Wall clock time and date at job start Mon Mar 30 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39858 * 125.41199 * 2 1 4 4 C 1.30524 * 110.04841 * 179.97438 * 3 2 1 5 5 O 1.35922 * 126.15317 * 180.02562 * 4 3 2 6 6 C 1.42900 * 117.00354 * 359.97438 * 5 4 3 7 7 C 1.50698 * 109.46884 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00454 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99610 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00196 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46869 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47086 * 119.99391 * 11 9 7 14 14 H 1.48495 * 109.47295 * 239.99987 * 11 9 7 15 15 C 1.46258 * 107.68356 * 0.02562 * 4 3 2 16 16 C 1.37061 * 125.41523 * 179.97438 * 2 1 3 17 17 C 1.39293 * 133.67917 * 0.05753 * 16 2 1 18 18 C 1.37600 * 119.92243 * 179.97438 * 17 16 2 19 19 C 1.38915 * 120.69638 * 359.97438 * 18 17 16 20 20 C 1.37739 * 120.44583 * 0.03010 * 19 18 17 21 21 F 1.35095 * 120.18185 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47181 * 270.03877 * 1 2 3 23 23 H 1.09001 * 109.47188 * 30.04448 * 1 2 3 24 24 H 1.08999 * 109.46964 * 150.03859 * 1 2 3 25 25 H 1.08995 * 109.46697 * 300.00013 * 6 5 4 26 26 H 1.08998 * 109.47137 * 59.99631 * 6 5 4 27 27 H 0.97003 * 119.99563 * 180.02562 * 10 9 7 28 28 H 1.07991 * 120.03913 * 359.97438 * 17 16 2 29 29 H 1.07999 * 119.65564 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.77614 * 179.74602 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2754 1.1399 0.0000 4 6 3.5340 0.7940 0.0005 5 8 4.5980 1.6399 0.0012 6 6 4.3136 3.0403 0.0007 7 6 5.6060 3.8153 0.0010 8 1 6.5502 3.2909 0.0018 9 6 5.5831 5.1939 0.0011 10 7 4.4334 5.8324 0.0006 11 14 7.1851 6.1547 0.0021 12 1 8.3297 5.2085 0.0032 13 1 7.2503 7.0097 -1.2104 14 1 7.2490 7.0094 1.2147 15 6 3.5932 -0.6673 0.0003 16 6 2.2593 -1.1170 0.0005 17 6 1.9957 -2.4848 0.0001 18 6 3.0369 -3.3844 0.0003 19 6 4.3545 -2.9442 0.0004 20 6 4.6401 -1.5967 0.0008 21 9 5.9234 -1.1745 0.0004 22 1 -0.3633 0.0007 1.0277 23 1 -0.3634 0.8896 -0.5145 24 1 -0.3633 -0.8903 -0.5132 25 1 3.7384 3.2938 -0.8897 26 1 3.7370 3.2942 0.8902 27 1 4.4173 6.8023 0.0003 28 1 0.9755 -2.8387 -0.0004 29 1 2.8277 -4.4439 -0.0004 30 1 5.1602 -3.6633 0.0047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436853.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:07 Heat of formation + Delta-G solvation = -18.223253 kcal Electronic energy + Delta-G solvation = -17518.302751 eV Core-core repulsion = 14422.083211 eV Total energy + Delta-G solvation = -3096.219539 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.91513 -42.32133 -39.46308 -37.82589 -35.19491 -33.83146 -31.08780 -30.83721 -29.99309 -27.07188 -25.30088 -23.87173 -23.26840 -21.64488 -19.26224 -18.92445 -18.22695 -17.36404 -17.32708 -17.09250 -16.61456 -16.46552 -16.15194 -15.81524 -15.40363 -15.05058 -14.18059 -13.92839 -13.78108 -13.44384 -13.13214 -13.06979 -12.67840 -12.65501 -12.61945 -12.32608 -11.93008 -11.74446 -11.51324 -10.83430 -10.41685 -9.86412 -8.65780 -8.44989 -6.62043 -0.22158 0.35096 1.29321 1.36536 1.36784 1.38756 1.53875 2.13698 2.41344 2.59185 2.88847 3.13534 3.47313 3.54580 3.95470 4.12208 4.32172 4.39341 4.43146 4.47734 4.69626 4.75450 4.83707 4.84791 5.11035 5.18912 5.35807 5.41798 5.67755 5.79486 6.08573 6.35601 6.45780 6.66423 7.09867 8.68064 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.029285 B = 0.005840 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.907367 B = 4793.436978 C = 5728.898317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.401 5.401 3 N -0.343 5.343 4 C 0.264 3.736 5 O -0.306 6.306 6 C 0.222 3.778 7 C -0.562 4.562 8 H 0.068 0.932 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.996 3.004 12 H -0.263 1.263 13 H -0.266 1.266 14 H -0.266 1.266 15 C -0.252 4.252 16 C 0.165 3.835 17 C -0.148 4.148 18 C -0.020 4.020 19 C -0.190 4.190 20 C 0.150 3.850 21 F -0.148 7.148 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.127 0.873 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.276 0.724 28 H 0.180 0.820 29 H 0.196 0.804 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -20.506 -0.100 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.193 5.193 3 N -0.177 5.177 4 C 0.050 3.950 5 O -0.208 6.208 6 C 0.149 3.851 7 C -0.599 4.599 8 H 0.086 0.914 9 C -0.188 4.188 10 N -0.563 5.563 11 Si 0.817 3.183 12 H -0.187 1.187 13 H -0.191 1.191 14 H -0.191 1.191 15 C -0.261 4.261 16 C 0.048 3.952 17 C -0.170 4.170 18 C -0.040 4.040 19 C -0.210 4.210 20 C 0.128 3.872 21 F -0.126 7.126 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.146 0.854 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.085 0.915 28 H 0.197 0.803 29 H 0.213 0.787 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.574 -19.272 -0.100 21.093 hybrid contribution 1.228 1.056 0.023 1.620 sum -7.346 -18.216 -0.077 19.642 Atomic orbital electron populations 1.22179 0.70703 1.06026 1.04548 1.48109 1.06911 0.99272 1.64994 1.76852 1.01281 1.10462 1.29114 1.22151 0.86917 0.89875 0.96032 1.86304 1.26910 1.20178 1.87433 1.20144 0.97718 0.72275 0.95011 1.21322 0.92177 0.91958 1.54429 0.91368 1.26073 1.01967 0.97684 0.93047 1.70103 1.27524 1.09643 1.49049 0.84963 0.76915 0.77758 0.78684 1.18661 1.19076 1.19095 1.19562 0.96067 0.89013 1.21477 1.19063 0.86984 0.91385 0.97764 1.20642 1.03071 0.85746 1.07525 1.21406 0.89001 1.01901 0.91728 1.21316 1.00741 0.91008 1.07935 1.17678 0.76340 0.93089 1.00064 1.91479 1.36275 1.91436 1.93450 0.89738 0.89943 0.85435 0.98439 0.98454 0.91520 0.80319 0.78696 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.07 11.39 127.77 1.46 3.53 16 2 N -0.40 -13.48 4.05 -361.06 -1.46 -14.95 16 3 N -0.34 -16.13 11.81 -166.94 -1.97 -18.11 16 4 C 0.26 13.29 8.14 86.97 0.71 14.00 16 5 O -0.31 -17.84 10.20 -92.67 -0.95 -18.78 16 6 C 0.22 13.91 5.38 71.24 0.38 14.29 16 7 C -0.56 -35.54 9.43 25.60 0.24 -35.30 16 8 H 0.07 4.25 7.81 -2.91 -0.02 4.23 16 9 C 0.01 0.71 5.46 84.66 0.46 1.17 16 10 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 11 Si 1.00 45.61 29.54 68.60 2.03 47.64 16 12 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 C -0.25 -10.09 6.35 -20.15 -0.13 -10.22 16 16 C 0.17 5.05 6.86 39.20 0.27 5.32 16 17 C -0.15 -2.62 9.99 22.37 0.22 -2.39 16 18 C -0.02 -0.29 10.01 22.28 0.22 -0.07 16 19 C -0.19 -4.10 10.00 22.31 0.22 -3.88 16 20 C 0.15 5.18 7.34 22.58 0.17 5.34 16 21 F -0.15 -5.92 17.28 44.97 0.78 -5.14 16 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.13 1.35 8.13 -2.39 -0.02 1.33 16 25 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.18 1.47 8.06 -2.92 -0.02 1.45 16 29 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 30 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -83.70 278.83 4.10 -79.61 By element: Atomic # 1 Polarization: -5.94 SS G_CDS: 1.16 Total: -4.78 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.23 Total: -8.20 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -3.15 Total: -90.35 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.95 Total: -18.78 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.78 Total: -5.14 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -83.70 4.10 -79.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436853.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.383 kcal (2) G-P(sol) polarization free energy of solvation -83.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds