Wall clock time and date at job start Mon Mar 30 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99769 * 2 1 4 4 C 1.50701 * 109.46890 * 66.05025 * 3 2 1 5 5 H 1.07996 * 120.00081 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00037 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00368 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99585 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.47068 * 90.00056 * 8 6 4 10 10 H 1.48499 * 109.46671 * 209.99555 * 8 6 4 11 11 H 1.48493 * 109.47226 * 329.99969 * 8 6 4 12 12 C 1.38775 * 110.99758 * 236.05292 * 2 1 3 13 13 N 1.30414 * 126.38523 * 123.92960 * 12 2 1 14 14 O 1.41334 * 109.62453 * 179.97438 * 13 12 2 15 15 C 1.34936 * 109.47719 * 359.97438 * 14 13 12 16 16 C 1.40268 * 107.24271 * 0.02562 * 15 14 13 17 17 C 1.39538 * 119.94408 * 180.02562 * 16 15 14 18 18 C 1.37688 * 119.74671 * 359.67806 * 17 16 15 19 19 C 1.38723 * 120.35131 * 0.59773 * 18 17 16 20 20 C 1.38017 * 120.54855 * 359.41981 * 19 18 17 21 21 F 1.35098 * 120.04999 * 180.25842 * 20 19 18 22 22 H 1.09004 * 109.46671 * 183.94972 * 1 2 3 23 23 H 1.08997 * 109.46822 * 303.94717 * 1 2 3 24 24 H 1.08997 * 109.46820 * 63.95430 * 1 2 3 25 25 H 1.08998 * 109.46590 * 186.04738 * 3 2 1 26 26 H 1.08997 * 109.47162 * 306.04655 * 3 2 1 27 27 H 0.96998 * 120.00818 * 180.02562 * 7 6 4 28 28 H 1.07999 * 120.12872 * 180.02562 * 17 16 15 29 29 H 1.07994 * 119.83004 * 180.31610 * 18 17 16 30 30 H 1.08002 * 119.72780 * 179.70189 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 1.7144 3.9389 2.6619 8 14 3.0007 4.2758 0.2314 9 1 2.0640 4.9804 -0.6805 10 1 3.8878 5.2668 0.8919 11 1 3.8237 3.3171 -0.5487 12 6 1.9663 -0.7235 -1.0748 13 7 2.7907 -0.2869 -1.9862 14 8 3.0636 -1.3187 -2.9127 15 6 2.3849 -2.4306 -2.5608 16 6 1.6625 -2.1261 -1.3977 17 6 0.8607 -3.0997 -0.8008 18 6 0.7777 -4.3544 -1.3619 19 6 1.4962 -4.6582 -2.5090 20 6 2.2937 -3.7056 -3.1101 21 9 2.9850 -4.0109 -4.2300 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3633 0.5739 0.8525 24 1 -0.3633 0.4512 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 1.9889 4.8550 2.8240 28 1 0.3029 -2.8684 0.0946 29 1 0.1536 -5.1074 -0.9039 30 1 1.4274 -5.6470 -2.9378 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451109.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:12 Heat of formation + Delta-G solvation = 13.648626 kcal Electronic energy + Delta-G solvation = -17663.819119 eV Core-core repulsion = 14568.981648 eV Total energy + Delta-G solvation = -3094.837471 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.01425 -42.87402 -39.11071 -38.63231 -34.97716 -33.46761 -31.56095 -31.10303 -30.11837 -27.17916 -24.90837 -23.94065 -23.59931 -21.44394 -19.40535 -19.00143 -18.60754 -17.60291 -17.35832 -16.89525 -16.53724 -16.36577 -16.15857 -15.77101 -15.34665 -15.15202 -14.54938 -14.18450 -13.71318 -13.27493 -13.10240 -13.07641 -13.00592 -12.77547 -12.56862 -12.40997 -12.15403 -11.96207 -11.61756 -10.89300 -10.15544 -10.01163 -9.37824 -8.39348 -6.44486 -0.55426 0.00960 0.84863 1.26627 1.30728 1.36505 1.41975 2.22236 2.25238 2.38008 2.93293 2.93573 3.19035 3.54362 3.66030 3.90120 4.07491 4.23145 4.35383 4.49839 4.56935 4.64982 4.73087 4.93176 4.95471 5.07771 5.19423 5.27103 5.37740 5.64677 5.82807 6.19550 6.28946 6.60690 7.19347 8.75337 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.039042 B = 0.005749 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.008087 B = 4868.875904 C = 5485.833319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.443 5.443 3 C 0.173 3.827 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.030 3.970 7 N -0.929 5.929 8 Si 0.925 3.075 9 H -0.263 1.263 10 H -0.273 1.273 11 H -0.266 1.266 12 C 0.306 3.694 13 N -0.375 5.375 14 O -0.116 6.116 15 C 0.023 3.977 16 C -0.173 4.173 17 C -0.039 4.039 18 C -0.104 4.104 19 C -0.070 4.070 20 C 0.067 3.933 21 F -0.140 7.140 22 H 0.108 0.892 23 H 0.090 0.910 24 H 0.038 0.962 25 H 0.025 0.975 26 H 0.002 0.998 27 H 0.272 0.728 28 H 0.166 0.834 29 H 0.197 0.803 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -19.318 -8.912 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.165 5.165 3 C 0.047 3.953 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.170 4.170 7 N -0.569 5.569 8 Si 0.750 3.250 9 H -0.188 1.188 10 H -0.198 1.198 11 H -0.191 1.191 12 C 0.036 3.964 13 N -0.133 5.133 14 O -0.122 6.122 15 C -0.031 4.031 16 C -0.177 4.177 17 C -0.059 4.059 18 C -0.122 4.122 19 C -0.090 4.090 20 C 0.046 3.954 21 F -0.119 7.119 22 H 0.127 0.873 23 H 0.109 0.891 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.020 0.980 27 H 0.081 0.919 28 H 0.183 0.817 29 H 0.214 0.786 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.395 -18.399 -8.940 20.923 hybrid contribution 0.516 1.088 -0.867 1.483 sum -3.879 -17.311 -9.807 20.270 Atomic orbital electron populations 1.22611 0.80858 1.04722 1.02781 1.58817 1.11679 1.16161 1.29877 1.20074 0.95599 0.82905 0.96701 1.21012 1.36312 0.97772 1.01069 0.91839 1.25503 0.96264 0.98133 0.97105 1.69955 1.47417 1.14081 1.25407 0.86035 0.79860 0.79210 0.79923 1.18793 1.19800 1.19087 1.23312 0.92534 0.93018 0.87550 1.80380 1.25627 1.04375 1.02934 1.89124 1.61230 1.17484 1.44387 1.20663 0.95868 0.90207 0.96340 1.20316 1.06474 0.92713 0.98237 1.21309 0.94084 0.91329 0.99190 1.21484 0.99699 0.96313 0.94662 1.21700 0.92551 0.99295 0.95436 1.16896 1.01000 0.89641 0.87826 1.91496 1.78021 1.93076 1.49313 0.87340 0.89112 0.94347 0.95678 0.97977 0.91907 0.81652 0.78578 0.78955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.16 9.22 127.69 1.18 2.33 16 2 N -0.44 -18.33 4.82 -724.15 -3.49 -21.82 16 3 C 0.17 8.57 3.27 85.56 0.28 8.85 16 4 C -0.52 -29.13 9.01 25.60 0.23 -28.90 16 5 H 0.06 3.74 7.37 -2.91 -0.02 3.72 16 6 C 0.03 1.72 5.47 84.66 0.46 2.18 16 7 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 8 Si 0.93 44.67 27.47 68.60 1.88 46.55 16 9 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.99 6.54 99.48 0.65 -12.34 16 12 C 0.31 12.10 6.74 135.83 0.91 13.02 16 13 N -0.37 -16.70 11.77 -51.04 -0.60 -17.30 16 14 O -0.12 -4.75 12.06 28.73 0.35 -4.40 16 15 C 0.02 0.76 7.45 22.98 0.17 0.94 16 16 C -0.17 -5.26 6.06 -20.15 -0.12 -5.39 16 17 C -0.04 -0.75 9.41 22.45 0.21 -0.54 16 18 C -0.10 -1.19 10.02 22.26 0.22 -0.97 16 19 C -0.07 -0.98 10.00 22.33 0.22 -0.75 16 20 C 0.07 1.65 7.31 22.43 0.16 1.81 16 21 F -0.14 -3.70 17.27 44.97 0.78 -2.92 16 22 H 0.11 2.52 5.92 -2.39 -0.01 2.50 16 23 H 0.09 3.23 6.76 -2.39 -0.02 3.21 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.03 1.34 6.81 -2.39 -0.02 1.33 16 26 H 0.00 0.12 7.55 -2.39 -0.02 0.10 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.17 2.42 6.81 -2.91 -0.02 2.40 16 29 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 30 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -72.49 265.84 4.27 -68.22 By element: Atomic # 1 Polarization: -6.61 SS G_CDS: 1.12 Total: -5.49 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 3.94 Total: -7.41 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -3.79 Total: -94.55 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.35 Total: -4.40 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -72.49 4.27 -68.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451109.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.869 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds