11 15 15 O 1.42902 * 110.46446 * 217.68219 * 13 12 11 16 16 C 1.35953 * 117.00247 * 270.53571 * 15 13 12 17 17 C 1.38663 * 120.05952 * 5.44927 * 16 15 13 18 18 C 1.38190 * 119.96683 * 179.97438 * 17 16 15 19 19 C 1.38256 * 120.09304 * 0.02562 * 18 17 16 20 20 C 1.38262 * 120.13078 * 0.02562 * 19 18 17 21 21 C 1.38330 * 120.02428 * 359.69910 * 20 19 18 22 22 F 1.35103 * 120.04506 * 180.27677 * 21 20 19 23 23 C 1.54882 * 104.19809 * 336.35354 * 13 12 11 24 24 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.02978 * 261.57106 * 11 9 7 26 26 H 1.09000 * 110.03490 * 22.95957 * 11 9 7 27 27 H 1.08997 * 110.03595 * 119.30945 * 12 11 9 28 28 H 1.09003 * 110.03601 * 240.74250 * 12 11 9 29 29 H 1.08001 * 120.01860 * 359.97438 * 17 16 15 30 30 H 1.07996 * 119.95309 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.93370 * 179.97438 * 19 18 17 32 32 H 1.07993 * 119.98544 * 179.97438 * 20 19 18 33 33 H 1.08996 * 110.75726 * 279.65020 * 23 13 12 34 34 H 1.09003 * 110.91489 * 156.35569 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5384 2.0223 -1.3993 5 1 1.4264 2.6643 0.6579 6 1 3.5252 1.4525 0.7413 7 6 2.0046 -1.1941 0.0005 8 1 1.4693 -2.1267 -0.1009 9 6 3.5048 -1.1979 0.1425 10 1 3.9255 -0.2672 -0.2382 11 6 3.9070 -1.4088 1.6169 12 6 5.1574 -2.3055 1.6086 13 6 5.4720 -2.6074 0.1277 14 1 6.2131 -1.9071 -0.2579 15 8 5.9317 -3.9523 -0.0213 16 6 7.2699 -4.1633 0.0921 17 6 8.1095 -3.1204 0.4527 18 6 9.4694 -3.3372 0.5679 19 6 9.9943 -4.5927 0.3236 20 6 9.1610 -5.6352 -0.0373 21 6 7.7982 -5.4253 -0.1486 22 9 6.9828 -6.4450 -0.4957 23 6 4.1161 -2.4146 -0.5957 24 1 -0.4850 0.8400 -0.0004 25 1 4.1379 -0.4504 2.0817 26 1 3.0985 -1.9007 2.1578 27 1 5.9952 -1.7822 2.0694 28 1 4.9556 -3.2329 2.1446 29 1 7.7008 -2.1390 0.6435 30 1 10.1230 -2.5248 0.8492 31 1 11.0576 -4.7592 0.4140 32 1 9.5736 -6.6148 -0.2280 33 1 3.4858 -3.2957 -0.4761 34 1 4.2669 -2.1899 -1.6516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:03 Heat of formation + Delta-G solvation = -87.844127 kcal Electronic energy + Delta-G solvation = -17875.909154 eV Core-core repulsion = 14880.210971 eV Total energy + Delta-G solvation = -2995.698183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.80414 -41.23402 -39.10727 -37.44443 -34.48643 -31.66723 -31.06691 -30.32610 -29.08353 -25.90795 -23.88141 -23.44655 -21.34807 -20.96629 -19.60326 -18.99078 -17.94965 -17.52922 -17.05192 -16.58453 -16.34579 -15.79799 -15.38632 -15.20198 -15.05456 -14.75284 -14.19798 -13.91500 -13.73620 -13.35245 -12.99712 -12.83387 -12.67162 -12.20829 -12.11225 -12.03562 -11.73390 -11.62237 -11.50035 -11.29156 -10.98845 -10.66456 -9.90082 -9.16342 -8.28577 -6.32849 0.16172 0.31321 1.37664 1.38743 1.50330 2.12771 2.36857 2.64737 3.05306 3.28845 3.64759 3.78296 3.82054 3.97055 4.04218 4.22230 4.35445 4.42074 4.55660 4.57394 4.72567 4.83720 4.85416 4.96646 5.04158 5.15496 5.17815 5.25031 5.30354 5.45188 5.46565 5.54994 5.73818 5.80466 6.33321 6.41642 6.73428 7.31976 8.88740 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.041139 B = 0.005007 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.455998 B = 5590.939560 C = 6001.825642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.234 1.234 7 C -0.517 4.517 8 H 0.024 0.976 9 C 0.011 3.989 10 H 0.050 0.950 11 C -0.118 4.118 12 C -0.133 4.133 13 C 0.083 3.917 14 H 0.101 0.899 15 O -0.326 6.326 16 C 0.076 3.924 17 C -0.192 4.192 18 C -0.082 4.082 19 C -0.127 4.127 20 C -0.115 4.115 21 C 0.024 3.976 22 F -0.155 7.155 23 C -0.103 4.103 24 H 0.266 0.734 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.048 0.952 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.337 -4.562 2.026 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.157 1.157 7 C -0.555 4.555 8 H 0.042 0.958 9 C -0.007 4.007 10 H 0.068 0.932 11 C -0.157 4.157 12 C -0.170 4.170 13 C 0.027 3.973 14 H 0.119 0.881 15 O -0.240 6.240 16 C 0.030 3.970 17 C -0.210 4.210 18 C -0.100 4.100 19 C -0.145 4.145 20 C -0.133 4.133 21 C 0.004 3.996 22 F -0.134 7.134 23 C -0.141 4.141 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.066 0.934 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.978 -4.634 1.984 24.502 hybrid contribution -1.099 0.355 -0.162 1.167 sum 22.878 -4.279 1.822 23.346 Atomic orbital electron populations 1.70084 1.08574 1.28200 1.52434 1.26065 0.95509 1.03460 0.93899 0.85728 0.79833 0.77932 0.79462 1.19131 1.21558 1.15679 1.21250 0.91753 0.92905 1.49550 0.95762 1.19888 0.93576 0.94503 0.92778 0.93154 1.22336 0.95847 0.98729 0.98764 1.22618 0.98908 1.00203 0.95306 1.23591 0.96306 0.80411 0.96944 0.88133 1.86203 1.19668 1.31564 1.86604 1.19507 0.84130 0.94261 0.99105 1.21523 0.95157 0.98699 1.05628 1.21482 0.93619 0.98613 0.96237 1.21376 1.01490 0.91580 1.00010 1.21350 0.89158 1.02666 1.00148 1.17599 0.89591 0.82926 1.09436 1.91437 1.73286 1.58199 1.90439 1.22521 0.93379 0.99118 0.99098 0.92526 0.91903 0.93799 0.88980 0.92007 0.83367 0.81748 0.81254 0.82157 0.93362 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.95 42.68 27.13 68.60 1.86 44.54 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.23 -9.31 6.66 99.48 0.66 -8.65 16 7 C -0.52 -29.57 8.77 25.60 0.22 -29.34 16 8 H 0.02 1.57 8.03 -2.91 -0.02 1.55 16 9 C 0.01 0.52 2.39 -10.46 -0.03 0.49 16 10 H 0.05 2.14 5.38 -2.39 -0.01 2.13 16 11 C -0.12 -4.68 6.36 31.32 0.20 -4.48 16 12 C -0.13 -4.24 6.31 31.36 0.20 -4.04 16 13 C 0.08 2.73 2.69 31.70 0.09 2.82 16 14 H 0.10 2.76 6.26 -2.38 -0.01 2.74 16 15 O -0.33 -11.50 9.72 -93.02 -0.90 -12.40 16 16 C 0.08 2.21 6.67 22.53 0.15 2.36 16 17 C -0.19 -4.15 8.87 22.36 0.20 -3.95 16 18 C -0.08 -1.23 10.04 22.26 0.22 -1.00 16 19 C -0.13 -1.74 10.04 22.28 0.22 -1.52 16 20 C -0.11 -2.16 10.02 22.30 0.22 -1.93 16 21 C 0.02 0.67 7.31 22.45 0.16 0.83 16 22 F -0.15 -5.04 17.11 44.97 0.77 -4.27 16 23 C -0.10 -4.22 6.03 31.88 0.19 -4.02 16 24 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.04 1.92 7.83 -2.39 -0.02 1.90 16 27 H 0.09 2.30 7.73 -2.39 -0.02 2.28 16 28 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 29 H 0.15 2.88 5.55 -2.91 -0.02 2.86 16 30 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.05 2.19 8.03 -2.39 -0.02 2.17 16 34 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -70.14 285.41 5.60 -64.54 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.05 Total: 10.08 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 2.52 Total: -42.91 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.30 Total: -59.57 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.90 Total: -12.40 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.77 Total: -4.27 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.86 Total: 44.54 kcal Total: -70.14 5.60 -64.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.309 kcal (2) G-P(sol) polarization free energy of solvation -70.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds