Wall clock time and date at job start Mon Mar 30 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39858 * 125.41199 * 2 1 4 4 C 1.30524 * 110.04841 * 179.97438 * 3 2 1 5 5 O 1.35922 * 126.15317 * 180.02562 * 4 3 2 6 6 C 1.42900 * 117.00354 * 359.97438 * 5 4 3 7 7 C 1.50698 * 109.46884 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00454 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99610 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00196 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46869 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47086 * 119.99391 * 11 9 7 14 14 H 1.48495 * 109.47295 * 239.99987 * 11 9 7 15 15 C 1.46258 * 107.68356 * 0.02562 * 4 3 2 16 16 C 1.37061 * 125.41523 * 179.97438 * 2 1 3 17 17 C 1.39293 * 133.67917 * 0.05753 * 16 2 1 18 18 C 1.37600 * 119.92243 * 179.97438 * 17 16 2 19 19 C 1.38915 * 120.69638 * 359.97438 * 18 17 16 20 20 C 1.37739 * 120.44583 * 0.03010 * 19 18 17 21 21 F 1.35095 * 120.18185 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47181 * 270.03877 * 1 2 3 23 23 H 1.09001 * 109.47188 * 30.04448 * 1 2 3 24 24 H 1.08999 * 109.46964 * 150.03859 * 1 2 3 25 25 H 1.08995 * 109.46697 * 300.00013 * 6 5 4 26 26 H 1.08998 * 109.47137 * 59.99631 * 6 5 4 27 27 H 0.97003 * 119.99563 * 180.02562 * 10 9 7 28 28 H 1.07991 * 120.03913 * 359.97438 * 17 16 2 29 29 H 1.07999 * 119.65564 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.77614 * 179.74602 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2754 1.1399 0.0000 4 6 3.5340 0.7940 0.0005 5 8 4.5980 1.6399 0.0012 6 6 4.3136 3.0403 0.0007 7 6 5.6060 3.8153 0.0010 8 1 6.5502 3.2909 0.0018 9 6 5.5831 5.1939 0.0011 10 7 4.4334 5.8324 0.0006 11 14 7.1851 6.1547 0.0021 12 1 8.3297 5.2085 0.0032 13 1 7.2503 7.0097 -1.2104 14 1 7.2490 7.0094 1.2147 15 6 3.5932 -0.6673 0.0003 16 6 2.2593 -1.1170 0.0005 17 6 1.9957 -2.4848 0.0001 18 6 3.0369 -3.3844 0.0003 19 6 4.3545 -2.9442 0.0004 20 6 4.6401 -1.5967 0.0008 21 9 5.9234 -1.1745 0.0004 22 1 -0.3633 0.0007 1.0277 23 1 -0.3634 0.8896 -0.5145 24 1 -0.3633 -0.8903 -0.5132 25 1 3.7384 3.2938 -0.8897 26 1 3.7370 3.2942 0.8902 27 1 4.4173 6.8023 0.0003 28 1 0.9755 -2.8387 -0.0004 29 1 2.8277 -4.4439 -0.0004 30 1 5.1602 -3.6633 0.0047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436853.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:07 Heat of formation + Delta-G solvation = 7.033957 kcal Electronic energy + Delta-G solvation = -17517.207516 eV Core-core repulsion = 14422.083211 eV Total energy + Delta-G solvation = -3095.124304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.61543 -40.98409 -37.68950 -36.58564 -33.08105 -32.39484 -29.94197 -29.67726 -27.82934 -25.85496 -23.40586 -22.41769 -22.04764 -20.14810 -17.74923 -17.32329 -16.38362 -15.93341 -15.87638 -15.82906 -15.02670 -15.00040 -14.50792 -14.30862 -14.25355 -13.35910 -12.84605 -12.63567 -12.58210 -11.81365 -11.68895 -11.58732 -11.44426 -10.99339 -10.97246 -10.42986 -10.28778 -10.06237 -9.30457 -9.08074 -8.62801 -8.49269 -7.38139 -6.20837 -4.25379 0.95249 1.43935 2.54159 2.90623 3.25813 3.31789 3.38226 3.69167 3.79915 4.33011 4.37676 4.64587 4.67205 4.92590 5.14185 5.15890 5.26497 5.33590 5.47030 5.54783 5.75506 5.90686 6.11721 6.23805 6.33939 6.82474 7.01855 7.17769 7.21996 7.65363 7.86350 8.06627 8.40216 8.86168 9.39031 10.90188 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.029285 B = 0.005840 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.907367 B = 4793.436978 C = 5728.898317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.403 5.403 3 N -0.308 5.308 4 C 0.313 3.687 5 O -0.283 6.283 6 C 0.197 3.803 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.914 3.086 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.281 1.281 15 C -0.217 4.217 16 C 0.175 3.825 17 C -0.169 4.169 18 C -0.039 4.039 19 C -0.218 4.218 20 C 0.200 3.800 21 F -0.123 7.123 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.068 -17.341 -0.084 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.192 5.192 3 N -0.143 5.143 4 C 0.098 3.902 5 O -0.184 6.184 6 C 0.125 3.875 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.741 3.259 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.226 4.226 16 C 0.056 3.944 17 C -0.192 4.192 18 C -0.059 4.059 19 C -0.239 4.239 20 C 0.178 3.822 21 F -0.101 7.101 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.686 -16.072 -0.085 17.815 hybrid contribution 1.185 0.317 0.016 1.227 sum -6.501 -15.755 -0.069 17.044 Atomic orbital electron populations 1.21668 0.73945 1.04003 1.02775 1.47754 1.05525 1.00402 1.65568 1.77104 1.00786 1.06551 1.29873 1.21761 0.87125 0.88315 0.92963 1.86412 1.24616 1.21289 1.86085 1.20711 0.98645 0.70286 0.97856 1.21021 0.92163 0.90735 1.52482 0.90934 1.24937 0.97472 0.97058 0.94658 1.69991 1.24840 1.08756 1.49389 0.86176 0.82438 0.79546 0.77758 1.19269 1.20634 1.20641 1.19241 0.93306 0.90985 1.19081 1.18532 0.88777 0.89829 0.97218 1.19965 1.00063 0.88398 1.10763 1.20677 0.90890 0.99295 0.95066 1.20767 0.98250 0.92949 1.11929 1.17140 0.77477 0.91408 0.96200 1.91554 1.34900 1.90914 1.92769 0.91447 0.89344 0.90051 0.95580 0.95576 0.92390 0.85246 0.84594 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.28 11.39 59.85 0.68 1.97 16 2 N -0.40 -6.79 4.05 -65.47 -0.27 -7.06 16 3 N -0.31 -6.75 11.81 31.78 0.38 -6.37 16 4 C 0.31 7.23 8.14 -14.89 -0.12 7.11 16 5 O -0.28 -7.48 10.20 -19.49 -0.20 -7.68 16 6 C 0.20 5.65 5.38 36.00 0.19 5.84 16 7 C -0.53 -15.66 9.43 -34.44 -0.32 -15.99 16 8 H 0.07 2.13 7.81 -52.48 -0.41 1.72 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 11 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.22 -4.17 6.35 -105.06 -0.67 -4.83 16 16 C 0.17 2.79 6.86 -84.18 -0.58 2.21 16 17 C -0.17 -1.95 9.99 -39.42 -0.39 -2.35 16 18 C -0.04 -0.40 10.01 -39.56 -0.40 -0.79 16 19 C -0.22 -2.74 10.00 -39.51 -0.40 -3.13 16 20 C 0.20 3.40 7.34 -39.11 -0.29 3.11 16 21 F -0.12 -2.31 17.28 2.25 0.04 -2.28 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 278.83 15.07 4.20 4.20 Total: -1.00 -33.86 278.83 -5.44 -39.30 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -2.93 Total: -5.73 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.38 Total: -5.18 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.85 Total: -39.47 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.20 Total: -7.68 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.86 -5.44 -39.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436853.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.337 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds