Wall clock time and date at job start Mon Mar 30 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48502 * 109.47093 * 269.99858 * 3 2 1 5 5 H 1.48504 * 109.47185 * 29.99884 * 3 2 1 6 6 H 1.48494 * 109.47296 * 150.00181 * 3 2 1 7 7 C 1.37881 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00166 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.05565 * 301.41902 * 9 7 2 11 11 C 1.54264 * 110.03096 * 62.83448 * 9 7 2 12 12 C 1.55237 * 104.23113 * 142.89853 * 11 9 7 13 13 C 1.54898 * 102.58648 * 322.08144 * 12 11 9 14 14 H 1.09004 * 110.48568 * 279.19019 * 13 12 11 15 15 O 1.42894 * 110.48524 * 156.68007 * 13 12 11 16 16 C 1.35945 * 117.00091 * 86.59525 * 15 13 12 17 17 C 1.38704 * 120.02961 * 174.21812 * 16 15 13 18 18 C 1.38152 * 119.97025 * 179.74280 * 17 16 15 19 19 C 1.38455 * 120.02804 * 0.52746 * 18 17 16 20 20 F 1.35102 * 119.96685 * 179.72321 * 19 18 17 21 21 C 1.38450 * 120.05956 * 359.74540 * 19 18 17 22 22 C 1.38152 * 120.03073 * 359.97438 * 21 19 18 23 23 C 1.53879 * 110.03073 * 180.02562 * 9 7 2 24 24 H 0.97001 * 119.99983 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.48475 * 261.56823 * 11 9 7 26 26 H 1.08996 * 110.48810 * 24.21283 * 11 9 7 27 27 H 1.09007 * 110.90026 * 203.79515 * 12 11 9 28 28 H 1.08995 * 110.76972 * 80.30894 * 12 11 9 29 29 H 1.08006 * 120.01827 * 359.97438 * 17 16 15 30 30 H 1.08001 * 119.98847 * 180.29944 * 18 17 16 31 31 H 1.08003 * 119.98356 * 179.97438 * 21 19 18 32 32 H 1.07995 * 120.01403 * 180.02562 * 22 21 19 33 33 H 1.08994 * 110.03292 * 121.43139 * 23 9 7 34 34 H 1.09000 * 110.02950 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6022 -2.5562 0.8735 11 6 0.4132 -2.6256 -1.2897 12 6 0.5040 -4.1310 -1.6577 13 6 1.9677 -4.4805 -1.2906 14 1 2.6455 -4.1670 -2.0847 15 8 2.1008 -5.8819 -1.0454 16 6 2.3383 -6.6771 -2.1222 17 6 2.5972 -8.0280 -1.9438 18 6 2.8331 -8.8360 -3.0393 19 6 2.8219 -8.2957 -4.3140 20 9 3.0583 -9.0859 -5.3840 21 6 2.5692 -6.9463 -4.4931 22 6 2.3273 -6.1371 -3.3997 23 6 2.2394 -3.6785 -0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6220 -2.3412 -1.1013 26 1 0.8398 -2.0126 -2.0836 27 1 0.3262 -4.2824 -2.7225 28 1 -0.1944 -4.7176 -1.0610 29 1 2.6106 -8.4489 -0.9493 30 1 3.0299 -9.8889 -2.9011 31 1 2.5613 -6.5260 -5.4879 32 1 2.1298 -5.0847 -3.5397 33 1 2.0700 -4.3077 0.8732 34 1 3.2641 -3.3068 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:15 Heat of formation + Delta-G solvation = -87.883664 kcal Electronic energy + Delta-G solvation = -17672.016707 eV Core-core repulsion = 14676.316809 eV Total energy + Delta-G solvation = -2995.699898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.79549 -41.27168 -39.00513 -37.24667 -34.31400 -32.22473 -30.52411 -30.06026 -28.66504 -26.04234 -24.07534 -23.34289 -21.49588 -20.82125 -19.45184 -18.50768 -18.28986 -17.52996 -16.63011 -16.53332 -16.11816 -15.96736 -15.50262 -15.13237 -14.63957 -14.42101 -14.15736 -13.93500 -13.72339 -13.49475 -13.04087 -12.76533 -12.69685 -12.45926 -12.15807 -11.91528 -11.60676 -11.48412 -11.34206 -11.16882 -10.78368 -10.46503 -10.15775 -9.05677 -8.12062 -6.21831 0.18840 0.22992 1.42379 1.43963 1.53430 2.23113 2.44434 2.59815 3.19112 3.34143 3.70488 3.80497 3.84899 3.88205 4.13509 4.18872 4.33025 4.48455 4.67213 4.76615 4.85187 4.90031 4.93520 5.03461 5.11901 5.15209 5.16259 5.28810 5.35459 5.43206 5.65837 5.77190 5.88003 5.94427 6.35127 6.47990 6.89077 7.45878 8.96868 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.046113 B = 0.004269 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.055436 B = 6556.829518 C = 6700.257283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.037 3.963 10 H 0.000 1.000 11 C -0.082 4.082 12 C -0.138 4.138 13 C 0.091 3.909 14 H 0.084 0.916 15 O -0.316 6.316 16 C 0.110 3.890 17 C -0.133 4.133 18 C -0.107 4.107 19 C 0.038 3.962 20 F -0.148 7.148 21 C -0.112 4.112 22 C -0.190 4.190 23 C -0.102 4.102 24 H 0.260 0.740 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.061 0.939 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 -14.763 -7.263 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.019 3.981 10 H 0.019 0.981 11 C -0.121 4.121 12 C -0.176 4.176 13 C 0.036 3.964 14 H 0.102 0.898 15 O -0.230 6.230 16 C 0.065 3.935 17 C -0.151 4.151 18 C -0.125 4.125 19 C 0.019 3.981 20 F -0.127 7.127 21 C -0.131 4.131 22 C -0.208 4.208 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.172 0.828 30 H 0.184 0.816 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.568 -14.711 -7.083 16.954 hybrid contribution 0.106 1.275 -0.176 1.291 sum 4.674 -13.436 -7.259 15.971 Atomic orbital electron populations 1.70090 1.07244 1.27241 1.51247 1.25744 0.95618 1.02367 0.94850 0.85645 0.78769 0.79538 0.78261 1.20046 1.21202 1.19238 1.21645 0.92986 0.91712 1.50689 0.92491 1.19212 0.92855 0.92155 0.93886 0.98150 1.22060 0.99231 0.92575 0.98207 1.23097 0.95851 0.97368 1.01258 1.23382 0.97223 0.76759 0.99082 0.89804 1.86130 1.85555 1.19406 1.31922 1.19439 0.95630 0.91791 0.86683 1.20538 1.03666 0.90145 1.00768 1.21177 0.99866 1.01873 0.89605 1.17745 1.07255 0.89157 0.83963 1.91464 1.92593 1.73921 1.54715 1.21129 0.99567 0.91833 1.00581 1.21363 1.06373 1.01632 0.91457 1.22222 1.00404 0.95663 0.95668 0.93085 0.94346 0.94007 0.90416 0.91362 0.82771 0.81647 0.82965 0.84002 0.92033 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.58 12.43 21.45 0.27 -52.31 16 2 C 0.01 0.72 5.33 84.66 0.45 1.17 16 3 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.53 -28.52 8.36 25.60 0.21 -28.31 16 8 H 0.06 2.97 7.33 -2.91 -0.02 2.95 16 9 C 0.04 1.83 2.82 -10.82 -0.03 1.80 16 10 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 11 C -0.08 -3.72 5.44 31.79 0.17 -3.54 16 12 C -0.14 -4.88 6.30 32.01 0.20 -4.68 16 13 C 0.09 3.12 2.69 31.69 0.09 3.21 16 14 H 0.08 2.70 6.43 -2.38 -0.02 2.68 16 15 O -0.32 -10.10 9.86 -92.93 -0.92 -11.01 16 16 C 0.11 3.00 6.64 22.49 0.15 3.15 16 17 C -0.13 -2.96 9.98 22.36 0.22 -2.73 16 18 C -0.11 -2.09 10.02 22.30 0.22 -1.87 16 19 C 0.04 0.84 7.30 22.37 0.16 1.00 16 20 F -0.15 -3.36 17.27 44.97 0.78 -2.58 16 21 C -0.11 -2.50 10.02 22.30 0.22 -2.27 16 22 C -0.19 -4.77 8.72 22.36 0.19 -4.58 16 23 C -0.10 -4.09 6.21 31.34 0.19 -3.90 16 24 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.04 1.88 7.97 -2.39 -0.02 1.86 16 26 H 0.04 1.97 7.85 -2.39 -0.02 1.95 16 27 H 0.08 2.38 7.33 -2.38 -0.02 2.36 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 30 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.14 3.53 5.34 -2.91 -0.02 3.51 16 33 H 0.06 2.38 8.07 -2.39 -0.02 2.36 16 34 H 0.06 2.58 7.37 -2.39 -0.02 2.56 16 Total: -1.00 -58.80 286.69 5.72 -53.09 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.10 Total: 9.60 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 2.47 Total: -41.55 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.27 Total: -52.31 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.92 Total: -11.01 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -58.80 5.72 -53.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.797 kcal (2) G-P(sol) polarization free energy of solvation -58.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds