Wall clock time and date at job start Mon Mar 30 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 120.00534 * 2 1 4 4 H 1.48493 * 109.47104 * 269.99975 * 3 2 1 5 5 H 1.48506 * 109.46824 * 29.99909 * 3 2 1 6 6 H 1.48499 * 109.47238 * 149.99984 * 3 2 1 7 7 C 1.39944 * 119.99327 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00046 * 167.31917 * 7 2 1 9 9 C 1.41399 * 120.00465 * 347.32182 * 7 2 1 10 10 C 1.40736 * 120.23973 * 331.79012 * 9 7 2 11 11 C 1.37601 * 119.74199 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.24921 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.50391 * 359.76845 * 12 11 10 14 14 C 1.37643 * 120.24742 * 0.51173 * 13 12 11 15 15 C 1.50694 * 120.13044 * 179.74443 * 14 13 12 16 16 H 1.08997 * 109.47588 * 145.28683 * 15 14 13 17 17 F 1.39896 * 109.47023 * 25.28222 * 15 14 13 18 18 C 1.53003 * 109.47200 * 265.28707 * 15 14 13 19 19 H 1.09008 * 110.75224 * 308.77417 * 18 15 14 20 20 C 1.55310 * 110.84938 * 72.24591 * 18 15 14 21 21 C 1.55203 * 100.82418 * 152.18128 * 20 18 15 22 22 O 1.43641 * 105.26211 * 323.81702 * 21 20 18 23 23 C 1.43238 * 109.97200 * 24.28459 * 22 21 20 24 24 H 0.97004 * 119.99367 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.12650 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.87054 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.74721 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.88167 * 180.25380 * 13 12 11 29 29 H 1.09004 * 111.12067 * 270.24525 * 20 18 15 30 30 H 1.08992 * 111.12444 * 34.40227 * 20 18 15 31 31 H 1.09005 * 110.36436 * 204.79652 * 21 20 18 32 32 H 1.09004 * 110.12868 * 82.71659 * 21 20 18 33 33 H 1.08997 * 109.83327 * 238.77594 * 23 22 21 34 34 H 1.09000 * 109.90129 * 117.84816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0462 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4399 0.7000 7 6 2.0078 -1.2120 0.0005 8 1 3.0681 -1.2237 -0.2048 9 6 1.3267 -2.4215 0.2698 10 6 0.1779 -2.4221 1.0829 11 6 -0.4773 -3.6050 1.3378 12 6 -0.0101 -4.7929 0.7967 13 6 1.1172 -4.8034 -0.0098 14 6 1.7919 -3.6331 -0.2736 15 6 3.0205 -3.6484 -1.1460 16 1 3.0614 -2.7303 -1.7322 17 9 2.9672 -4.7496 -2.0072 18 6 4.2689 -3.7483 -0.2671 19 1 4.2530 -2.9884 0.5143 20 6 4.4009 -5.1691 0.3462 21 6 5.9396 -5.2683 0.5232 22 8 6.4956 -4.5824 -0.6098 23 6 5.5512 -3.6335 -1.1190 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1884 -1.4977 1.5043 26 1 -1.3588 -3.6079 1.9618 27 1 -0.5309 -5.7166 1.0017 28 1 1.4699 -5.7340 -0.4294 29 1 3.8869 -5.2322 1.3053 30 1 4.0362 -5.9301 -0.3436 31 1 6.2546 -6.3118 0.5259 32 1 6.2431 -4.7784 1.4485 33 1 5.3245 -3.8599 -2.1608 34 1 5.9587 -2.6256 -1.0400 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260552827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:41 Heat of formation + Delta-G solvation = -91.537815 kcal Electronic energy + Delta-G solvation = -18605.628070 eV Core-core repulsion = 15609.769716 eV Total energy + Delta-G solvation = -2995.858354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.97532 -38.96422 -37.61195 -33.74003 -33.03264 -30.32271 -29.43872 -29.03641 -25.73360 -24.59086 -22.20238 -20.97811 -20.66190 -19.41334 -17.40580 -16.47717 -15.98576 -15.69525 -15.09936 -14.91360 -14.56308 -14.07231 -13.79713 -13.18174 -12.92166 -12.83982 -12.62641 -12.09729 -11.76361 -11.43318 -11.28223 -11.20239 -11.12695 -11.04330 -10.65036 -10.50837 -10.33714 -10.09479 -9.64278 -9.31656 -9.28868 -9.25747 -7.47571 -7.44443 -6.84231 -4.52541 2.66768 2.86020 3.00827 3.03972 3.14714 3.84187 4.12383 4.53263 4.76366 5.07477 5.17796 5.43882 5.47980 5.53017 5.59566 5.84069 5.92318 5.99284 6.08681 6.14767 6.19272 6.31571 6.36093 6.41046 6.56340 6.75885 6.96892 7.15609 7.20097 7.29710 7.47854 7.76750 7.90326 7.98550 8.15851 8.48721 8.75138 8.83006 10.09727 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.009208 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.389470 B = 3040.030541 C = 4098.308070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.079 0.921 9 C 0.125 3.875 10 C -0.157 4.157 11 C -0.104 4.104 12 C -0.238 4.238 13 C -0.072 4.072 14 C -0.232 4.232 15 C 0.168 3.832 16 H 0.089 0.911 17 F -0.221 7.221 18 C -0.139 4.139 19 H 0.104 0.896 20 C -0.145 4.145 21 C 0.052 3.948 22 O -0.389 6.389 23 C 0.054 3.946 24 H 0.281 0.719 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 -3.303 0.975 6.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.097 0.903 9 C 0.123 3.877 10 C -0.177 4.177 11 C -0.123 4.123 12 C -0.258 4.258 13 C -0.090 4.090 14 C -0.233 4.233 15 C 0.132 3.868 16 H 0.107 0.893 17 F -0.202 7.202 18 C -0.158 4.158 19 H 0.122 0.878 20 C -0.183 4.183 21 C -0.025 4.025 22 O -0.309 6.309 23 C -0.023 4.023 24 H 0.092 0.908 25 H 0.138 0.862 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.760 -3.191 0.855 6.640 hybrid contribution -0.102 0.822 0.058 0.831 sum 5.658 -2.369 0.913 6.201 Atomic orbital electron populations 1.69798 1.07521 1.29296 1.35307 1.25891 0.94780 1.01270 0.92165 0.86334 0.80592 0.80675 0.79358 1.19380 1.20058 1.18389 1.19546 0.96418 0.90608 1.43044 0.90298 1.17308 0.91225 0.90965 0.88202 1.21337 0.98675 0.96630 1.01016 1.20750 0.98421 0.93518 0.99563 1.20382 1.00971 0.96618 1.07804 1.20310 0.95359 0.96098 0.97279 1.19773 1.00866 0.95038 1.07657 1.19857 0.92919 0.85761 0.88273 0.89318 1.92692 1.97452 1.57763 1.72330 1.23334 0.94409 0.98952 0.99124 0.87797 1.23248 0.95450 0.97129 1.02443 1.23397 0.93048 0.96848 0.89188 1.88327 1.40791 1.54755 1.47000 1.23216 0.88378 0.92628 0.98064 0.90766 0.86226 0.89360 0.89411 0.88956 0.89686 0.89956 0.90214 0.92502 0.91144 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.65 10.91 55.55 0.61 -19.05 16 2 C 0.08 1.82 5.22 -17.34 -0.09 1.73 16 3 Si 0.91 17.76 29.58 -169.99 -5.03 12.74 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.47 -11.34 8.09 -37.74 -0.31 -11.65 16 8 H 0.08 1.80 6.37 -52.49 -0.33 1.46 16 9 C 0.13 3.11 5.55 -106.82 -0.59 2.52 16 10 C -0.16 -3.92 8.67 -38.87 -0.34 -4.25 16 11 C -0.10 -2.37 10.02 -39.66 -0.40 -2.77 16 12 C -0.24 -5.23 10.05 -39.29 -0.39 -5.63 16 13 C -0.07 -1.59 9.13 -39.66 -0.36 -1.95 16 14 C -0.23 -5.27 4.92 -103.91 -0.51 -5.78 16 15 C 0.17 3.36 2.52 -27.88 -0.07 3.29 16 16 H 0.09 1.82 7.07 -51.93 -0.37 1.45 16 17 F -0.22 -4.48 14.60 2.25 0.03 -4.44 16 18 C -0.14 -2.42 2.64 -88.67 -0.23 -2.66 16 19 H 0.10 1.89 7.63 -51.92 -0.40 1.49 16 20 C -0.15 -2.30 6.09 -24.34 -0.15 -2.45 16 21 C 0.05 0.73 7.78 38.32 0.30 1.03 16 22 O -0.39 -6.43 11.36 -35.23 -0.40 -6.83 16 23 C 0.05 0.86 7.35 37.88 0.28 1.14 16 24 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 25 H 0.12 3.07 6.25 -52.49 -0.33 2.74 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.09 1.89 7.48 -52.49 -0.39 1.50 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.35 7.13 -51.93 -0.37 0.98 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.13 7.56 -51.93 -0.39 0.73 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 282.26 15.07 4.25 4.25 Total: -1.00 -26.06 282.26 -7.65 -33.72 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.25 Total: 7.04 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -2.87 Total: -27.42 kcal Atomic # 7 Polarization: -19.65 SS G_CDS: 0.61 Total: -19.05 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.40 Total: -6.83 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.03 Total: -4.44 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.06 -7.65 -33.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.821 kcal (2) G-P(sol) polarization free energy of solvation -26.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds