Wall clock time and date at job start Mon Mar 30 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48503 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46784 * 60.00572 * 3 2 1 6 6 H 1.48499 * 109.47074 * 300.00270 * 3 2 1 7 7 C 1.37874 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99878 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.01475 * 300.06611 * 9 7 2 11 11 C 1.54267 * 110.03031 * 61.45824 * 9 7 2 12 12 C 1.54890 * 104.19560 * 142.89477 * 11 9 7 13 13 C 1.54890 * 102.74831 * 322.05663 * 12 11 9 14 14 H 1.08996 * 110.48357 * 279.26374 * 13 12 11 15 15 O 1.42900 * 110.48575 * 156.75230 * 13 12 11 16 16 C 1.35950 * 116.99910 * 85.06102 * 15 13 12 17 17 C 1.38663 * 120.06592 * 354.66312 * 16 15 13 18 18 C 1.38177 * 119.97238 * 179.71687 * 17 16 15 19 19 C 1.38267 * 120.09538 * 0.55545 * 18 17 16 20 20 C 1.38258 * 120.12112 * 359.71928 * 19 18 17 21 21 C 1.38330 * 120.03304 * 0.02562 * 20 19 18 22 22 F 1.35098 * 120.05039 * 180.02562 * 21 20 19 23 23 C 1.53871 * 110.03223 * 178.62350 * 9 7 2 24 24 H 0.96999 * 119.99287 * 179.97438 * 1 2 3 25 25 H 1.09002 * 110.48716 * 261.57590 * 11 9 7 26 26 H 1.09003 * 110.48552 * 24.08187 * 11 9 7 27 27 H 1.08996 * 110.75166 * 80.37195 * 12 11 9 28 28 H 1.08998 * 110.75546 * 203.74063 * 12 11 9 29 29 H 1.08006 * 120.01254 * 359.97378 * 17 16 15 30 30 H 1.08001 * 119.95714 * 180.27890 * 18 17 16 31 31 H 1.07994 * 119.93781 * 179.74181 * 19 18 17 32 32 H 1.08005 * 119.97992 * 180.02562 * 20 19 18 33 33 H 1.09004 * 110.03200 * 0.02562 * 23 9 7 34 34 H 1.09000 * 110.02906 * 121.43203 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 1.2126 6 1 1.8903 2.3965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6206 -2.5659 0.8860 11 6 0.3867 -2.6103 -1.2734 12 6 0.4703 -4.1079 -1.6598 13 6 1.9408 -4.4647 -1.3291 14 1 2.6018 -4.1416 -2.1332 15 8 2.0765 -5.8696 -1.1057 16 6 2.2571 -6.6541 -2.2012 17 6 2.1925 -6.1000 -3.4707 18 6 2.3822 -6.8981 -4.5826 19 6 2.6251 -8.2509 -4.4319 20 6 2.6847 -8.8085 -3.1681 21 6 2.5008 -8.0134 -2.0512 22 9 2.5595 -8.5578 -0.8161 23 6 2.2392 -3.6782 -0.0359 24 1 -0.4849 -0.8401 -0.0004 25 1 -0.6443 -2.3282 -1.0602 26 1 0.7955 -1.9858 -2.0679 27 1 -0.2164 -4.7013 -1.0562 28 1 0.2692 -4.2445 -2.7223 29 1 1.9980 -5.0444 -3.5902 30 1 2.3363 -6.4654 -5.5712 31 1 2.7689 -8.8730 -5.3028 32 1 2.8750 -9.8654 -3.0530 33 1 3.2638 -3.3064 -0.0526 34 1 2.0882 -4.3180 0.8335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:05 Heat of formation + Delta-G solvation = -91.205360 kcal Electronic energy + Delta-G solvation = -17960.914844 eV Core-core repulsion = 14965.070907 eV Total energy + Delta-G solvation = -2995.843937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.84011 -41.31422 -39.22100 -37.65332 -34.46001 -31.70372 -30.95253 -30.09356 -28.68915 -25.97826 -24.02172 -23.47361 -21.64084 -21.13681 -19.63781 -18.94493 -18.14340 -17.58157 -16.94442 -16.42545 -16.16551 -15.71068 -15.65217 -15.41878 -15.25550 -14.39719 -14.21710 -13.87601 -13.81304 -13.08090 -12.92626 -12.78446 -12.71452 -12.41819 -12.10877 -11.92584 -11.79538 -11.71696 -11.53948 -11.51834 -10.54386 -10.46371 -9.94022 -9.21400 -8.57032 -6.31659 0.12284 0.26999 1.54348 1.62542 1.78863 2.04454 2.57727 2.60754 3.19827 3.23725 3.58924 3.63546 3.77263 3.94828 3.98483 4.19860 4.32098 4.36018 4.48530 4.55821 4.62159 4.72785 4.81227 4.88055 4.98703 5.06286 5.11796 5.18652 5.26650 5.41133 5.43551 5.59497 5.75149 6.08281 6.22955 6.33716 6.67269 7.48375 8.80840 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.004779 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.977020 B = 5857.161552 C = 6062.912024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.029 4.029 3 Si 1.117 2.883 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.608 4.608 8 H 0.047 0.953 9 C 0.022 3.978 10 H -0.006 1.006 11 C -0.099 4.099 12 C -0.133 4.133 13 C 0.093 3.907 14 H 0.087 0.913 15 O -0.324 6.324 16 C 0.075 3.925 17 C -0.194 4.194 18 C -0.083 4.083 19 C -0.124 4.124 20 C -0.113 4.113 21 C 0.028 3.972 22 F -0.152 7.152 23 C -0.097 4.097 24 H 0.264 0.736 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.165 0.835 33 H 0.063 0.937 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -15.358 -11.447 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.227 4.227 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.646 4.646 8 H 0.065 0.935 9 C 0.003 3.997 10 H 0.012 0.988 11 C -0.138 4.138 12 C -0.171 4.171 13 C 0.038 3.962 14 H 0.105 0.895 15 O -0.239 6.239 16 C 0.029 3.971 17 C -0.212 4.212 18 C -0.101 4.101 19 C -0.142 4.142 20 C -0.131 4.131 21 C 0.009 3.991 22 F -0.131 7.131 23 C -0.135 4.135 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.158 0.842 30 H 0.180 0.820 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.082 0.918 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.858 -13.794 -11.175 18.405 hybrid contribution -0.123 -1.374 0.769 1.579 sum 4.735 -15.167 -10.406 18.994 Atomic orbital electron populations 1.70849 1.07784 1.30728 1.48289 1.27156 0.96640 1.06120 0.92801 0.82925 0.74244 0.71532 0.77375 1.19825 1.20882 1.20414 1.22484 0.94075 0.92694 1.55347 0.93478 1.19390 0.93408 0.93521 0.93338 0.98831 1.22290 0.98782 0.94007 0.98690 1.22989 0.95618 0.96623 1.01852 1.23349 0.97381 0.76419 0.99071 0.89482 1.86147 1.86803 1.19775 1.31133 1.19483 0.99290 0.90235 0.88079 1.21506 1.06644 1.02080 0.91003 1.21474 0.95766 0.93854 0.98978 1.21387 1.00403 0.95316 0.97076 1.21371 1.00023 1.01115 0.90595 1.17540 1.11011 0.89390 0.81199 1.91436 1.94659 1.85824 1.41195 1.22106 1.00265 0.95408 0.95711 0.92513 0.94021 0.93128 0.91484 0.89573 0.84199 0.81958 0.81018 0.81760 0.91779 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.32 13.41 21.45 0.29 -56.03 16 2 C -0.03 -1.61 5.32 84.65 0.45 -1.16 16 3 Si 1.12 49.82 29.90 68.60 2.05 51.87 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.61 -33.87 8.38 25.60 0.21 -33.65 16 8 H 0.05 2.60 7.33 -2.91 -0.02 2.58 16 9 C 0.02 1.11 2.52 -10.81 -0.03 1.09 16 10 H -0.01 -0.36 8.02 -2.39 -0.02 -0.38 16 11 C -0.10 -4.51 5.24 31.67 0.17 -4.35 16 12 C -0.13 -4.87 6.21 31.89 0.20 -4.67 16 13 C 0.09 3.45 2.70 31.67 0.09 3.54 16 14 H 0.09 2.99 6.53 -2.39 -0.02 2.97 16 15 O -0.32 -12.02 9.73 -92.98 -0.90 -12.92 16 16 C 0.08 2.33 6.63 22.53 0.15 2.48 16 17 C -0.19 -4.83 8.67 22.36 0.19 -4.64 16 18 C -0.08 -1.45 10.04 22.26 0.22 -1.22 16 19 C -0.12 -1.86 10.04 22.28 0.22 -1.64 16 20 C -0.11 -2.19 10.02 22.30 0.22 -1.97 16 21 C 0.03 0.81 7.31 22.45 0.16 0.97 16 22 F -0.15 -4.94 17.11 44.97 0.77 -4.17 16 23 C -0.10 -4.22 6.21 31.32 0.19 -4.03 16 24 H 0.26 15.83 5.41 -92.71 -0.50 15.33 16 25 H 0.04 1.98 6.83 -2.39 -0.02 1.96 16 26 H 0.05 2.40 7.85 -2.39 -0.02 2.38 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.09 2.65 7.20 -2.39 -0.02 2.63 16 29 H 0.14 3.45 5.27 -2.91 -0.02 3.44 16 30 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.06 2.78 7.37 -2.38 -0.02 2.77 16 34 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 Total: -1.00 -66.39 282.94 6.03 -60.36 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.37 Total: 10.15 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 2.46 Total: -49.25 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.29 Total: -56.03 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.90 Total: -12.92 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.77 Total: -4.17 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Total: -66.39 6.03 -60.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.848 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds