Wall clock time and date at job start Mon Mar 30 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48502 * 109.47093 * 269.99858 * 3 2 1 5 5 H 1.48504 * 109.47185 * 29.99884 * 3 2 1 6 6 H 1.48494 * 109.47296 * 150.00181 * 3 2 1 7 7 C 1.37881 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00166 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.05565 * 301.41902 * 9 7 2 11 11 C 1.54264 * 110.03096 * 62.83448 * 9 7 2 12 12 C 1.55237 * 104.23113 * 142.89853 * 11 9 7 13 13 C 1.54898 * 102.58648 * 322.08144 * 12 11 9 14 14 H 1.09004 * 110.48568 * 279.19019 * 13 12 11 15 15 O 1.42894 * 110.48524 * 156.68007 * 13 12 11 16 16 C 1.35945 * 117.00091 * 86.59525 * 15 13 12 17 17 C 1.38704 * 120.02961 * 174.21812 * 16 15 13 18 18 C 1.38152 * 119.97025 * 179.74280 * 17 16 15 19 19 C 1.38455 * 120.02804 * 0.52746 * 18 17 16 20 20 F 1.35102 * 119.96685 * 179.72321 * 19 18 17 21 21 C 1.38450 * 120.05956 * 359.74540 * 19 18 17 22 22 C 1.38152 * 120.03073 * 359.97438 * 21 19 18 23 23 C 1.53879 * 110.03073 * 180.02562 * 9 7 2 24 24 H 0.97001 * 119.99983 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.48475 * 261.56823 * 11 9 7 26 26 H 1.08996 * 110.48810 * 24.21283 * 11 9 7 27 27 H 1.09007 * 110.90026 * 203.79515 * 12 11 9 28 28 H 1.08995 * 110.76972 * 80.30894 * 12 11 9 29 29 H 1.08006 * 120.01827 * 359.97438 * 17 16 15 30 30 H 1.08001 * 119.98847 * 180.29944 * 18 17 16 31 31 H 1.08003 * 119.98356 * 179.97438 * 21 19 18 32 32 H 1.07995 * 120.01403 * 180.02562 * 22 21 19 33 33 H 1.08994 * 110.03292 * 121.43139 * 23 9 7 34 34 H 1.09000 * 110.02950 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6022 -2.5562 0.8735 11 6 0.4132 -2.6256 -1.2897 12 6 0.5040 -4.1310 -1.6577 13 6 1.9677 -4.4805 -1.2906 14 1 2.6455 -4.1670 -2.0847 15 8 2.1008 -5.8819 -1.0454 16 6 2.3383 -6.6771 -2.1222 17 6 2.5972 -8.0280 -1.9438 18 6 2.8331 -8.8360 -3.0393 19 6 2.8219 -8.2957 -4.3140 20 9 3.0583 -9.0859 -5.3840 21 6 2.5692 -6.9463 -4.4931 22 6 2.3273 -6.1371 -3.3997 23 6 2.2394 -3.6785 -0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6220 -2.3412 -1.1013 26 1 0.8398 -2.0126 -2.0836 27 1 0.3262 -4.2824 -2.7225 28 1 -0.1944 -4.7176 -1.0610 29 1 2.6106 -8.4489 -0.9493 30 1 3.0299 -9.8889 -2.9011 31 1 2.5613 -6.5260 -5.4879 32 1 2.1298 -5.0847 -3.5397 33 1 2.0700 -4.3077 0.8732 34 1 3.2641 -3.3068 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:15 Heat of formation + Delta-G solvation = -74.740426 kcal Electronic energy + Delta-G solvation = -17671.446774 eV Core-core repulsion = 14676.316809 eV Total energy + Delta-G solvation = -2995.129964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.82468 -40.09569 -37.71485 -35.77351 -32.36862 -31.24205 -29.40997 -28.32217 -27.09769 -24.24000 -22.97086 -22.24975 -20.02398 -19.08129 -18.30247 -17.29791 -16.49606 -16.44452 -15.59402 -14.93498 -14.83859 -14.48129 -14.28478 -13.79290 -13.43317 -13.22817 -12.72257 -12.50371 -12.31354 -12.06701 -11.55369 -11.20287 -10.93798 -10.86091 -10.62663 -10.28403 -10.16861 -9.87907 -9.68763 -9.37591 -9.21639 -8.81900 -8.42778 -7.98132 -6.06500 -4.09919 1.12989 1.23754 3.27091 3.34578 3.37264 3.46115 3.58659 4.29748 4.39728 4.68524 4.75546 5.08604 5.20444 5.26796 5.37137 5.40670 5.53624 5.65437 5.83318 6.09084 6.09985 6.13869 6.26431 6.38815 6.45191 6.48604 6.62642 6.76435 6.87601 7.08637 7.22437 7.62633 7.68166 7.78509 7.94031 8.37177 8.92885 9.54557 11.02952 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.046113 B = 0.004269 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.055436 B = 6556.829518 C = 6700.257283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.047 3.953 10 H 0.034 0.966 11 C -0.091 4.091 12 C -0.152 4.152 13 C 0.077 3.923 14 H 0.073 0.927 15 O -0.306 6.306 16 C 0.137 3.863 17 C -0.134 4.134 18 C -0.114 4.114 19 C 0.044 3.956 20 F -0.147 7.147 21 C -0.111 4.111 22 C -0.183 4.183 23 C -0.107 4.107 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.057 0.943 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -13.493 -6.260 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.028 3.972 10 H 0.052 0.948 11 C -0.129 4.129 12 C -0.190 4.190 13 C 0.022 3.978 14 H 0.091 0.909 15 O -0.220 6.220 16 C 0.090 3.910 17 C -0.153 4.153 18 C -0.133 4.133 19 C 0.024 3.976 20 F -0.126 7.126 21 C -0.130 4.130 22 C -0.202 4.202 23 C -0.145 4.145 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.076 0.924 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.467 -13.421 -6.072 15.133 hybrid contribution 0.437 0.979 -0.470 1.170 sum 3.904 -12.442 -6.542 14.589 Atomic orbital electron populations 1.69964 1.05894 1.26576 1.50241 1.24986 0.94850 0.99075 0.95032 0.86631 0.79928 0.83583 0.78097 1.20712 1.21238 1.19899 1.21271 0.92727 0.90393 1.51149 0.92521 1.19228 0.92322 0.91219 0.94428 0.94823 1.22313 1.01358 0.89703 0.99523 1.23240 0.95191 1.00782 0.99769 1.23745 0.97650 0.75861 1.00546 0.90866 1.86183 1.84734 1.20253 1.30809 1.19152 0.93784 0.91158 0.86884 1.20304 1.04515 0.90937 0.99555 1.20888 1.01339 1.00601 0.90489 1.17537 1.07458 0.89016 0.83550 1.91461 1.92606 1.73929 1.54583 1.20939 1.00207 0.91803 1.00028 1.21332 1.05984 1.01444 0.91423 1.22417 1.01703 0.96537 0.93805 0.92995 0.91883 0.92571 0.92826 0.91450 0.84343 0.84476 0.84747 0.83938 0.92443 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 12.43 55.43 0.69 -24.15 16 2 C 0.06 1.68 5.33 -17.82 -0.09 1.59 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.66 8.36 -34.44 -0.29 -13.94 16 8 H 0.06 1.47 7.33 -52.48 -0.38 1.09 16 9 C 0.05 1.11 2.82 -90.65 -0.26 0.85 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.09 -2.01 5.44 -24.88 -0.14 -2.14 16 12 C -0.15 -2.75 6.30 -24.55 -0.15 -2.90 16 13 C 0.08 1.36 2.69 -25.04 -0.07 1.30 16 14 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 15 O -0.31 -5.13 9.86 -19.57 -0.19 -5.33 16 16 C 0.14 2.01 6.64 -39.24 -0.26 1.75 16 17 C -0.13 -1.68 9.98 -39.44 -0.39 -2.07 16 18 C -0.11 -1.30 10.02 -39.53 -0.40 -1.70 16 19 C 0.04 0.54 7.30 -39.42 -0.29 0.26 16 20 F -0.15 -1.86 17.27 2.25 0.04 -1.83 16 21 C -0.11 -1.37 10.02 -39.53 -0.40 -1.77 16 22 C -0.18 -2.50 8.72 -39.44 -0.34 -2.84 16 23 C -0.11 -2.15 6.21 -25.58 -0.16 -2.31 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.06 1.49 7.97 -51.93 -0.41 1.08 16 26 H 0.06 1.30 7.85 -51.93 -0.41 0.89 16 27 H 0.05 0.87 7.33 -51.93 -0.38 0.49 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.14 1.91 5.34 -52.49 -0.28 1.63 16 33 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.06 1.31 7.37 -51.93 -0.38 0.93 16 LS Contribution 286.69 15.07 4.32 4.32 Total: -1.00 -27.44 286.69 -7.65 -35.09 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.25 Total: 0.11 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -3.23 Total: -23.94 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.69 Total: -24.15 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.33 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.44 -7.65 -35.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.654 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds