Wall clock time and date at job start Mon Mar 30 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 120.00534 * 2 1 4 4 H 1.48493 * 109.47104 * 269.99975 * 3 2 1 5 5 H 1.48506 * 109.46824 * 29.99909 * 3 2 1 6 6 H 1.48499 * 109.47238 * 149.99984 * 3 2 1 7 7 C 1.39944 * 119.99327 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00046 * 167.31917 * 7 2 1 9 9 C 1.41399 * 120.00465 * 347.32182 * 7 2 1 10 10 C 1.40736 * 120.23973 * 331.79012 * 9 7 2 11 11 C 1.37601 * 119.74199 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.24921 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.50391 * 359.76845 * 12 11 10 14 14 C 1.37643 * 120.24742 * 0.51173 * 13 12 11 15 15 C 1.50694 * 120.13044 * 179.74443 * 14 13 12 16 16 H 1.08997 * 109.47588 * 145.28683 * 15 14 13 17 17 F 1.39896 * 109.47023 * 25.28222 * 15 14 13 18 18 C 1.53003 * 109.47200 * 265.28707 * 15 14 13 19 19 H 1.09008 * 110.75224 * 308.77417 * 18 15 14 20 20 C 1.55310 * 110.84938 * 72.24591 * 18 15 14 21 21 C 1.55203 * 100.82418 * 152.18128 * 20 18 15 22 22 O 1.43641 * 105.26211 * 323.81702 * 21 20 18 23 23 C 1.43238 * 109.97200 * 24.28459 * 22 21 20 24 24 H 0.97004 * 119.99367 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.12650 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.87054 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.74721 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.88167 * 180.25380 * 13 12 11 29 29 H 1.09004 * 111.12067 * 270.24525 * 20 18 15 30 30 H 1.08992 * 111.12444 * 34.40227 * 20 18 15 31 31 H 1.09005 * 110.36436 * 204.79652 * 21 20 18 32 32 H 1.09004 * 110.12868 * 82.71659 * 21 20 18 33 33 H 1.08997 * 109.83327 * 238.77594 * 23 22 21 34 34 H 1.09000 * 109.90129 * 117.84816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0462 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4399 0.7000 7 6 2.0078 -1.2120 0.0005 8 1 3.0681 -1.2237 -0.2048 9 6 1.3267 -2.4215 0.2698 10 6 0.1779 -2.4221 1.0829 11 6 -0.4773 -3.6050 1.3378 12 6 -0.0101 -4.7929 0.7967 13 6 1.1172 -4.8034 -0.0098 14 6 1.7919 -3.6331 -0.2736 15 6 3.0205 -3.6484 -1.1460 16 1 3.0614 -2.7303 -1.7322 17 9 2.9672 -4.7496 -2.0072 18 6 4.2689 -3.7483 -0.2671 19 1 4.2530 -2.9884 0.5143 20 6 4.4009 -5.1691 0.3462 21 6 5.9396 -5.2683 0.5232 22 8 6.4956 -4.5824 -0.6098 23 6 5.5512 -3.6335 -1.1190 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1884 -1.4977 1.5043 26 1 -1.3588 -3.6079 1.9618 27 1 -0.5309 -5.7166 1.0017 28 1 1.4699 -5.7340 -0.4294 29 1 3.8869 -5.2322 1.3053 30 1 4.0362 -5.9301 -0.3436 31 1 6.2546 -6.3118 0.5259 32 1 6.2431 -4.7784 1.4485 33 1 5.3245 -3.8599 -2.1608 34 1 5.9587 -2.6256 -1.0400 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260552827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:40 Heat of formation + Delta-G solvation = -103.908884 kcal Electronic energy + Delta-G solvation = -18606.164519 eV Core-core repulsion = 15609.769716 eV Total energy + Delta-G solvation = -2996.394804 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.59972 -40.27987 -39.33175 -35.52731 -34.51275 -31.90538 -31.19746 -30.36917 -27.47424 -26.21958 -23.44919 -22.74168 -22.20816 -21.00424 -19.19454 -17.86380 -17.49473 -17.23761 -16.65651 -16.55573 -15.88148 -15.71893 -15.24302 -14.84952 -14.57245 -14.35914 -14.17695 -13.61732 -13.34556 -13.07612 -12.84597 -12.79064 -12.73834 -12.40609 -12.20148 -12.04610 -11.73819 -11.64856 -11.38913 -11.07109 -10.97178 -10.49119 -9.28510 -9.25048 -8.61381 -6.37514 0.92223 1.07626 1.40440 1.50231 1.54598 2.20375 2.75458 2.90280 3.38412 3.62663 3.78277 3.86899 4.06711 4.20381 4.30849 4.31922 4.41998 4.55410 4.66349 4.69864 4.76904 4.85779 4.89761 5.02608 5.04710 5.19225 5.26570 5.34562 5.50418 5.68694 5.97255 5.98876 6.10713 6.16730 6.35165 6.66951 6.92670 7.01532 8.34956 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.009208 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.389470 B = 3040.030541 C = 4098.308070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.036 3.964 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.489 4.489 8 H 0.086 0.914 9 C 0.099 3.901 10 C -0.185 4.185 11 C -0.110 4.110 12 C -0.239 4.239 13 C -0.079 4.079 14 C -0.236 4.236 15 C 0.172 3.828 16 H 0.080 0.920 17 F -0.222 7.222 18 C -0.136 4.136 19 H 0.094 0.906 20 C -0.142 4.142 21 C 0.053 3.947 22 O -0.401 6.401 23 C 0.058 3.942 24 H 0.286 0.714 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -3.796 1.084 7.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.518 4.518 8 H 0.104 0.896 9 C 0.096 3.904 10 C -0.204 4.204 11 C -0.128 4.128 12 C -0.258 4.258 13 C -0.097 4.097 14 C -0.238 4.238 15 C 0.136 3.864 16 H 0.098 0.902 17 F -0.203 7.203 18 C -0.155 4.155 19 H 0.113 0.887 20 C -0.180 4.180 21 C -0.023 4.023 22 O -0.321 6.321 23 C -0.019 4.019 24 H 0.097 0.903 25 H 0.120 0.880 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.921 -3.703 0.966 7.909 hybrid contribution -0.524 0.865 0.024 1.012 sum 6.397 -2.838 0.990 7.068 Atomic orbital electron populations 1.69871 1.08970 1.30373 1.36277 1.26708 0.95436 1.04378 0.91358 0.85305 0.79320 0.76387 0.79447 1.18883 1.19646 1.17786 1.19808 0.96884 0.91209 1.43909 0.89585 1.17625 0.91748 0.92118 0.88873 1.21350 0.99864 0.96855 1.02376 1.21011 0.98907 0.93228 0.99673 1.20733 1.00809 0.97348 1.06874 1.20578 0.95387 0.96530 0.97239 1.20069 1.01641 0.94683 1.07361 1.19780 0.93187 0.85349 0.88119 0.90246 1.92687 1.97492 1.57728 1.72385 1.23210 0.93752 0.99852 0.98658 0.88744 1.23218 0.96957 0.95724 1.02060 1.23544 0.91487 0.98233 0.89019 1.88313 1.41016 1.54957 1.47845 1.23178 0.87645 0.93376 0.97662 0.90309 0.87953 0.87324 0.86616 0.87291 0.89743 0.90478 0.87885 0.91179 0.91214 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.90 10.91 21.83 0.24 -41.66 16 2 C 0.04 1.72 5.22 85.26 0.45 2.16 16 3 Si 0.97 36.35 29.58 68.60 2.03 38.38 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.49 -24.08 8.09 23.46 0.19 -23.89 16 8 H 0.09 3.95 6.37 -2.91 -0.02 3.94 16 9 C 0.10 4.97 5.55 -21.29 -0.12 4.85 16 10 C -0.18 -9.40 8.67 22.73 0.20 -9.20 16 11 C -0.11 -4.97 10.02 22.22 0.22 -4.75 16 12 C -0.24 -10.11 10.05 22.46 0.23 -9.88 16 13 C -0.08 -3.40 9.13 22.22 0.20 -3.20 16 14 C -0.24 -10.69 4.92 -19.41 -0.10 -10.78 16 15 C 0.17 6.79 2.52 29.85 0.08 6.86 16 16 H 0.08 3.28 7.07 -2.39 -0.02 3.26 16 17 F -0.22 -8.74 14.60 44.97 0.66 -8.09 16 18 C -0.14 -4.58 2.64 -9.53 -0.03 -4.61 16 19 H 0.09 3.38 7.63 -2.38 -0.02 3.36 16 20 C -0.14 -4.25 6.09 32.14 0.20 -4.05 16 21 C 0.05 1.37 7.78 72.74 0.57 1.93 16 22 O -0.40 -12.34 11.36 -148.98 -1.69 -14.03 16 23 C 0.06 1.76 7.35 72.45 0.53 2.30 16 24 H 0.29 13.21 8.30 -92.71 -0.77 12.45 16 25 H 0.10 5.46 6.25 -2.91 -0.02 5.44 16 26 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.11 4.26 7.48 -2.91 -0.02 4.24 16 29 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.08 2.39 7.13 -2.39 -0.02 2.37 16 31 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.13 7.56 -2.39 -0.02 2.11 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -54.93 282.26 4.94 -49.98 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 1.10 Total: 27.68 kcal Atomic # 6 Polarization: -54.87 SS G_CDS: 2.61 Total: -52.25 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.24 Total: -41.66 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.69 Total: -14.03 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 0.66 Total: -8.09 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -54.93 4.94 -49.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.926 kcal (2) G-P(sol) polarization free energy of solvation -54.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds