Wall clock time and date at job start Mon Mar 30 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47342 * 2 1 4 4 C 1.50703 * 109.47297 * 119.99379 * 2 1 3 5 5 H 1.07998 * 119.99818 * 120.00214 * 4 2 1 6 6 C 1.37880 * 120.00149 * 300.00685 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46829 * 90.00126 * 8 6 4 10 10 H 1.48499 * 109.47184 * 209.99406 * 8 6 4 11 11 H 1.48497 * 109.47470 * 329.99896 * 8 6 4 12 12 N 1.46495 * 109.47365 * 239.99807 * 2 1 3 13 13 C 1.39000 * 120.00330 * 84.99983 * 12 2 1 14 14 C 1.39150 * 119.89748 * 0.02562 * 13 12 2 15 15 C 1.37757 * 118.58829 * 180.02562 * 14 13 12 16 16 C 1.40180 * 119.55082 * 359.97438 * 15 14 13 17 17 C 1.37172 * 118.93782 * 359.97438 * 16 15 14 18 18 N 1.31706 * 119.90579 * 179.97438 * 13 12 2 19 19 C 1.52449 * 115.54627 * 180.02562 * 17 16 15 20 20 S 1.83220 * 103.53046 * 342.44420 * 19 17 16 21 21 C 1.52282 * 125.26652 * 180.02562 * 16 15 14 22 22 H 1.09002 * 109.47321 * 300.00120 * 1 2 3 23 23 H 1.08996 * 109.47327 * 60.00462 * 1 2 3 24 24 H 1.09006 * 109.47342 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00177 * 180.02562 * 7 6 4 26 26 H 0.96999 * 119.99978 * 264.99424 * 12 2 1 27 27 H 1.07993 * 120.70982 * 359.97438 * 14 13 12 28 28 H 1.08003 * 120.22413 * 180.02562 * 15 14 13 29 29 H 1.09000 * 110.61057 * 223.93428 * 19 17 16 30 30 H 1.08999 * 110.61225 * 100.95762 * 19 17 16 31 31 H 1.09004 * 110.61973 * 78.98810 * 21 16 15 32 32 H 1.08997 * 110.62650 * 315.97544 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5883 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3213 -1.1200 4.0080 9 1 3.6296 -0.5454 4.4124 10 1 1.3431 -0.9489 5.1121 11 1 2.4859 -2.5659 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 2.1511 0.0027 -2.3935 14 6 1.8200 1.3529 -2.4536 15 6 1.9615 2.0135 -3.6541 16 6 2.4316 1.3163 -4.7757 17 6 2.7413 -0.0139 -4.6485 18 7 2.5908 -0.6200 -3.4675 19 6 3.2457 -0.6956 -5.9154 20 16 2.7266 0.4453 -7.2517 21 6 2.6374 1.9151 -6.1606 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7092 1.1620 3.4843 26 1 2.2491 -1.6317 -1.1525 27 1 1.4591 1.8718 -1.5779 28 1 1.7126 3.0617 -3.7305 29 1 2.7755 -1.6711 -6.0395 30 1 4.3312 -0.7918 -5.8931 31 1 3.5685 2.4805 -6.1999 32 1 1.7921 2.5459 -6.4356 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260545470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:47 Heat of formation + Delta-G solvation = 21.160326 kcal Electronic energy + Delta-G solvation = -15624.143566 eV Core-core repulsion = 13095.845003 eV Total energy + Delta-G solvation = -2528.298563 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.32373 -37.96664 -35.31944 -33.71314 -33.39744 -30.56119 -29.37874 -27.47145 -26.54221 -23.68744 -23.30780 -21.54147 -19.33337 -17.95929 -17.72286 -16.94258 -16.67840 -16.28645 -15.96548 -15.40801 -14.92816 -14.63131 -14.32149 -14.15732 -13.84591 -13.66555 -13.25008 -13.01050 -12.95068 -12.89762 -12.62335 -12.28322 -12.11015 -11.58966 -11.18775 -10.86426 -10.63470 -10.46959 -10.35302 -8.78002 -8.46669 -8.21289 -6.36556 0.21557 0.45709 0.78740 1.14490 1.42326 1.43994 1.53515 2.28870 2.51237 2.84595 3.09297 3.24306 3.59811 3.97360 4.13454 4.26392 4.36192 4.41482 4.49170 4.60039 4.67987 4.80925 4.93630 5.02070 5.08655 5.22710 5.37288 5.55166 5.67155 5.83281 6.01749 6.23055 6.69016 6.91961 7.24101 7.39128 8.83721 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.054910 B = 0.004529 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.799752 B = 6180.340303 C = 6445.167468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.281 3.719 3 H 0.022 0.978 4 C -0.551 4.551 5 H 0.059 0.941 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.270 1.270 12 N -0.705 5.705 13 C 0.409 3.591 14 C -0.247 4.247 15 C -0.008 4.008 16 C -0.231 4.231 17 C 0.150 3.850 18 N -0.577 5.577 19 C -0.013 4.013 20 S -0.274 6.274 21 C -0.002 4.002 22 H 0.073 0.927 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.268 0.732 26 H 0.395 0.605 27 H 0.132 0.868 28 H 0.165 0.835 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 2.737 -14.068 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.177 3.823 3 H 0.040 0.960 4 C -0.589 4.589 5 H 0.077 0.923 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.790 3.210 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.194 1.194 12 N -0.332 5.332 13 C 0.169 3.831 14 C -0.273 4.273 15 C -0.034 4.034 16 C -0.238 4.238 17 C 0.013 3.987 18 N -0.298 5.298 19 C -0.162 4.162 20 S -0.047 6.047 21 C -0.150 4.150 22 H 0.092 0.908 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.229 0.771 27 H 0.149 0.851 28 H 0.183 0.817 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.527 1.935 -14.888 15.224 hybrid contribution 0.216 0.116 2.384 2.397 sum 2.743 2.051 -12.503 12.964 Atomic orbital electron populations 1.22020 0.98158 0.99392 1.00301 1.18513 0.90957 0.92283 0.80521 0.96024 1.21470 1.32635 1.13598 0.91206 0.92256 1.25593 0.94777 0.95605 1.01651 1.69963 1.36544 1.23475 1.24765 0.85456 0.78060 0.78931 0.78585 1.20195 1.20533 1.19446 1.45254 1.68826 1.12690 1.06447 1.18434 0.89289 0.89261 0.86117 1.21579 1.10835 0.94406 1.00453 1.21290 0.91911 1.00880 0.89366 1.21056 1.10520 0.95011 0.97191 1.21711 0.93882 0.91379 0.91750 1.66384 1.23297 1.41171 0.98904 1.22772 1.04925 1.00422 0.88044 1.87733 1.91220 1.08248 1.17499 1.22699 1.07428 0.96109 0.88747 0.90838 0.95502 0.95339 0.92312 0.77126 0.85064 0.81700 0.86251 0.85823 0.86362 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.54 9.20 71.98 0.66 -5.87 16 2 C 0.28 13.55 2.25 44.24 0.10 13.65 16 3 H 0.02 1.14 6.47 -2.38 -0.02 1.13 16 4 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 5 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 6 C 0.02 1.28 5.30 84.66 0.45 1.73 16 7 N -0.91 -48.84 11.32 21.45 0.24 -48.60 16 8 Si 0.96 41.40 29.54 68.60 2.03 43.43 16 9 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 N -0.70 -30.57 5.24 -328.63 -1.72 -32.29 16 13 C 0.41 16.41 7.64 133.27 1.02 17.43 16 14 C -0.25 -8.93 8.85 22.37 0.20 -8.73 16 15 C -0.01 -0.22 10.06 22.63 0.23 0.01 16 16 C -0.23 -6.24 5.93 -19.13 -0.11 -6.35 16 17 C 0.15 4.63 6.99 42.60 0.30 4.93 16 18 N -0.58 -21.67 10.35 -179.65 -1.86 -23.53 16 19 C -0.01 -0.32 7.39 71.80 0.53 0.22 16 20 S -0.27 -6.06 23.44 -56.49 -1.32 -7.38 16 21 C 0.00 -0.03 7.32 71.74 0.53 0.49 16 22 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 23 H 0.03 1.13 7.69 -2.39 -0.02 1.11 16 24 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 26 H 0.39 16.80 8.66 -92.71 -0.80 15.99 16 27 H 0.13 4.99 6.15 -2.91 -0.02 4.97 16 28 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -57.47 280.71 1.82 -55.65 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.34 Total: 23.77 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.12 Total: -11.04 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -3.34 Total: -104.42 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -1.32 Total: -7.38 kcal Total: -57.47 1.82 -55.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.808 kcal (2) G-P(sol) polarization free energy of solvation -57.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds