Wall clock time and date at job start Mon Mar 30 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99769 * 2 1 4 4 C 1.50701 * 109.46890 * 66.05025 * 3 2 1 5 5 H 1.07996 * 120.00081 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00037 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00368 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99585 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.47068 * 90.00056 * 8 6 4 10 10 H 1.48499 * 109.46671 * 209.99555 * 8 6 4 11 11 H 1.48493 * 109.47226 * 329.99969 * 8 6 4 12 12 C 1.38775 * 110.99758 * 236.05292 * 2 1 3 13 13 N 1.30414 * 126.38523 * 123.92960 * 12 2 1 14 14 O 1.41334 * 109.62453 * 179.97438 * 13 12 2 15 15 C 1.34936 * 109.47719 * 359.97438 * 14 13 12 16 16 C 1.40268 * 107.24271 * 0.02562 * 15 14 13 17 17 C 1.39538 * 119.94408 * 180.02562 * 16 15 14 18 18 C 1.37688 * 119.74671 * 359.67806 * 17 16 15 19 19 C 1.38723 * 120.35131 * 0.59773 * 18 17 16 20 20 C 1.38017 * 120.54855 * 359.41981 * 19 18 17 21 21 F 1.35098 * 120.04999 * 180.25842 * 20 19 18 22 22 H 1.09004 * 109.46671 * 183.94972 * 1 2 3 23 23 H 1.08997 * 109.46822 * 303.94717 * 1 2 3 24 24 H 1.08997 * 109.46820 * 63.95430 * 1 2 3 25 25 H 1.08998 * 109.46590 * 186.04738 * 3 2 1 26 26 H 1.08997 * 109.47162 * 306.04655 * 3 2 1 27 27 H 0.96998 * 120.00818 * 180.02562 * 7 6 4 28 28 H 1.07999 * 120.12872 * 180.02562 * 17 16 15 29 29 H 1.07994 * 119.83004 * 180.31610 * 18 17 16 30 30 H 1.08002 * 119.72780 * 179.70189 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 1.7144 3.9389 2.6619 8 14 3.0007 4.2758 0.2314 9 1 2.0640 4.9804 -0.6805 10 1 3.8878 5.2668 0.8919 11 1 3.8237 3.3171 -0.5487 12 6 1.9663 -0.7235 -1.0748 13 7 2.7907 -0.2869 -1.9862 14 8 3.0636 -1.3187 -2.9127 15 6 2.3849 -2.4306 -2.5608 16 6 1.6625 -2.1261 -1.3977 17 6 0.8607 -3.0997 -0.8008 18 6 0.7777 -4.3544 -1.3619 19 6 1.4962 -4.6582 -2.5090 20 6 2.2937 -3.7056 -3.1101 21 9 2.9850 -4.0109 -4.2300 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3633 0.5739 0.8525 24 1 -0.3633 0.4512 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 1.9889 4.8550 2.8240 28 1 0.3029 -2.8684 0.0946 29 1 0.1536 -5.1074 -0.9039 30 1 1.4274 -5.6470 -2.9378 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451109.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:13 Heat of formation + Delta-G solvation = 34.460313 kcal Electronic energy + Delta-G solvation = -17662.916656 eV Core-core repulsion = 14568.981648 eV Total energy + Delta-G solvation = -3093.935008 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.99869 -41.61379 -37.74488 -37.42663 -33.00032 -31.92091 -30.43570 -30.10227 -28.26328 -25.66055 -23.61299 -22.91196 -21.98880 -20.00688 -18.04579 -17.67112 -16.88572 -16.36490 -16.33062 -15.70052 -15.23981 -14.85115 -14.60652 -14.27213 -14.19502 -13.64485 -13.12816 -12.48153 -12.23592 -12.15167 -12.03988 -11.90218 -11.43453 -11.25577 -11.08385 -10.76353 -10.52489 -9.99942 -9.54736 -9.12315 -8.78207 -8.67636 -8.03334 -6.21927 -4.23623 0.48689 0.99128 2.14704 2.61292 3.22692 3.30252 3.31868 3.38299 3.56628 4.01587 4.30961 4.36805 4.52575 4.80036 4.86345 4.93622 5.11366 5.35208 5.53375 5.65840 5.73620 5.78700 5.96082 6.03871 6.27023 6.37753 6.54022 6.58841 7.06462 7.22021 7.56203 7.64236 8.35587 8.80368 9.36883 10.89761 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.039042 B = 0.005749 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.008087 B = 4868.875904 C = 5485.833319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.434 5.434 3 C 0.159 3.841 4 C -0.526 4.526 5 H 0.086 0.914 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.868 3.132 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.261 1.261 12 C 0.313 3.687 13 N -0.326 5.326 14 O -0.094 6.094 15 C 0.058 3.942 16 C -0.157 4.157 17 C -0.040 4.040 18 C -0.132 4.132 19 C -0.098 4.098 20 C 0.085 3.915 21 F -0.132 7.132 22 H 0.065 0.935 23 H 0.105 0.895 24 H 0.036 0.964 25 H 0.045 0.955 26 H 0.008 0.992 27 H 0.268 0.732 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -16.223 -8.361 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.156 5.156 3 C 0.035 3.965 4 C -0.564 4.564 5 H 0.104 0.896 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.695 3.305 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.186 1.186 12 C 0.042 3.958 13 N -0.084 5.084 14 O -0.098 6.098 15 C 0.002 3.998 16 C -0.162 4.162 17 C -0.060 4.060 18 C -0.151 4.151 19 C -0.118 4.118 20 C 0.064 3.936 21 F -0.111 7.111 22 H 0.083 0.917 23 H 0.124 0.876 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.077 0.923 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.015 -15.285 -8.386 17.693 hybrid contribution 0.183 0.373 -1.045 1.125 sum -2.833 -14.911 -9.431 17.869 Atomic orbital electron populations 1.22498 0.83003 1.02123 1.03420 1.58865 1.09767 1.18324 1.28666 1.20468 0.96739 0.80639 0.98668 1.20849 1.37284 0.97739 1.00488 0.89591 1.24788 0.95249 0.97116 0.95365 1.69856 1.45873 1.13432 1.23673 0.86942 0.80972 0.80445 0.82161 1.19941 1.20723 1.18564 1.23157 0.93053 0.91314 0.88295 1.80521 1.24311 1.02175 1.01417 1.89226 1.59838 1.16394 1.44370 1.20140 0.94823 0.89822 0.94991 1.20328 1.04473 0.93813 0.97612 1.20894 0.95097 0.91251 0.98709 1.20853 1.01263 0.96842 0.96111 1.21077 0.95637 0.98742 0.96371 1.16438 0.99744 0.89998 0.87434 1.91517 1.77573 1.93190 1.48811 0.91682 0.87625 0.94517 0.93656 0.97458 0.92254 0.83801 0.83817 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.22 60.07 0.55 1.15 16 2 N -0.43 -8.87 4.82 -180.24 -0.87 -9.74 16 3 C 0.16 3.83 3.27 -4.97 -0.02 3.82 16 4 C -0.53 -14.22 9.01 -34.44 -0.31 -14.53 16 5 H 0.09 2.45 7.37 -52.49 -0.39 2.06 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 8 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 12 C 0.31 6.10 6.74 -153.65 -1.03 5.06 16 13 N -0.33 -6.95 11.77 32.51 0.38 -6.57 16 14 O -0.09 -1.84 12.06 7.36 0.09 -1.75 16 15 C 0.06 0.95 7.45 -38.49 -0.29 0.67 16 16 C -0.16 -2.50 6.06 -105.06 -0.64 -3.14 16 17 C -0.04 -0.46 9.41 -39.30 -0.37 -0.83 16 18 C -0.13 -1.18 10.02 -39.60 -0.40 -1.58 16 19 C -0.10 -0.95 10.00 -39.48 -0.39 -1.34 16 20 C 0.08 1.13 7.31 -39.33 -0.29 0.85 16 21 F -0.13 -1.83 17.27 2.25 0.04 -1.79 16 22 H 0.06 0.84 5.92 -51.93 -0.31 0.53 16 23 H 0.11 1.86 6.76 -51.93 -0.35 1.51 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 1.16 6.81 -51.93 -0.35 0.81 16 26 H 0.01 0.18 7.55 -51.93 -0.39 -0.21 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.14 1.41 6.81 -52.49 -0.36 1.06 16 29 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 265.84 15.07 4.01 4.01 Total: -1.00 -31.10 265.84 -6.11 -37.21 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: -2.58 Total: -4.72 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.28 Total: -7.79 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.29 Total: -41.75 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: 0.09 Total: -1.75 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.10 -6.11 -37.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451109.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.672 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds