Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00064 * 2 1 4 4 C 1.50700 * 109.47051 * 269.99902 * 3 2 1 5 5 H 1.08003 * 119.99945 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00172 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99531 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47083 * 90.00171 * 8 6 4 10 10 H 1.48499 * 109.46833 * 209.99588 * 8 6 4 11 11 H 1.48497 * 109.47464 * 329.99536 * 8 6 4 12 12 C 1.39005 * 120.00100 * 179.97438 * 2 1 3 13 13 C 1.38694 * 119.90714 * 5.00503 * 12 2 1 14 14 C 1.39444 * 119.86965 * 179.97438 * 13 12 2 15 15 C 1.37865 * 118.20951 * 0.02562 * 14 13 12 16 16 C 1.39347 * 118.63165 * 0.02562 * 15 14 13 17 17 N 1.31412 * 121.78147 * 0.26297 * 16 15 14 18 18 C 1.52213 * 115.50985 * 179.97438 * 15 14 13 19 19 S 1.83243 * 103.55185 * 17.50241 * 18 15 14 20 20 C 1.52082 * 126.07081 * 180.02562 * 14 13 12 21 21 H 1.08998 * 109.47071 * 269.99835 * 1 2 3 22 22 H 1.08994 * 109.47025 * 30.00361 * 1 2 3 23 23 H 1.09004 * 109.46633 * 150.00094 * 1 2 3 24 24 H 1.08994 * 109.47164 * 29.99967 * 3 2 1 25 25 H 1.09010 * 109.46993 * 149.99841 * 3 2 1 26 26 H 0.96997 * 119.99840 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.06049 * 359.97438 * 13 12 2 28 28 H 1.08002 * 119.10681 * 179.97438 * 16 15 14 29 29 H 1.09000 * 110.60443 * 136.01759 * 18 15 14 30 30 H 1.09000 * 110.61044 * 258.83054 * 18 15 14 31 31 H 1.08999 * 110.61589 * 44.00400 * 20 14 13 32 32 H 1.09002 * 110.75159 * 281.07969 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.3093 4.2594 -3.9011 10 1 4.6995 4.1987 -3.4963 11 1 3.5560 2.2189 -4.3046 12 6 2.1600 -1.2038 0.0005 13 6 1.4686 -2.4016 -0.1038 14 6 2.1667 -3.6087 -0.1037 15 6 3.5406 -3.5670 0.0023 16 6 4.1650 -2.3254 0.1046 17 7 3.4797 -1.2042 0.1074 18 6 4.2399 -4.9190 -0.0033 19 16 2.9741 -6.0543 -0.6863 20 6 1.5549 -4.9969 -0.2109 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8901 -0.5139 24 1 1.6085 2.0283 0.5138 25 1 3.1500 1.1383 0.5139 26 1 4.0311 4.4434 -0.8505 27 1 0.3917 -2.3993 -0.1850 28 1 5.2410 -2.2838 0.1884 29 1 5.1194 -4.8933 -0.6466 30 1 4.5154 -5.2126 1.0096 31 1 0.7845 -5.0183 -0.9817 32 1 1.1452 -5.3135 0.7483 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260556037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = 47.568003 kcal Electronic energy + Delta-G solvation = -15747.364670 eV Core-core repulsion = 13220.211230 eV Total energy + Delta-G solvation = -2527.153440 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.02581 -36.42976 -33.96784 -32.73917 -31.12385 -28.55586 -27.52992 -26.93138 -24.65895 -22.67310 -22.05221 -19.87312 -17.08838 -16.64299 -16.37710 -15.50164 -15.09606 -14.83930 -14.43192 -14.14512 -14.00016 -13.45032 -13.23728 -12.76664 -12.54032 -12.17918 -12.01848 -11.64452 -11.44587 -11.18147 -10.95535 -10.60710 -10.56127 -10.13353 -9.84577 -9.19465 -9.03319 -8.81683 -8.44845 -7.79342 -6.83610 -6.03810 -4.11288 1.59656 1.70060 1.83088 2.21644 3.27836 3.34687 3.38973 3.75028 4.28968 4.42520 4.45270 4.87538 5.01159 5.16186 5.25823 5.27265 5.33536 5.44683 5.48883 5.67323 5.78878 5.91047 6.06386 6.16006 6.19870 6.44369 6.82636 7.06677 7.44043 7.77946 7.91243 8.20053 8.22228 8.76767 8.95015 9.53385 11.01111 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.031296 B = 0.005479 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.462938 B = 5108.795152 C = 5430.090653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.588 5.588 3 C 0.251 3.749 4 C -0.525 4.525 5 H 0.055 0.945 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.425 3.575 13 C -0.249 4.249 14 C -0.011 4.011 15 C -0.246 4.246 16 C 0.184 3.816 17 N -0.511 5.511 18 C -0.003 4.003 19 S -0.282 6.282 20 C -0.028 4.028 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.029 0.971 25 H 0.052 0.948 26 H 0.263 0.737 27 H 0.128 0.872 28 H 0.150 0.850 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -14.421 2.799 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.295 5.295 3 C 0.132 3.868 4 C -0.564 4.564 5 H 0.073 0.927 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.189 3.811 13 C -0.277 4.277 14 C -0.020 4.020 15 C -0.253 4.253 16 C 0.018 3.982 17 N -0.226 5.226 18 C -0.152 4.152 19 S -0.055 6.055 20 C -0.175 4.175 21 H 0.062 0.938 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.167 0.833 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.969 -14.287 2.341 14.779 hybrid contribution -0.327 0.728 -0.556 0.973 sum -3.296 -13.559 1.785 14.067 Atomic orbital electron populations 1.21619 0.80217 1.02586 1.00370 1.47083 1.04708 1.04491 1.73207 1.19355 0.92621 0.77504 0.97356 1.21451 1.36404 1.06248 0.92324 0.92669 1.24908 0.95383 0.96363 0.97283 1.69925 1.38433 1.14315 1.30661 0.86530 0.77704 0.78594 0.84793 1.20672 1.21053 1.19978 1.18224 0.88216 0.86116 0.88506 1.20951 1.00610 0.90468 1.15636 1.20215 0.93063 0.93282 0.95416 1.20864 0.93818 0.95158 1.15502 1.22185 0.99499 0.85312 0.91171 1.67398 1.06912 1.29224 1.19059 1.22576 0.98165 0.91100 1.03355 1.87624 1.04292 1.33369 1.80193 1.22838 0.97912 0.91656 1.05128 0.93811 0.90571 0.92341 0.95318 0.93048 0.92725 0.85436 0.83282 0.87820 0.88733 0.87294 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 10.28 59.85 0.62 2.19 16 2 N -0.59 -12.52 2.97 -183.25 -0.54 -13.06 16 3 C 0.25 6.43 5.23 -5.20 -0.03 6.40 16 4 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 5 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.43 8.66 7.35 -155.18 -1.14 7.52 16 13 C -0.25 -4.16 9.22 -38.96 -0.36 -4.52 16 14 C -0.01 -0.17 5.94 -103.63 -0.62 -0.78 16 15 C -0.25 -3.70 5.94 -103.60 -0.62 -4.32 16 16 C 0.18 3.13 11.09 -17.32 -0.19 2.94 16 17 N -0.51 -10.83 9.09 -12.33 -0.11 -10.94 16 18 C 0.00 -0.04 7.32 36.76 0.27 0.23 16 19 S -0.28 -3.59 23.43 -107.50 -2.52 -6.11 16 20 C -0.03 -0.33 7.33 36.69 0.27 -0.06 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 23 H 0.06 0.82 5.99 -51.93 -0.31 0.51 16 24 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 25 H 0.05 1.45 7.31 -51.92 -0.38 1.07 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.13 1.82 6.00 -52.49 -0.32 1.51 16 28 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -31.01 284.52 -9.32 -40.33 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -3.93 Total: -2.05 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.22 Total: -3.70 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.08 Total: -49.41 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.52 Total: -6.11 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.01 -9.32 -40.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.898 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds