Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 119.99624 * 2 1 4 4 H 1.48503 * 109.46739 * 270.00549 * 3 2 1 5 5 H 1.48494 * 109.47019 * 30.00069 * 3 2 1 6 6 H 1.48490 * 109.47041 * 150.00220 * 3 2 1 7 7 C 1.39940 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00093 * 195.41195 * 7 2 1 9 9 C 1.41401 * 119.99996 * 15.40452 * 7 2 1 10 10 C 1.40736 * 120.24264 * 25.06966 * 9 7 2 11 11 C 1.37593 * 119.74399 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24783 * 0.02562 * 11 10 9 13 13 C 1.38608 * 120.50450 * 359.97438 * 12 11 10 14 14 C 1.37637 * 120.24697 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.12944 * 179.97438 * 14 13 12 16 16 H 1.08993 * 109.47386 * 214.99666 * 15 14 13 17 17 F 1.39895 * 109.46942 * 335.00435 * 15 14 13 18 18 C 1.52999 * 109.46736 * 95.00031 * 15 14 13 19 19 H 1.09000 * 110.80609 * 63.62752 * 18 15 14 20 20 C 1.54812 * 110.90942 * 299.99967 * 18 15 14 21 21 C 1.54091 * 104.19102 * 220.92254 * 20 18 15 22 22 O 1.43747 * 107.29293 * 357.97155 * 21 20 18 23 23 C 1.44375 * 106.97559 * 26.50982 * 22 21 20 24 24 H 0.96996 * 120.00665 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.12462 * 0.25597 * 10 9 7 26 26 H 1.07997 * 119.87655 * 179.97438 * 11 10 9 27 27 H 1.08004 * 119.74691 * 180.02562 * 12 11 10 28 28 H 1.08003 * 119.87813 * 179.97438 * 13 12 11 29 29 H 1.09000 * 110.49001 * 339.60331 * 20 18 15 30 30 H 1.09005 * 110.48519 * 102.11354 * 20 18 15 31 31 H 1.08998 * 109.88288 * 117.39566 * 21 20 18 32 32 H 1.08999 * 109.88239 * 238.39704 * 21 20 18 33 33 H 1.08999 * 110.62154 * 201.43667 * 23 22 21 34 34 H 1.08998 * 110.61484 * 78.44322 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4895 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.6999 7 6 2.0081 -1.2119 -0.0005 8 1 3.0589 -1.2287 0.2480 9 6 1.3392 -2.4143 -0.3264 10 6 0.1858 -2.3880 -1.1323 11 6 -0.4566 -3.5642 -1.4435 12 6 0.0281 -4.7723 -0.9657 13 6 1.1632 -4.8103 -0.1711 14 6 1.8219 -3.6460 0.1528 15 6 3.0555 -3.6903 1.0174 16 1 3.0835 -2.8075 1.6560 17 9 3.0264 -4.8407 1.8128 18 6 4.3005 -3.7163 0.1285 19 1 4.3788 -2.7991 -0.4552 20 6 4.2947 -4.9594 -0.7943 21 6 5.7563 -5.4473 -0.7799 22 8 6.5057 -4.5281 0.0324 23 6 5.5791 -3.9456 0.9740 24 1 -0.4851 0.8399 0.0004 25 1 -0.1909 -1.4484 -1.5089 26 1 -1.3421 -3.5464 -2.0615 27 1 -0.4823 -5.6909 -1.2153 28 1 1.5316 -5.7569 0.1959 29 1 3.6321 -5.7275 -0.3955 30 1 3.9925 -4.6831 -1.8045 31 1 5.8087 -6.4482 -0.3515 32 1 6.1537 -5.4575 -1.7948 33 1 5.9627 -2.9989 1.3543 34 1 5.3790 -4.6365 1.7929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260552831.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = -103.243608 kcal Electronic energy + Delta-G solvation = -18640.829311 eV Core-core repulsion = 15644.463356 eV Total energy + Delta-G solvation = -2996.365955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.59287 -40.29040 -39.31355 -35.55102 -34.51388 -31.87116 -31.14731 -30.33054 -27.47258 -26.24954 -23.52824 -22.79028 -22.18520 -20.83444 -19.18086 -17.89926 -17.46695 -17.24838 -16.72277 -16.44235 -16.00717 -15.66668 -15.14817 -14.82103 -14.56001 -14.45930 -14.22427 -13.53976 -13.39979 -13.09899 -12.83948 -12.76132 -12.72106 -12.36983 -12.13749 -11.95969 -11.72643 -11.62055 -11.35879 -11.06788 -11.01256 -10.59395 -9.30207 -9.25020 -8.63028 -6.36410 0.92812 1.08434 1.40243 1.51641 1.53991 2.19777 2.74154 2.94957 3.46736 3.67683 3.82521 3.86481 4.07470 4.20599 4.29590 4.33004 4.42739 4.54891 4.64374 4.68853 4.78326 4.85552 4.89689 5.03726 5.12105 5.18507 5.25013 5.36325 5.52070 5.68565 5.86635 5.97849 6.11495 6.18003 6.35129 6.67549 6.92318 7.02360 8.32551 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.009162 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.282889 B = 3055.275122 C = 4058.283673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.487 4.487 8 H 0.087 0.913 9 C 0.098 3.902 10 C -0.190 4.190 11 C -0.109 4.109 12 C -0.242 4.242 13 C -0.078 4.078 14 C -0.237 4.237 15 C 0.171 3.829 16 H 0.080 0.920 17 F -0.221 7.221 18 C -0.135 4.135 19 H 0.092 0.908 20 C -0.141 4.141 21 C 0.049 3.951 22 O -0.395 6.395 23 C 0.053 3.947 24 H 0.287 0.713 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -4.043 -0.429 7.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.516 4.516 8 H 0.105 0.895 9 C 0.096 3.904 10 C -0.209 4.209 11 C -0.128 4.128 12 C -0.261 4.261 13 C -0.096 4.096 14 C -0.239 4.239 15 C 0.135 3.865 16 H 0.098 0.902 17 F -0.202 7.202 18 C -0.154 4.154 19 H 0.110 0.890 20 C -0.179 4.179 21 C -0.027 4.027 22 O -0.314 6.314 23 C -0.023 4.023 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.862 -3.883 -0.407 7.895 hybrid contribution -0.552 0.723 -0.019 0.910 sum 6.310 -3.160 -0.426 7.070 Atomic orbital electron populations 1.69875 1.09018 1.30467 1.35599 1.26722 0.95394 1.04436 0.91294 0.85300 0.79370 0.76334 0.79434 1.18960 1.19726 1.17666 1.19849 0.97752 0.91541 1.42464 0.89547 1.17624 0.91646 0.92150 0.89016 1.21375 0.99962 0.97024 1.02578 1.20998 0.98919 0.93209 0.99655 1.20712 1.00744 0.96989 1.07693 1.20565 0.95344 0.96540 0.97118 1.20034 1.01659 0.94213 1.07981 1.19770 0.93203 0.83840 0.89640 0.90185 1.92684 1.97536 1.54016 1.76001 1.23200 0.94197 1.00608 0.97443 0.88997 1.22844 0.97498 0.97158 1.00396 1.23258 0.90040 0.93054 0.96354 1.88786 1.33818 1.59726 1.49090 1.23642 0.87527 0.99267 0.91880 0.90218 0.87814 0.87447 0.86728 0.87270 0.90716 0.90955 0.91274 0.88466 0.87647 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.57 10.86 21.83 0.24 -41.34 16 2 C 0.04 1.76 5.19 85.25 0.44 2.20 16 3 Si 0.97 36.42 29.59 68.60 2.03 38.45 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 7 C -0.49 -24.09 8.17 23.46 0.19 -23.90 16 8 H 0.09 4.00 6.07 -2.91 -0.02 3.99 16 9 C 0.10 4.96 5.58 -21.29 -0.12 4.84 16 10 C -0.19 -9.71 8.68 22.73 0.20 -9.51 16 11 C -0.11 -5.00 10.02 22.22 0.22 -4.77 16 12 C -0.24 -10.33 10.05 22.46 0.23 -10.10 16 13 C -0.08 -3.33 8.39 22.22 0.19 -3.14 16 14 C -0.24 -10.75 4.69 -19.40 -0.09 -10.84 16 15 C 0.17 6.73 2.70 29.85 0.08 6.81 16 16 H 0.08 3.27 7.05 -2.39 -0.02 3.25 16 17 F -0.22 -8.50 14.57 44.97 0.66 -7.85 16 18 C -0.14 -4.62 2.98 -9.49 -0.03 -4.64 16 19 H 0.09 3.36 7.36 -2.39 -0.02 3.34 16 20 C -0.14 -4.39 5.69 31.58 0.18 -4.21 16 21 C 0.05 1.31 7.70 72.35 0.56 1.87 16 22 O -0.39 -12.09 11.52 -148.98 -1.72 -13.81 16 23 C 0.05 1.58 7.13 72.66 0.52 2.10 16 24 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 25 H 0.10 5.57 6.12 -2.91 -0.02 5.55 16 26 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 28 H 0.11 4.25 6.93 -2.91 -0.02 4.23 16 29 H 0.07 2.39 6.18 -2.39 -0.01 2.38 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.07 1.99 7.29 -2.39 -0.02 1.98 16 Total: -1.00 -54.78 278.80 4.87 -49.90 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 1.10 Total: 27.95 kcal Atomic # 6 Polarization: -55.88 SS G_CDS: 2.56 Total: -53.31 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.24 Total: -41.34 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.72 Total: -13.81 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.66 Total: -7.85 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -54.78 4.87 -49.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552831.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.341 kcal (2) G-P(sol) polarization free energy of solvation -54.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds