Wall clock time and date at job start Mon Mar 30 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47342 * 2 1 4 4 C 1.50703 * 109.47297 * 119.99379 * 2 1 3 5 5 H 1.07998 * 119.99818 * 120.00214 * 4 2 1 6 6 C 1.37880 * 120.00149 * 300.00685 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46829 * 90.00126 * 8 6 4 10 10 H 1.48499 * 109.47184 * 209.99406 * 8 6 4 11 11 H 1.48497 * 109.47470 * 329.99896 * 8 6 4 12 12 N 1.46495 * 109.47365 * 239.99807 * 2 1 3 13 13 C 1.39000 * 120.00330 * 84.99983 * 12 2 1 14 14 C 1.39150 * 119.89748 * 0.02562 * 13 12 2 15 15 C 1.37757 * 118.58829 * 180.02562 * 14 13 12 16 16 C 1.40180 * 119.55082 * 359.97438 * 15 14 13 17 17 C 1.37172 * 118.93782 * 359.97438 * 16 15 14 18 18 N 1.31706 * 119.90579 * 179.97438 * 13 12 2 19 19 C 1.52449 * 115.54627 * 180.02562 * 17 16 15 20 20 S 1.83220 * 103.53046 * 342.44420 * 19 17 16 21 21 C 1.52282 * 125.26652 * 180.02562 * 16 15 14 22 22 H 1.09002 * 109.47321 * 300.00120 * 1 2 3 23 23 H 1.08996 * 109.47327 * 60.00462 * 1 2 3 24 24 H 1.09006 * 109.47342 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00177 * 180.02562 * 7 6 4 26 26 H 0.96999 * 119.99978 * 264.99424 * 12 2 1 27 27 H 1.07993 * 120.70982 * 359.97438 * 14 13 12 28 28 H 1.08003 * 120.22413 * 180.02562 * 15 14 13 29 29 H 1.09000 * 110.61057 * 223.93428 * 19 17 16 30 30 H 1.08999 * 110.61225 * 100.95762 * 19 17 16 31 31 H 1.09004 * 110.61973 * 78.98810 * 21 16 15 32 32 H 1.08997 * 110.62650 * 315.97544 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5883 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3213 -1.1200 4.0080 9 1 3.6296 -0.5454 4.4124 10 1 1.3431 -0.9489 5.1121 11 1 2.4859 -2.5659 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 2.1511 0.0027 -2.3935 14 6 1.8200 1.3529 -2.4536 15 6 1.9615 2.0135 -3.6541 16 6 2.4316 1.3163 -4.7757 17 6 2.7413 -0.0139 -4.6485 18 7 2.5908 -0.6200 -3.4675 19 6 3.2457 -0.6956 -5.9154 20 16 2.7266 0.4453 -7.2517 21 6 2.6374 1.9151 -6.1606 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7092 1.1620 3.4843 26 1 2.2491 -1.6317 -1.1525 27 1 1.4591 1.8718 -1.5779 28 1 1.7126 3.0617 -3.7305 29 1 2.7755 -1.6711 -6.0395 30 1 4.3312 -0.7918 -5.8931 31 1 3.5685 2.4805 -6.1999 32 1 1.7921 2.5459 -6.4356 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260545470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:48 Heat of formation + Delta-G solvation = 35.543715 kcal Electronic energy + Delta-G solvation = -15623.519855 eV Core-core repulsion = 13095.845003 eV Total energy + Delta-G solvation = -2527.674852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.98395 -36.38645 -33.70570 -32.35939 -31.85635 -28.98202 -28.15705 -25.73763 -25.05445 -22.33744 -21.84018 -19.95906 -17.76338 -16.56375 -16.18674 -15.56750 -15.17244 -14.99047 -14.65297 -13.82677 -13.55747 -13.36684 -13.11670 -12.62180 -12.50350 -11.99386 -11.97580 -11.84904 -11.23941 -11.11413 -10.86095 -10.52421 -10.38650 -10.30597 -9.61163 -9.23016 -9.13481 -8.99697 -8.59802 -7.80681 -6.97975 -6.26559 -4.34802 1.50963 1.71563 1.82648 2.15889 3.18307 3.25421 3.28109 3.82670 4.18688 4.25859 4.49450 4.75028 5.07008 5.13572 5.21860 5.33365 5.34465 5.48950 5.69816 5.72394 6.00843 6.34444 6.48625 6.60207 6.76977 6.84415 6.93389 7.27428 7.55888 7.64841 7.80369 7.98925 8.49736 8.57292 8.84638 9.33107 10.79723 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.054910 B = 0.004529 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.799752 B = 6180.340303 C = 6445.167468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.269 3.731 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.694 5.694 13 C 0.432 3.568 14 C -0.227 4.227 15 C -0.018 4.018 16 C -0.240 4.240 17 C 0.169 3.831 18 N -0.560 5.560 19 C -0.015 4.015 20 S -0.273 6.273 21 C -0.007 4.007 22 H 0.093 0.907 23 H 0.013 0.987 24 H 0.032 0.968 25 H 0.266 0.734 26 H 0.397 0.603 27 H 0.143 0.857 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 2.099 -12.545 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.167 3.833 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.319 5.319 13 C 0.190 3.810 14 C -0.252 4.252 15 C -0.045 4.045 16 C -0.248 4.248 17 C 0.032 3.968 18 N -0.281 5.281 19 C -0.164 4.164 20 S -0.047 6.047 21 C -0.155 4.155 22 H 0.112 0.888 23 H 0.032 0.968 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.231 0.769 27 H 0.161 0.839 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.024 1.288 -13.312 13.526 hybrid contribution 0.344 0.257 2.091 2.134 sum 2.368 1.545 -11.221 11.572 Atomic orbital electron populations 1.22211 0.98337 0.99940 1.00786 1.18871 0.90954 0.93455 0.80012 0.93902 1.21168 1.32468 1.13478 0.89969 0.91856 1.24861 0.94627 0.94963 0.99101 1.69860 1.35844 1.22512 1.24158 0.86394 0.78617 0.79971 0.81875 1.20466 1.20976 1.19750 1.45575 1.67128 1.12876 1.06325 1.18288 0.87962 0.88567 0.86207 1.21557 1.09458 0.94802 0.99414 1.20908 0.93677 0.99286 0.90588 1.20631 1.12931 0.95444 0.95745 1.21063 0.93892 0.90145 0.91718 1.66426 1.23079 1.40339 0.98237 1.22708 1.03987 1.00221 0.89470 1.87656 1.91142 1.07997 1.17893 1.22553 1.05231 0.96311 0.91451 0.88824 0.96751 0.94914 0.92428 0.76910 0.83883 0.85377 0.86692 0.87380 0.88663 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.20 37.15 0.34 -3.17 16 2 C 0.27 6.30 2.25 -69.09 -0.16 6.15 16 3 H 0.04 1.07 6.47 -51.93 -0.34 0.74 16 4 C -0.53 -13.60 8.73 -34.44 -0.30 -13.91 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -23.44 11.32 55.43 0.63 -22.81 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.69 -14.59 5.24 -55.22 -0.29 -14.88 16 13 C 0.43 8.56 7.64 -155.60 -1.19 7.37 16 14 C -0.23 -4.11 8.85 -39.42 -0.35 -4.46 16 15 C -0.02 -0.27 10.06 -39.03 -0.39 -0.66 16 16 C -0.24 -3.57 5.93 -103.50 -0.61 -4.19 16 17 C 0.17 2.76 6.99 -81.35 -0.57 2.19 16 18 N -0.56 -10.58 10.35 -8.14 -0.08 -10.67 16 19 C -0.02 -0.20 7.39 36.88 0.27 0.07 16 20 S -0.27 -3.45 23.44 -107.50 -2.52 -5.97 16 21 C -0.01 -0.08 7.32 36.79 0.27 0.19 16 22 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 23 H 0.01 0.29 7.69 -51.93 -0.40 -0.11 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.40 8.13 8.66 -40.82 -0.35 7.77 16 27 H 0.14 2.65 6.15 -52.49 -0.32 2.33 16 28 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -26.73 280.71 -9.64 -36.37 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.80 Total: 7.41 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.78 Total: -8.76 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.25 Total: -48.36 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.52 Total: -5.97 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.73 -9.64 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.915 kcal (2) G-P(sol) polarization free energy of solvation -26.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds