Wall clock time and date at job start Mon Mar 30 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99639 * 2 1 4 4 H 1.48497 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46826 * 299.99726 * 3 2 1 6 6 H 1.48488 * 109.47079 * 60.00121 * 3 2 1 7 7 C 1.37875 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99552 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00164 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.43541 * 57.45686 * 9 7 2 11 11 C 1.54271 * 110.59954 * 294.83918 * 9 7 2 12 12 C 1.53875 * 106.59950 * 217.65666 * 11 9 7 13 13 C 1.54462 * 106.68383 * 0.15902 * 12 11 9 14 14 H 1.09001 * 110.40673 * 264.75673 * 13 12 11 15 15 O 1.42901 * 110.65857 * 142.05535 * 13 12 11 16 16 C 1.35942 * 117.00222 * 89.12888 * 15 13 12 17 17 C 1.38707 * 120.02950 * 174.12712 * 16 15 13 18 18 C 1.38156 * 119.96946 * 179.74148 * 17 16 15 19 19 C 1.38452 * 120.02667 * 0.53317 * 18 17 16 20 20 F 1.35104 * 119.96889 * 179.74070 * 19 18 17 21 21 C 1.38451 * 120.06221 * 359.71995 * 19 18 17 22 22 C 1.38148 * 120.03119 * 0.02716 * 21 19 18 23 23 C 1.54885 * 104.10388 * 23.34261 * 13 12 11 24 24 H 0.97001 * 120.00331 * 0.02562 * 1 2 3 25 25 H 1.08996 * 110.02953 * 336.94513 * 11 9 7 26 26 H 1.09002 * 110.02767 * 98.32433 * 11 9 7 27 27 H 1.08994 * 110.02852 * 119.28498 * 12 11 9 28 28 H 1.08999 * 110.02694 * 240.71509 * 12 11 9 29 29 H 1.08005 * 120.01878 * 359.97339 * 17 16 15 30 30 H 1.07997 * 119.98375 * 180.27203 * 18 17 16 31 31 H 1.08000 * 119.98574 * 179.97438 * 21 19 18 32 32 H 1.07996 * 120.01745 * 180.02562 * 22 21 19 33 33 H 1.09000 * 110.75749 * 203.89278 * 23 13 12 34 34 H 1.09000 * 110.75639 * 80.70449 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5847 -2.5538 -0.8613 11 6 0.4549 -2.6662 1.3102 12 6 0.5391 -4.1552 1.6890 13 6 1.3878 -4.8432 0.5970 14 1 0.7436 -5.2790 -0.1666 15 8 2.2326 -5.8429 1.1704 16 6 1.7194 -7.0971 1.2781 17 6 2.5232 -8.1413 1.7112 18 6 1.9989 -9.4144 1.8253 19 6 0.6747 -9.6503 1.4970 20 9 0.1646 -10.8968 1.6040 21 6 -0.1273 -8.6100 1.0596 22 6 0.3930 -7.3350 0.9496 23 6 2.2366 -3.6941 -0.0012 24 1 -0.4851 0.8400 -0.0004 25 1 0.8979 -2.0552 2.0966 26 1 -0.5848 -2.3779 1.1548 27 1 1.0230 -4.2668 2.6592 28 1 -0.4599 -4.5903 1.7172 29 1 3.5575 -7.9585 1.9627 30 1 2.6234 -10.2267 2.1667 31 1 -1.1600 -8.7955 0.8034 32 1 -0.2330 -6.5236 0.6087 33 1 2.5515 -3.9345 -1.0166 34 1 3.1001 -3.4829 0.6296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:11 Heat of formation + Delta-G solvation = -88.568945 kcal Electronic energy + Delta-G solvation = -17606.181097 eV Core-core repulsion = 14610.451483 eV Total energy + Delta-G solvation = -2995.729614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.79676 -41.26793 -38.99942 -37.23662 -34.34816 -32.22774 -30.51952 -30.04682 -28.74044 -26.03352 -24.10602 -23.34835 -21.27383 -21.08975 -19.42773 -18.54114 -18.03692 -17.43277 -16.79057 -16.53429 -16.46065 -15.73454 -15.46327 -15.26583 -14.64696 -14.41733 -14.14662 -13.98195 -13.68865 -13.42343 -13.05933 -12.83382 -12.77321 -12.39424 -12.20052 -11.92617 -11.61924 -11.52523 -11.33128 -11.06767 -10.78370 -10.49598 -10.16250 -9.06155 -8.13591 -6.22514 0.18456 0.22657 1.40870 1.43465 1.54329 2.22390 2.45134 2.59360 3.18179 3.33821 3.68371 3.79360 3.84940 3.89183 4.10554 4.17804 4.32605 4.46586 4.64054 4.78136 4.83795 4.92627 4.95380 5.03279 5.08713 5.15010 5.16064 5.28082 5.36116 5.39955 5.64792 5.76231 5.87699 5.94707 6.35628 6.48350 6.87676 7.45172 8.95975 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.064795 B = 0.004045 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.026221 B = 6921.168118 C = 7178.992048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.041 3.959 10 H 0.010 0.990 11 C -0.088 4.088 12 C -0.136 4.136 13 C 0.087 3.913 14 H 0.088 0.912 15 O -0.315 6.315 16 C 0.109 3.891 17 C -0.133 4.133 18 C -0.107 4.107 19 C 0.038 3.962 20 F -0.148 7.148 21 C -0.112 4.112 22 C -0.189 4.189 23 C -0.101 4.101 24 H 0.261 0.739 25 H 0.032 0.968 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.065 0.935 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -16.785 3.009 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.023 3.977 10 H 0.029 0.971 11 C -0.126 4.126 12 C -0.173 4.173 13 C 0.031 3.969 14 H 0.106 0.894 15 O -0.229 6.229 16 C 0.064 3.936 17 C -0.152 4.152 18 C -0.125 4.125 19 C 0.019 3.981 20 F -0.127 7.127 21 C -0.130 4.130 22 C -0.208 4.208 23 C -0.139 4.139 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.084 0.916 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.530 -16.628 3.069 16.978 hybrid contribution -0.187 1.086 -0.086 1.105 sum 1.344 -15.542 2.982 15.883 Atomic orbital electron populations 1.70078 1.07165 1.27224 1.51334 1.25728 0.95656 1.02344 0.94797 0.85590 0.79187 0.79860 0.77558 1.19108 1.20632 1.20747 1.21519 0.93068 0.91799 1.50617 0.92747 1.19395 0.92826 0.91993 0.93527 0.97143 1.21846 0.99344 0.92871 0.98564 1.22684 0.99699 0.96345 0.98600 1.23457 0.92076 0.86508 0.94845 0.89420 1.86156 1.43221 1.16067 1.77424 1.19459 0.92709 0.85280 0.96193 1.20537 1.01175 0.89918 1.03537 1.21175 0.93668 0.97812 0.99875 1.17748 0.93631 0.79926 1.06824 1.91466 1.87584 1.39191 1.94450 1.21131 1.01253 0.91202 0.99462 1.21352 0.95038 0.98434 1.05970 1.22533 0.98527 0.93170 0.99634 0.93041 0.94919 0.94329 0.91531 0.90669 0.82860 0.81693 0.82878 0.83890 0.91617 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 12.63 21.45 0.27 -52.28 16 2 C 0.01 0.75 5.35 84.65 0.45 1.20 16 3 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.53 -28.86 8.37 25.60 0.21 -28.65 16 8 H 0.05 2.91 7.77 -2.91 -0.02 2.89 16 9 C 0.04 2.00 2.72 -10.46 -0.03 1.97 16 10 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 11 C -0.09 -3.99 5.61 31.32 0.18 -3.81 16 12 C -0.14 -4.79 6.29 31.39 0.20 -4.59 16 13 C 0.09 2.92 2.69 31.74 0.09 3.01 16 14 H 0.09 2.68 6.29 -2.39 -0.02 2.67 16 15 O -0.31 -10.03 9.86 -92.89 -0.92 -10.95 16 16 C 0.11 2.95 6.66 22.49 0.15 3.10 16 17 C -0.13 -2.96 9.98 22.36 0.22 -2.74 16 18 C -0.11 -2.08 10.02 22.30 0.22 -1.86 16 19 C 0.04 0.83 7.30 22.37 0.16 0.99 16 20 F -0.15 -3.32 17.27 44.97 0.78 -2.55 16 21 C -0.11 -2.43 10.02 22.30 0.22 -2.20 16 22 C -0.19 -4.65 8.87 22.36 0.20 -4.46 16 23 C -0.10 -4.03 5.99 31.88 0.19 -3.84 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.03 1.59 7.83 -2.39 -0.02 1.57 16 26 H 0.04 1.86 8.06 -2.39 -0.02 1.84 16 27 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 28 H 0.07 2.32 7.70 -2.39 -0.02 2.30 16 29 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.14 3.41 5.52 -2.91 -0.02 3.39 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 Total: -1.00 -59.22 288.54 5.72 -53.50 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.09 Total: 8.98 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 2.47 Total: -41.88 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.27 Total: -52.28 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.92 Total: -10.95 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -59.22 5.72 -53.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.073 kcal (2) G-P(sol) polarization free energy of solvation -59.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds