Wall clock time and date at job start Mon Mar 30 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48504 * 109.46951 * 270.00330 * 3 2 1 5 5 H 1.48503 * 109.46780 * 29.99684 * 3 2 1 6 6 H 1.48490 * 109.47464 * 149.99877 * 3 2 1 7 7 C 1.39942 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00371 * 167.24424 * 7 2 1 9 9 C 1.41397 * 119.99976 * 347.24535 * 7 2 1 10 10 C 1.40742 * 120.24059 * 331.89920 * 9 7 2 11 11 C 1.37596 * 119.74049 * 180.31860 * 10 9 7 12 12 C 1.38658 * 120.25128 * 359.65597 * 11 10 9 13 13 C 1.38612 * 120.50177 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24927 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.13081 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.46678 * 144.02167 * 15 14 13 17 17 F 1.39894 * 109.46783 * 24.02540 * 15 14 13 18 18 C 1.52995 * 109.47407 * 264.02044 * 15 14 13 19 19 H 1.09003 * 110.83341 * 308.93638 * 18 15 14 20 20 C 1.54808 * 110.90972 * 185.28985 * 18 15 14 21 21 C 1.54099 * 104.18792 * 220.92292 * 20 18 15 22 22 O 1.43738 * 107.29340 * 357.96971 * 21 20 18 23 23 C 1.44375 * 106.97865 * 26.51123 * 22 21 20 24 24 H 0.97006 * 120.00575 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.12899 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.87706 * 179.68195 * 11 10 9 27 27 H 1.08001 * 119.75086 * 180.02562 * 12 11 10 28 28 H 1.07994 * 119.87951 * 179.97438 * 13 12 11 29 29 H 1.08999 * 110.48523 * 339.59592 * 20 18 15 30 30 H 1.09002 * 110.48768 * 102.24444 * 20 18 15 31 31 H 1.09003 * 109.87948 * 117.39162 * 21 20 18 32 32 H 1.08999 * 109.87964 * 238.39262 * 21 20 18 33 33 H 1.08994 * 110.62430 * 201.43936 * 23 22 21 34 34 H 1.09003 * 110.61899 * 78.44179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0680 -1.2235 -0.2060 9 6 1.3272 -2.4212 0.2714 10 6 0.1780 -2.4211 1.0839 11 6 -0.4726 -3.6048 1.3462 12 6 -0.0042 -4.7936 0.8077 13 6 1.1227 -4.8046 0.0007 14 6 1.7901 -3.6327 -0.2742 15 6 3.0154 -3.6478 -1.1514 16 1 3.0372 -2.7443 -1.7607 17 9 2.9787 -4.7712 -1.9844 18 6 4.2689 -3.7029 -0.2758 19 1 4.2422 -2.9262 0.4885 20 6 5.5500 -3.5865 -1.1371 21 6 6.5198 -4.6077 -0.5114 22 8 5.8531 -5.1925 0.6198 23 6 4.4347 -5.1043 0.3652 24 1 -0.4851 0.8400 -0.0004 25 1 -0.1885 -1.4964 1.5044 26 1 -1.3516 -3.6080 1.9736 27 1 -0.5214 -5.7180 1.0185 28 1 1.4790 -5.7363 -0.4131 29 1 5.3377 -3.8477 -2.1738 30 1 5.9626 -2.5797 -1.0731 31 1 6.7631 -5.3819 -1.2391 32 1 7.4306 -4.1038 -0.1879 33 1 3.8727 -5.1691 1.2968 34 1 4.1201 -5.8835 -0.3290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260552821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:39 Heat of formation + Delta-G solvation = -91.358151 kcal Electronic energy + Delta-G solvation = -18616.873061 eV Core-core repulsion = 15621.022498 eV Total energy + Delta-G solvation = -2995.850563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.99494 -38.94650 -37.59471 -33.73237 -32.99788 -30.50211 -29.57086 -28.55227 -25.70083 -24.76000 -22.27946 -20.98436 -20.50832 -19.42841 -17.39751 -16.36512 -15.95185 -15.73529 -15.21426 -14.90844 -14.48231 -14.04055 -13.70829 -13.23194 -12.98931 -12.84419 -12.60783 -12.15237 -11.72509 -11.36004 -11.27491 -11.18086 -11.11938 -11.08626 -10.64263 -10.50234 -10.29316 -10.09422 -9.64285 -9.39140 -9.29911 -9.24029 -7.46439 -7.43295 -6.83263 -4.51393 2.67537 2.86666 3.01092 3.04331 3.15287 3.84760 4.21044 4.55268 4.82511 5.08929 5.13680 5.35826 5.52752 5.53493 5.64706 5.80291 5.96857 5.99796 6.03464 6.16335 6.17393 6.29370 6.35232 6.42357 6.56171 6.79284 6.97923 7.11717 7.16934 7.30454 7.49052 7.77596 7.91606 7.99693 8.16798 8.49917 8.76215 8.84163 10.10644 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.009265 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.382024 B = 3021.254664 C = 4069.498252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.079 0.921 9 C 0.126 3.874 10 C -0.156 4.156 11 C -0.104 4.104 12 C -0.237 4.237 13 C -0.075 4.075 14 C -0.234 4.234 15 C 0.168 3.832 16 H 0.089 0.911 17 F -0.223 7.223 18 C -0.137 4.137 19 H 0.106 0.894 20 C -0.155 4.155 21 C 0.050 3.950 22 O -0.384 6.384 23 C 0.056 3.944 24 H 0.281 0.719 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -2.553 -1.026 7.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.097 0.903 9 C 0.123 3.877 10 C -0.176 4.176 11 C -0.123 4.123 12 C -0.256 4.256 13 C -0.093 4.093 14 C -0.236 4.236 15 C 0.132 3.868 16 H 0.107 0.893 17 F -0.204 7.204 18 C -0.156 4.156 19 H 0.124 0.876 20 C -0.193 4.193 21 C -0.027 4.027 22 O -0.303 6.303 23 C -0.020 4.020 24 H 0.092 0.908 25 H 0.138 0.862 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.491 -2.502 -0.875 7.011 hybrid contribution 0.066 0.880 -0.307 0.934 sum 6.556 -1.623 -1.182 6.857 Atomic orbital electron populations 1.69791 1.07517 1.29288 1.35346 1.25887 0.94770 1.01254 0.92183 0.86339 0.80624 0.80711 0.79299 1.19433 1.20057 1.18391 1.19557 0.96454 0.90598 1.42962 0.90250 1.17301 0.91194 0.90972 0.88206 1.21341 0.98655 0.96633 1.00939 1.20753 0.98489 0.93500 0.99523 1.20386 1.00926 0.96616 1.07713 1.20320 0.95488 0.96088 0.97410 1.19810 1.01141 0.95043 1.07599 1.19880 0.92908 0.85076 0.88929 0.89314 1.92682 1.97507 1.56156 1.74035 1.23325 0.93907 0.99552 0.98861 0.87622 1.23018 0.95651 1.00213 1.00427 1.23071 0.95994 0.95011 0.88627 1.88810 1.18704 1.81637 1.41187 1.23549 0.81292 0.95955 1.01203 0.90774 0.86209 0.89335 0.89359 0.88908 0.90496 0.90427 0.92875 0.90369 0.88686 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 10.91 55.55 0.61 -19.09 16 2 C 0.08 1.83 5.22 -17.35 -0.09 1.74 16 3 Si 0.91 17.81 29.58 -169.99 -5.03 12.78 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.47 -11.38 8.03 -37.74 -0.30 -11.68 16 8 H 0.08 1.82 6.21 -52.48 -0.33 1.50 16 9 C 0.13 3.14 5.55 -106.82 -0.59 2.54 16 10 C -0.16 -3.91 8.66 -38.87 -0.34 -4.25 16 11 C -0.10 -2.39 10.02 -39.66 -0.40 -2.79 16 12 C -0.24 -5.23 10.05 -39.29 -0.39 -5.63 16 13 C -0.07 -1.66 9.21 -39.66 -0.37 -2.02 16 14 C -0.23 -5.35 4.92 -103.91 -0.51 -5.86 16 15 C 0.17 3.36 2.53 -27.89 -0.07 3.29 16 16 H 0.09 1.82 7.17 -51.93 -0.37 1.45 16 17 F -0.22 -4.44 14.58 2.25 0.03 -4.40 16 18 C -0.14 -2.43 2.73 -88.62 -0.24 -2.67 16 19 H 0.11 2.00 7.39 -51.93 -0.38 1.61 16 20 C -0.16 -2.28 6.54 -25.20 -0.16 -2.44 16 21 C 0.05 0.70 7.70 37.73 0.29 0.99 16 22 O -0.38 -6.56 11.52 -35.23 -0.41 -6.96 16 23 C 0.06 0.97 6.71 38.21 0.26 1.23 16 24 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 25 H 0.12 3.09 6.25 -52.49 -0.33 2.76 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.09 1.90 7.45 -52.49 -0.39 1.51 16 29 H 0.08 1.09 7.63 -51.93 -0.40 0.70 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.06 1.12 7.11 -51.93 -0.37 0.75 16 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -26.07 281.98 -7.71 -33.77 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.24 Total: 7.22 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -2.92 Total: -27.56 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.41 Total: -6.96 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.03 Total: -4.40 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.07 -7.71 -33.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.585 kcal (2) G-P(sol) polarization free energy of solvation -26.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds