Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48504 * 109.46951 * 270.00330 * 3 2 1 5 5 H 1.48503 * 109.46780 * 29.99684 * 3 2 1 6 6 H 1.48490 * 109.47464 * 149.99877 * 3 2 1 7 7 C 1.39942 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00371 * 167.24424 * 7 2 1 9 9 C 1.41397 * 119.99976 * 347.24535 * 7 2 1 10 10 C 1.40742 * 120.24059 * 331.89920 * 9 7 2 11 11 C 1.37596 * 119.74049 * 180.31860 * 10 9 7 12 12 C 1.38658 * 120.25128 * 359.65597 * 11 10 9 13 13 C 1.38612 * 120.50177 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24927 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.13081 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.46678 * 144.02167 * 15 14 13 17 17 F 1.39894 * 109.46783 * 24.02540 * 15 14 13 18 18 C 1.52995 * 109.47407 * 264.02044 * 15 14 13 19 19 H 1.09003 * 110.83341 * 308.93638 * 18 15 14 20 20 C 1.54808 * 110.90972 * 185.28985 * 18 15 14 21 21 C 1.54099 * 104.18792 * 220.92292 * 20 18 15 22 22 O 1.43738 * 107.29340 * 357.96971 * 21 20 18 23 23 C 1.44375 * 106.97865 * 26.51123 * 22 21 20 24 24 H 0.97006 * 120.00575 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.12899 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.87706 * 179.68195 * 11 10 9 27 27 H 1.08001 * 119.75086 * 180.02562 * 12 11 10 28 28 H 1.07994 * 119.87951 * 179.97438 * 13 12 11 29 29 H 1.08999 * 110.48523 * 339.59592 * 20 18 15 30 30 H 1.09002 * 110.48768 * 102.24444 * 20 18 15 31 31 H 1.09003 * 109.87948 * 117.39162 * 21 20 18 32 32 H 1.08999 * 109.87964 * 238.39262 * 21 20 18 33 33 H 1.08994 * 110.62430 * 201.43936 * 23 22 21 34 34 H 1.09003 * 110.61899 * 78.44179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0680 -1.2235 -0.2060 9 6 1.3272 -2.4212 0.2714 10 6 0.1780 -2.4211 1.0839 11 6 -0.4726 -3.6048 1.3462 12 6 -0.0042 -4.7936 0.8077 13 6 1.1227 -4.8046 0.0007 14 6 1.7901 -3.6327 -0.2742 15 6 3.0154 -3.6478 -1.1514 16 1 3.0372 -2.7443 -1.7607 17 9 2.9787 -4.7712 -1.9844 18 6 4.2689 -3.7029 -0.2758 19 1 4.2422 -2.9262 0.4885 20 6 5.5500 -3.5865 -1.1371 21 6 6.5198 -4.6077 -0.5114 22 8 5.8531 -5.1925 0.6198 23 6 4.4347 -5.1043 0.3652 24 1 -0.4851 0.8400 -0.0004 25 1 -0.1885 -1.4964 1.5044 26 1 -1.3516 -3.6080 1.9736 27 1 -0.5214 -5.7180 1.0185 28 1 1.4790 -5.7363 -0.4131 29 1 5.3377 -3.8477 -2.1738 30 1 5.9626 -2.5797 -1.0731 31 1 6.7631 -5.3819 -1.2391 32 1 7.4306 -4.1038 -0.1879 33 1 3.8727 -5.1691 1.2968 34 1 4.1201 -5.8835 -0.3290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260552821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -103.845457 kcal Electronic energy + Delta-G solvation = -18617.414551 eV Core-core repulsion = 15621.022498 eV Total energy + Delta-G solvation = -2996.392053 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.60453 -40.28036 -39.32295 -35.52655 -34.48269 -32.02102 -31.34454 -29.94547 -27.43979 -26.40286 -23.56040 -22.78885 -21.99297 -21.02872 -19.19634 -17.76094 -17.51852 -17.23127 -16.72770 -16.56049 -15.86119 -15.66672 -15.19928 -14.85850 -14.50914 -14.37782 -14.33016 -13.65729 -13.32235 -13.03088 -12.83510 -12.74069 -12.72450 -12.41585 -12.20646 -12.05169 -11.67713 -11.60717 -11.40719 -11.06955 -10.97398 -10.61206 -9.28516 -9.24697 -8.60927 -6.37116 0.92358 1.07419 1.40297 1.50279 1.54735 2.20543 2.75358 2.94650 3.50629 3.62779 3.78629 3.85943 4.10820 4.17936 4.24233 4.37662 4.42305 4.54655 4.65629 4.67640 4.77932 4.86212 4.88806 4.99454 5.09367 5.19427 5.25362 5.35038 5.51168 5.68875 5.88118 5.97219 6.10910 6.16717 6.35085 6.67141 6.92955 7.01814 8.35364 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.009265 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.382024 B = 3021.254664 C = 4069.498252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.036 3.964 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.488 4.488 8 H 0.087 0.913 9 C 0.099 3.901 10 C -0.185 4.185 11 C -0.110 4.110 12 C -0.238 4.238 13 C -0.083 4.083 14 C -0.240 4.240 15 C 0.174 3.826 16 H 0.082 0.918 17 F -0.221 7.221 18 C -0.135 4.135 19 H 0.089 0.911 20 C -0.150 4.150 21 C 0.046 3.954 22 O -0.399 6.399 23 C 0.062 3.938 24 H 0.286 0.714 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 -2.768 -1.511 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.518 4.518 8 H 0.105 0.895 9 C 0.096 3.904 10 C -0.204 4.204 11 C -0.129 4.129 12 C -0.258 4.258 13 C -0.101 4.101 14 C -0.242 4.242 15 C 0.138 3.862 16 H 0.099 0.901 17 F -0.202 7.202 18 C -0.154 4.154 19 H 0.108 0.892 20 C -0.187 4.187 21 C -0.030 4.030 22 O -0.319 6.319 23 C -0.015 4.015 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.926 -2.735 -1.363 8.495 hybrid contribution -0.419 0.844 -0.164 0.957 sum 7.507 -1.891 -1.527 7.891 Atomic orbital electron populations 1.69864 1.08984 1.30385 1.36251 1.26714 0.95437 1.04396 0.91357 0.85297 0.79288 0.76343 0.79468 1.18755 1.19686 1.17862 1.19815 0.96902 0.91194 1.43849 0.89546 1.17628 0.91711 0.92172 0.88871 1.21357 0.99891 0.96852 1.02348 1.21013 0.98980 0.93220 0.99640 1.20742 1.00811 0.97346 1.06853 1.20603 0.95517 0.96577 0.97373 1.20146 1.01984 0.94668 1.07357 1.19772 0.92939 0.84780 0.88687 0.90063 1.92680 1.97523 1.56022 1.73972 1.23187 0.94243 0.99377 0.98625 0.89224 1.23025 0.94094 1.01525 1.00097 1.23303 0.96193 0.95357 0.88188 1.88794 1.18328 1.82055 1.42685 1.23419 0.81794 0.95626 1.00620 0.90304 0.87935 0.87308 0.86585 0.87180 0.89891 0.88920 0.91231 0.88062 0.89746 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.02 10.91 21.82 0.24 -41.78 16 2 C 0.04 1.71 5.22 85.26 0.44 2.15 16 3 Si 0.97 36.39 29.58 68.60 2.03 38.42 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 7 C -0.49 -24.20 8.03 23.46 0.19 -24.01 16 8 H 0.09 4.00 6.21 -2.91 -0.02 3.98 16 9 C 0.10 5.01 5.55 -21.29 -0.12 4.89 16 10 C -0.19 -9.50 8.66 22.73 0.20 -9.30 16 11 C -0.11 -5.05 10.02 22.22 0.22 -4.83 16 12 C -0.24 -10.24 10.05 22.46 0.23 -10.02 16 13 C -0.08 -3.59 9.21 22.22 0.20 -3.38 16 14 C -0.24 -10.97 4.92 -19.40 -0.10 -11.06 16 15 C 0.17 6.86 2.53 29.85 0.08 6.93 16 16 H 0.08 3.32 7.17 -2.39 -0.02 3.30 16 17 F -0.22 -8.49 14.58 44.97 0.66 -7.84 16 18 C -0.14 -4.64 2.73 -9.50 -0.03 -4.67 16 19 H 0.09 3.37 7.39 -2.39 -0.02 3.35 16 20 C -0.15 -4.03 6.54 31.58 0.21 -3.82 16 21 C 0.05 1.15 7.70 72.35 0.56 1.70 16 22 O -0.40 -12.86 11.52 -148.98 -1.72 -14.58 16 23 C 0.06 2.07 6.71 72.66 0.49 2.56 16 24 H 0.29 13.25 8.30 -92.70 -0.77 12.48 16 25 H 0.10 5.52 6.25 -2.91 -0.02 5.50 16 26 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.11 4.34 7.45 -2.91 -0.02 4.32 16 29 H 0.08 2.14 7.63 -2.39 -0.02 2.12 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.07 2.18 7.11 -2.39 -0.02 2.17 16 Total: -1.00 -55.43 281.98 4.88 -50.55 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 1.10 Total: 28.08 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 2.57 Total: -52.85 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.24 Total: -41.78 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.72 Total: -14.58 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.66 Total: -7.84 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -55.43 4.88 -50.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.295 kcal (2) G-P(sol) polarization free energy of solvation -55.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds