Wall clock time and date at job start Mon Mar 30 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48503 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46784 * 60.00572 * 3 2 1 6 6 H 1.48499 * 109.47074 * 300.00270 * 3 2 1 7 7 C 1.37874 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99878 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.01475 * 300.06611 * 9 7 2 11 11 C 1.54267 * 110.03031 * 61.45824 * 9 7 2 12 12 C 1.54890 * 104.19560 * 142.89477 * 11 9 7 13 13 C 1.54890 * 102.74831 * 322.05663 * 12 11 9 14 14 H 1.08996 * 110.48357 * 279.26374 * 13 12 11 15 15 O 1.42900 * 110.48575 * 156.75230 * 13 12 11 16 16 C 1.35950 * 116.99910 * 85.06102 * 15 13 12 17 17 C 1.38663 * 120.06592 * 354.66312 * 16 15 13 18 18 C 1.38177 * 119.97238 * 179.71687 * 17 16 15 19 19 C 1.38267 * 120.09538 * 0.55545 * 18 17 16 20 20 C 1.38258 * 120.12112 * 359.71928 * 19 18 17 21 21 C 1.38330 * 120.03304 * 0.02562 * 20 19 18 22 22 F 1.35098 * 120.05039 * 180.02562 * 21 20 19 23 23 C 1.53871 * 110.03223 * 178.62350 * 9 7 2 24 24 H 0.96999 * 119.99287 * 179.97438 * 1 2 3 25 25 H 1.09002 * 110.48716 * 261.57590 * 11 9 7 26 26 H 1.09003 * 110.48552 * 24.08187 * 11 9 7 27 27 H 1.08996 * 110.75166 * 80.37195 * 12 11 9 28 28 H 1.08998 * 110.75546 * 203.74063 * 12 11 9 29 29 H 1.08006 * 120.01254 * 359.97378 * 17 16 15 30 30 H 1.08001 * 119.95714 * 180.27890 * 18 17 16 31 31 H 1.07994 * 119.93781 * 179.74181 * 19 18 17 32 32 H 1.08005 * 119.97992 * 180.02562 * 20 19 18 33 33 H 1.09004 * 110.03200 * 0.02562 * 23 9 7 34 34 H 1.09000 * 110.02906 * 121.43203 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 1.2126 6 1 1.8903 2.3965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6206 -2.5659 0.8860 11 6 0.3867 -2.6103 -1.2734 12 6 0.4703 -4.1079 -1.6598 13 6 1.9408 -4.4647 -1.3291 14 1 2.6018 -4.1416 -2.1332 15 8 2.0765 -5.8696 -1.1057 16 6 2.2571 -6.6541 -2.2012 17 6 2.1925 -6.1000 -3.4707 18 6 2.3822 -6.8981 -4.5826 19 6 2.6251 -8.2509 -4.4319 20 6 2.6847 -8.8085 -3.1681 21 6 2.5008 -8.0134 -2.0512 22 9 2.5595 -8.5578 -0.8161 23 6 2.2392 -3.6782 -0.0359 24 1 -0.4849 -0.8401 -0.0004 25 1 -0.6443 -2.3282 -1.0602 26 1 0.7955 -1.9858 -2.0679 27 1 -0.2164 -4.7013 -1.0562 28 1 0.2692 -4.2445 -2.7223 29 1 1.9980 -5.0444 -3.5902 30 1 2.3363 -6.4654 -5.5712 31 1 2.7689 -8.8730 -5.3028 32 1 2.8750 -9.8654 -3.0530 33 1 3.2638 -3.3064 -0.0526 34 1 2.0882 -4.3180 0.8335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:06 Heat of formation + Delta-G solvation = -75.510353 kcal Electronic energy + Delta-G solvation = -17960.234258 eV Core-core repulsion = 14965.070907 eV Total energy + Delta-G solvation = -2995.163351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.70549 -40.08120 -37.94146 -36.13007 -32.48046 -30.75212 -29.86407 -28.32181 -27.05854 -24.02434 -22.84695 -22.46500 -20.13486 -19.32834 -18.44385 -17.03760 -16.90481 -16.47798 -15.75371 -15.23972 -14.73345 -14.47140 -14.08267 -13.91932 -13.77623 -12.98094 -12.80475 -12.56027 -12.03206 -11.98345 -11.70300 -11.38094 -11.03506 -10.77147 -10.57622 -10.31724 -10.16058 -10.02654 -9.87109 -9.63805 -8.99303 -8.48314 -8.36594 -8.12374 -6.35571 -4.09292 1.06178 1.23846 3.29717 3.42078 3.45055 3.53829 3.58583 4.25439 4.50302 4.67396 4.79566 5.05773 5.12842 5.19053 5.25321 5.38770 5.42465 5.54968 5.92424 5.97034 5.98086 6.11656 6.24856 6.27746 6.30925 6.35403 6.47044 6.67658 6.70589 6.83994 6.98915 7.28423 7.55448 7.58404 8.19701 8.41192 8.86351 9.62780 11.01773 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.004779 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.977020 B = 5857.161552 C = 6062.912024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 1.071 2.929 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.596 4.596 8 H 0.051 0.949 9 C 0.032 3.968 10 H 0.024 0.976 11 C -0.109 4.109 12 C -0.148 4.148 13 C 0.079 3.921 14 H 0.075 0.925 15 O -0.302 6.302 16 C 0.112 3.888 17 C -0.185 4.185 18 C -0.089 4.089 19 C -0.141 4.141 20 C -0.119 4.119 21 C 0.057 3.943 22 F -0.135 7.135 23 C -0.100 4.100 24 H 0.273 0.727 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -14.094 -8.810 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.634 4.634 8 H 0.069 0.931 9 C 0.013 3.987 10 H 0.042 0.958 11 C -0.148 4.148 12 C -0.186 4.186 13 C 0.024 3.976 14 H 0.093 0.907 15 O -0.215 6.215 16 C 0.065 3.935 17 C -0.204 4.204 18 C -0.107 4.107 19 C -0.159 4.159 20 C -0.138 4.138 21 C 0.037 3.963 22 F -0.114 7.114 23 C -0.137 4.137 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.860 -12.496 -8.531 15.615 hybrid contribution 0.164 -1.634 0.011 1.642 sum 4.025 -14.130 -8.520 16.983 Atomic orbital electron populations 1.70744 1.06866 1.31157 1.46275 1.25781 0.96559 1.02524 0.93621 0.83510 0.74508 0.75009 0.76975 1.21562 1.21353 1.21402 1.22144 0.94020 0.91290 1.55975 0.93080 1.19385 0.92827 0.93004 0.93454 0.95821 1.22547 1.00454 0.91375 1.00386 1.23118 0.95413 0.99888 1.00162 1.23699 0.97433 0.75750 1.00739 0.90659 1.86224 1.85686 1.20306 1.29329 1.19150 0.96572 0.89915 0.87904 1.21382 1.06224 1.01712 0.91055 1.21031 0.97664 0.93556 0.98489 1.20858 1.03327 0.95283 0.96436 1.20966 1.01569 1.00059 0.91175 1.17057 1.09292 0.89193 0.80755 1.91487 1.94318 1.85666 1.39907 1.22274 1.01559 0.96087 0.93830 0.91489 0.92543 0.91804 0.91318 0.92468 0.84038 0.85234 0.85168 0.84443 0.91356 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.78 13.41 55.43 0.74 -26.04 16 2 C 0.02 0.54 5.32 -17.82 -0.09 0.45 16 3 Si 1.07 24.76 29.90 -169.99 -5.08 19.67 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.60 -16.23 8.38 -34.44 -0.29 -16.52 16 8 H 0.05 1.39 7.33 -52.49 -0.38 1.01 16 9 C 0.03 0.78 2.52 -90.65 -0.23 0.55 16 10 H 0.02 0.62 8.02 -51.93 -0.42 0.21 16 11 C -0.11 -2.42 5.24 -25.07 -0.13 -2.55 16 12 C -0.15 -2.72 6.21 -24.74 -0.15 -2.88 16 13 C 0.08 1.46 2.70 -25.07 -0.07 1.39 16 14 H 0.08 1.32 6.53 -51.93 -0.34 0.98 16 15 O -0.30 -5.56 9.73 -19.58 -0.19 -5.75 16 16 C 0.11 1.79 6.63 -39.18 -0.26 1.53 16 17 C -0.19 -2.52 8.67 -39.45 -0.34 -2.86 16 18 C -0.09 -0.97 10.04 -39.59 -0.40 -1.37 16 19 C -0.14 -1.40 10.04 -39.56 -0.40 -1.80 16 20 C -0.12 -1.35 10.02 -39.54 -0.40 -1.75 16 21 C 0.06 0.84 7.31 -39.30 -0.29 0.56 16 22 F -0.14 -2.18 17.11 2.25 0.04 -2.14 16 23 C -0.10 -2.11 6.21 -25.61 -0.16 -2.27 16 24 H 0.27 7.88 5.41 -40.82 -0.22 7.66 16 25 H 0.06 1.29 6.83 -51.93 -0.35 0.94 16 26 H 0.06 1.49 7.85 -51.93 -0.41 1.08 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.06 0.93 7.20 -51.93 -0.37 0.55 16 29 H 0.14 1.90 5.27 -52.48 -0.28 1.62 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.07 1.45 7.37 -51.93 -0.38 1.07 16 34 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 LS Contribution 282.94 15.07 4.26 4.26 Total: -1.00 -29.66 282.94 -7.49 -37.15 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.06 Total: 0.37 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -3.20 Total: -27.52 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.19 Total: -5.75 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.66 -7.49 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.355 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds