Wall clock time and date at job start Mon Mar 30 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00412 * 2 1 4 4 H 1.48507 * 109.46964 * 89.99989 * 3 2 1 5 5 H 1.48498 * 109.47197 * 209.99998 * 3 2 1 6 6 H 1.48496 * 109.46760 * 330.00207 * 3 2 1 7 7 C 1.37884 * 119.99301 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00264 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99182 * 179.97438 * 7 2 1 10 10 H 1.08990 * 110.43671 * 302.54589 * 9 7 2 11 11 C 1.54261 * 110.48311 * 65.23221 * 9 7 2 12 12 C 1.53883 * 106.59837 * 142.28322 * 11 9 7 13 13 C 1.54261 * 106.59692 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.60275 * 95.12255 * 13 12 11 15 15 O 1.42894 * 110.48738 * 217.70904 * 13 12 11 16 16 C 1.35947 * 117.00662 * 270.96960 * 15 13 12 17 17 C 1.38711 * 120.02431 * 5.18672 * 16 15 13 18 18 C 1.38147 * 119.96569 * 179.74352 * 17 16 15 19 19 C 1.38456 * 120.03210 * 0.53358 * 18 17 16 20 20 F 1.35104 * 119.96882 * 179.74108 * 19 18 17 21 21 C 1.38446 * 120.05978 * 359.72165 * 19 18 17 22 22 C 1.38149 * 120.03191 * 0.02562 * 21 19 18 23 23 C 1.54887 * 110.48145 * 180.02562 * 9 7 2 24 24 H 0.97003 * 119.99664 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.03582 * 261.56456 * 11 9 7 26 26 H 1.09003 * 110.03980 * 23.00224 * 11 9 7 27 27 H 1.08996 * 110.03425 * 240.71351 * 12 11 9 28 28 H 1.08998 * 110.03402 * 119.28430 * 12 11 9 29 29 H 1.08002 * 120.01696 * 359.97438 * 17 16 15 30 30 H 1.08001 * 119.98428 * 180.27415 * 18 17 16 31 31 H 1.07998 * 119.98731 * 180.02562 * 21 19 18 32 32 H 1.08006 * 120.01816 * 179.97438 * 22 21 19 33 33 H 1.09006 * 110.75933 * 321.69916 * 23 9 7 34 34 H 1.09000 * 110.75816 * 84.88274 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8917 -0.6453 -0.8615 11 6 4.0518 -0.5879 1.3115 12 6 5.2986 -1.4053 1.6928 13 6 5.4719 -2.4801 0.5999 14 1 6.1711 -2.1408 -0.1644 15 8 5.9190 -3.7098 1.1743 16 6 7.2623 -3.8874 1.2842 17 6 8.1284 -2.8572 0.9486 18 6 9.4931 -3.0373 1.0658 19 6 9.9968 -4.2490 1.5075 20 9 11.3318 -4.4254 1.6166 21 6 9.1336 -5.2798 1.8377 22 6 7.7683 -5.1008 1.7264 23 6 4.0535 -2.6451 0.0001 24 1 -0.4850 0.8401 0.0004 25 1 4.3231 0.4563 1.1562 26 1 3.2998 -0.6659 2.0967 27 1 5.1516 -1.8800 2.6628 28 1 6.1749 -0.7577 1.7225 29 1 7.7360 -1.9136 0.5995 30 1 10.1675 -2.2338 0.8089 31 1 9.5278 -6.2244 2.1824 32 1 7.0951 -5.9053 1.9837 33 1 3.4396 -3.2868 0.6322 34 1 4.1031 -3.0391 -1.0150 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527749.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:17 Heat of formation + Delta-G solvation = -68.697096 kcal Electronic energy + Delta-G solvation = -17688.256410 eV Core-core repulsion = 14693.388504 eV Total energy + Delta-G solvation = -2994.867906 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.90164 -40.22810 -37.90101 -35.99674 -32.41152 -31.35239 -29.58634 -28.69578 -27.66254 -24.14510 -22.98545 -22.35374 -20.15271 -19.41439 -18.31443 -17.44100 -16.78460 -16.30820 -15.71675 -15.48739 -14.92294 -14.55601 -14.09730 -14.04445 -13.71969 -13.21643 -12.93548 -12.69913 -12.54468 -12.25970 -11.87395 -11.61736 -11.12166 -10.79587 -10.54096 -10.37521 -10.19026 -10.06819 -9.83375 -9.52176 -9.31175 -9.06359 -8.60408 -8.08673 -6.11762 -4.11432 1.03744 1.14427 3.24607 3.31539 3.33295 3.35171 3.48898 4.21162 4.37208 4.58327 4.65996 4.94007 5.03505 5.11702 5.23243 5.28146 5.35975 5.45809 5.73140 5.78512 6.00424 6.02206 6.10231 6.18101 6.22198 6.26256 6.38744 6.56561 6.59643 6.75079 6.80630 7.03960 7.39732 7.56572 7.71398 8.47451 8.92188 9.50155 11.01405 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.052484 B = 0.004476 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.371238 B = 6254.390887 C = 6614.012840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.292 1.292 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.014 3.986 10 H 0.035 0.965 11 C -0.129 4.129 12 C -0.142 4.142 13 C 0.072 3.928 14 H 0.074 0.926 15 O -0.301 6.301 16 C 0.135 3.865 17 C -0.185 4.185 18 C -0.111 4.111 19 C 0.045 3.955 20 F -0.146 7.146 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.096 4.096 24 H 0.264 0.736 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.681 -6.312 2.788 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.219 1.219 7 C -0.549 4.549 8 H 0.094 0.906 9 C -0.005 4.005 10 H 0.053 0.947 11 C -0.167 4.167 12 C -0.180 4.180 13 C 0.016 3.984 14 H 0.092 0.908 15 O -0.214 6.214 16 C 0.088 3.912 17 C -0.204 4.204 18 C -0.130 4.130 19 C 0.026 3.974 20 F -0.125 7.125 21 C -0.132 4.132 22 C -0.151 4.151 23 C -0.133 4.133 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.384 -6.315 2.845 18.713 hybrid contribution 0.756 1.222 0.037 1.437 sum 18.140 -5.093 2.882 19.060 Atomic orbital electron populations 1.69901 1.06286 1.26972 1.50670 1.24990 0.94645 0.98976 0.94401 0.86922 0.80127 0.83813 0.78514 1.20245 1.18978 1.21891 1.20978 0.88342 0.94586 1.50983 0.90627 1.19933 0.97009 0.90697 0.92874 0.94677 1.22607 0.95341 0.97368 1.01417 1.22666 0.99295 0.97129 0.98868 1.23757 0.97848 0.81978 0.94784 0.90817 1.86220 1.17719 1.40605 1.76891 1.19172 0.83932 0.93605 0.94487 1.21276 0.92911 1.00283 1.05887 1.20927 0.95693 0.96336 1.00039 1.17542 0.77302 0.95768 1.06786 1.91468 1.30664 1.95945 1.94423 1.20909 0.92522 0.98798 1.00977 1.20322 0.94394 0.96350 1.03990 1.22535 0.90884 1.00335 0.99585 0.92612 0.93688 0.90857 0.91107 0.92601 0.84148 0.84745 0.84363 0.84190 0.90421 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.03 24.88 -169.99 -4.23 16.80 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.26 -6.01 6.41 56.52 0.36 -5.65 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.51 -13.84 8.94 -34.43 -0.31 -14.15 16 8 H 0.08 2.22 8.01 -52.49 -0.42 1.80 16 9 C 0.01 0.31 2.28 -90.11 -0.21 0.10 16 10 H 0.04 0.79 7.06 -51.93 -0.37 0.42 16 11 C -0.13 -2.61 4.88 -25.61 -0.13 -2.73 16 12 C -0.14 -2.34 6.28 -25.61 -0.16 -2.50 16 13 C 0.07 1.16 2.69 -25.07 -0.07 1.09 16 14 H 0.07 1.08 6.27 -51.93 -0.33 0.75 16 15 O -0.30 -4.74 9.85 -19.57 -0.19 -4.93 16 16 C 0.13 1.84 6.66 -39.23 -0.26 1.58 16 17 C -0.18 -2.30 8.87 -39.44 -0.35 -2.65 16 18 C -0.11 -1.26 10.02 -39.53 -0.40 -1.66 16 19 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 20 F -0.15 -1.76 17.27 2.25 0.04 -1.72 16 21 C -0.11 -1.21 10.02 -39.54 -0.40 -1.61 16 22 C -0.13 -1.55 9.98 -39.44 -0.39 -1.94 16 23 C -0.10 -1.82 6.01 -24.74 -0.15 -1.97 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.04 0.89 6.05 -51.93 -0.31 0.58 16 26 H 0.07 1.58 7.83 -51.93 -0.41 1.18 16 27 H 0.07 1.15 8.07 -51.93 -0.42 0.74 16 28 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 29 H 0.14 1.65 5.52 -52.49 -0.29 1.36 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.08 1.55 8.05 -51.93 -0.42 1.13 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 281.16 15.07 4.24 4.24 Total: -1.00 -29.00 281.16 -6.80 -35.79 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.23 Total: 0.35 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -3.20 Total: -24.28 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.77 Total: -26.24 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.19 Total: -4.93 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.23 Total: 16.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.00 -6.80 -35.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527749.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.904 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds