Wall clock time and date at job start Mon Mar 30 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32567 * 1 3 3 C 1.50703 * 119.99877 * 2 1 4 4 C 1.47817 * 119.99809 * 180.02562 * 2 1 3 5 5 C 1.39534 * 120.13288 * 115.00388 * 4 2 1 6 6 C 1.38078 * 119.83798 * 180.02562 * 5 4 2 7 7 Cl 1.73596 * 119.93819 * 179.97438 * 6 5 4 8 8 C 1.38479 * 120.11700 * 359.97303 * 6 5 4 9 9 C 1.38304 * 120.27259 * 0.29883 * 8 6 5 10 10 C 1.50696 * 119.92044 * 179.72244 * 9 8 6 11 11 H 1.08997 * 109.47126 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47263 * 59.99993 * 10 9 8 13 13 C 1.50708 * 109.47343 * 300.00007 * 10 9 8 14 14 H 1.08001 * 119.99889 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99906 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00025 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99859 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47072 * 89.99684 * 17 15 13 19 19 H 1.48492 * 109.47161 * 210.00143 * 17 15 13 20 20 H 1.48499 * 109.47055 * 330.00033 * 17 15 13 21 21 C 1.38000 * 120.15476 * 359.44600 * 9 8 6 22 22 H 1.08003 * 119.99729 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99599 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46824 * 269.99522 * 3 2 1 25 25 H 1.08997 * 109.47368 * 29.99892 * 3 2 1 26 26 H 1.09002 * 109.47037 * 150.00571 * 3 2 1 27 27 H 1.07994 * 120.08331 * 0.03751 * 5 4 2 28 28 H 1.08002 * 119.86012 * 180.02562 * 8 6 5 29 29 H 1.08994 * 109.47504 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46923 * 299.99969 * 12 10 9 31 31 H 1.09003 * 109.47195 * 59.99943 * 12 10 9 32 32 H 0.96998 * 119.99871 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.06124 * 180.25579 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 6 2.0647 -1.2802 -0.0006 5 6 2.8567 -1.6313 -1.0944 6 6 3.5440 -2.8288 -1.0887 7 17 4.5295 -3.2686 -2.4485 8 6 3.4486 -3.6796 -0.0003 9 6 2.6605 -3.3389 1.0840 10 6 2.5574 -4.2735 2.2616 11 1 1.8978 -3.8397 3.0131 12 6 3.9466 -4.4878 2.8658 13 6 1.9985 -5.5967 1.8054 14 1 1.7438 -5.7460 0.7665 15 6 1.8132 -6.6169 2.7141 16 7 2.1239 -6.4353 3.9790 17 14 1.1211 -8.2572 2.1485 18 1 2.2355 -9.1523 1.7461 19 1 0.3601 -8.8828 3.2596 20 1 0.2175 -8.0402 0.9903 21 6 1.9729 -2.1424 1.0925 22 1 -0.5400 0.9354 0.0004 23 1 -0.5399 -0.9353 0.0004 24 1 2.2609 1.6197 -1.0277 25 1 1.4901 2.0648 0.5138 26 1 3.0316 1.1748 0.5138 27 1 2.9321 -0.9680 -1.9433 28 1 3.9883 -4.6151 -0.0001 29 1 3.8722 -5.1642 3.7172 30 1 4.6066 -4.9214 2.1144 31 1 4.3509 -3.5309 3.1958 32 1 1.9932 -7.1529 4.6184 33 1 1.3612 -1.8760 1.9417 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260463048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:00 Heat of formation + Delta-G solvation = 11.939094 kcal Electronic energy + Delta-G solvation = -15594.754522 eV Core-core repulsion = 13031.719639 eV Total energy + Delta-G solvation = -2563.034883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.12012 -36.22987 -35.55481 -33.77669 -31.38262 -29.66506 -28.27364 -27.09563 -25.17702 -23.08267 -22.17026 -20.29285 -18.16702 -16.26857 -16.18863 -15.17095 -14.84453 -14.58758 -14.23506 -13.81448 -13.10430 -12.99899 -12.80423 -12.47731 -11.95735 -11.73169 -11.54152 -11.31854 -11.16705 -10.94816 -10.89783 -10.66954 -10.59359 -10.29145 -10.13943 -9.54009 -9.10701 -9.02815 -8.42797 -8.09920 -7.94309 -6.06152 -4.13369 1.59542 1.80741 2.32789 2.57300 3.27930 3.34835 3.38818 4.18177 4.41428 4.83324 5.15377 5.25183 5.37139 5.52681 5.59879 5.69659 5.76132 5.90771 5.94526 6.03222 6.21958 6.43148 6.62549 6.71033 6.77146 6.86101 6.91065 7.00449 7.10767 7.21987 7.44082 7.66018 7.87223 8.03157 8.31731 8.89005 9.51861 10.99526 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.006832 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.648018 B = 4097.524844 C = 4866.782510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.082 4.082 3 C -0.114 4.114 4 C -0.051 4.051 5 C -0.127 4.127 6 C -0.034 4.034 7 Cl -0.091 7.091 8 C -0.100 4.100 9 C -0.017 4.017 10 C 0.072 3.928 11 H 0.038 0.962 12 C -0.133 4.133 13 C -0.510 4.510 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.112 4.112 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.087 0.913 30 H 0.029 0.971 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 11.020 -7.490 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.083 4.083 3 C -0.170 4.170 4 C -0.051 4.051 5 C -0.145 4.145 6 C -0.060 4.060 7 Cl -0.063 7.063 8 C -0.118 4.118 9 C -0.017 4.017 10 C 0.053 3.947 11 H 0.056 0.944 12 C -0.191 4.191 13 C -0.548 4.548 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.130 4.130 22 H 0.119 0.881 23 H 0.120 0.880 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.151 0.849 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.983 10.884 -7.435 13.217 hybrid contribution -0.314 -1.037 -0.434 1.167 sum 0.670 9.847 -7.869 12.623 Atomic orbital electron populations 1.24121 0.94678 1.01978 1.01405 1.20461 0.94425 0.93111 1.00254 1.20820 1.00371 0.93877 1.01957 1.18751 0.97856 0.94159 0.94338 1.20746 0.98948 0.95940 0.98914 1.20817 0.98338 0.96762 0.90065 1.98321 1.69764 1.93104 1.45091 1.21067 0.99863 0.99222 0.91680 1.20608 0.91209 0.93555 0.96377 1.17931 0.94878 0.92530 0.89330 0.94384 1.21806 0.96424 0.98722 1.02157 1.21094 1.42400 0.96367 0.94960 0.92376 1.24942 0.95308 0.98701 0.94851 1.69877 1.47974 1.32979 1.01905 0.86573 0.79210 0.83807 0.78366 1.20571 1.21169 1.19849 1.21343 1.00227 0.93790 0.97674 0.88139 0.88043 0.91529 0.91729 0.91621 0.86076 0.84900 0.89431 0.95171 0.97135 0.92857 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 13.95 28.83 0.40 -1.91 16 2 C -0.08 -1.11 5.44 -102.61 -0.56 -1.67 16 3 C -0.11 -1.23 10.02 36.01 0.36 -0.87 16 4 C -0.05 -0.83 5.30 -105.02 -0.56 -1.39 16 5 C -0.13 -2.05 9.55 -39.16 -0.37 -2.43 16 6 C -0.03 -0.59 6.31 -39.55 -0.25 -0.84 16 7 Cl -0.09 -1.43 28.95 -51.86 -1.50 -2.93 16 8 C -0.10 -1.98 8.48 -39.47 -0.33 -2.32 16 9 C -0.02 -0.36 4.73 -104.69 -0.50 -0.86 16 10 C 0.07 1.74 2.48 -92.92 -0.23 1.51 16 11 H 0.04 0.98 7.87 -51.93 -0.41 0.58 16 12 C -0.13 -3.14 8.78 37.16 0.33 -2.81 16 13 C -0.51 -13.59 8.24 -34.44 -0.28 -13.87 16 14 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -24.70 11.32 55.43 0.63 -24.08 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.11 -2.10 9.33 -39.19 -0.37 -2.47 16 22 H 0.10 1.01 8.05 -52.48 -0.42 0.59 16 23 H 0.10 1.35 8.05 -52.49 -0.42 0.93 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.59 8.07 -51.93 -0.42 0.18 16 26 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.13 2.72 7.56 -52.49 -0.40 2.33 16 29 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 30 H 0.03 0.68 7.38 -51.93 -0.38 0.29 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.12 2.21 7.94 -52.49 -0.42 1.79 16 LS Contribution 298.39 15.07 4.50 4.50 Total: -1.00 -27.00 298.39 -8.26 -35.26 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.41 Total: -0.42 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.45 Total: -28.30 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.63 Total: -24.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.00 -8.26 -35.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260463048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.203 kcal (2) G-P(sol) polarization free energy of solvation -27.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds