Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00064 * 2 1 4 4 C 1.50700 * 109.47051 * 269.99902 * 3 2 1 5 5 H 1.08003 * 119.99945 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00172 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99531 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47083 * 90.00171 * 8 6 4 10 10 H 1.48499 * 109.46833 * 209.99588 * 8 6 4 11 11 H 1.48497 * 109.47464 * 329.99536 * 8 6 4 12 12 C 1.39005 * 120.00100 * 179.97438 * 2 1 3 13 13 C 1.38694 * 119.90714 * 5.00503 * 12 2 1 14 14 C 1.39444 * 119.86965 * 179.97438 * 13 12 2 15 15 C 1.37865 * 118.20951 * 0.02562 * 14 13 12 16 16 C 1.39347 * 118.63165 * 0.02562 * 15 14 13 17 17 N 1.31412 * 121.78147 * 0.26297 * 16 15 14 18 18 C 1.52213 * 115.50985 * 179.97438 * 15 14 13 19 19 S 1.83243 * 103.55185 * 17.50241 * 18 15 14 20 20 C 1.52082 * 126.07081 * 180.02562 * 14 13 12 21 21 H 1.08998 * 109.47071 * 269.99835 * 1 2 3 22 22 H 1.08994 * 109.47025 * 30.00361 * 1 2 3 23 23 H 1.09004 * 109.46633 * 150.00094 * 1 2 3 24 24 H 1.08994 * 109.47164 * 29.99967 * 3 2 1 25 25 H 1.09010 * 109.46993 * 149.99841 * 3 2 1 26 26 H 0.96997 * 119.99840 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.06049 * 359.97438 * 13 12 2 28 28 H 1.08002 * 119.10681 * 179.97438 * 16 15 14 29 29 H 1.09000 * 110.60443 * 136.01759 * 18 15 14 30 30 H 1.09000 * 110.61044 * 258.83054 * 18 15 14 31 31 H 1.08999 * 110.61589 * 44.00400 * 20 14 13 32 32 H 1.09002 * 110.75159 * 281.07969 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.3093 4.2594 -3.9011 10 1 4.6995 4.1987 -3.4963 11 1 3.5560 2.2189 -4.3046 12 6 2.1600 -1.2038 0.0005 13 6 1.4686 -2.4016 -0.1038 14 6 2.1667 -3.6087 -0.1037 15 6 3.5406 -3.5670 0.0023 16 6 4.1650 -2.3254 0.1046 17 7 3.4797 -1.2042 0.1074 18 6 4.2399 -4.9190 -0.0033 19 16 2.9741 -6.0543 -0.6863 20 6 1.5549 -4.9969 -0.2109 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8901 -0.5139 24 1 1.6085 2.0283 0.5138 25 1 3.1500 1.1383 0.5139 26 1 4.0311 4.4434 -0.8505 27 1 0.3917 -2.3993 -0.1850 28 1 5.2410 -2.2838 0.1884 29 1 5.1194 -4.8933 -0.6466 30 1 4.5154 -5.2126 1.0096 31 1 0.7845 -5.0183 -0.9817 32 1 1.1452 -5.3135 0.7483 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260556037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = 30.008603 kcal Electronic energy + Delta-G solvation = -15748.126103 eV Core-core repulsion = 13220.211230 eV Total energy + Delta-G solvation = -2527.914873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36581 -37.90661 -35.33683 -34.73145 -32.43648 -30.11868 -28.82188 -28.32946 -26.23501 -24.35312 -23.35125 -21.31392 -18.66952 -18.23946 -17.96842 -16.80066 -16.44926 -16.26384 -15.86414 -15.50914 -15.36509 -14.83758 -14.36172 -14.12472 -13.99311 -13.74854 -13.28046 -13.11344 -12.94461 -12.77728 -12.63762 -12.42174 -12.15652 -11.80567 -11.55559 -10.62802 -10.57471 -10.44951 -10.19020 -8.75760 -8.46687 -8.04012 -6.33630 0.34082 0.41156 0.84647 1.21245 1.36069 1.37889 1.48324 2.26655 2.43047 2.95924 3.09468 3.34086 3.72210 3.75616 4.12727 4.18979 4.33180 4.42052 4.45273 4.52381 4.63941 4.70206 4.80287 4.86356 4.93478 5.08568 5.20056 5.30410 5.61396 5.75326 6.08001 6.24715 6.57718 6.79972 7.33586 7.43990 8.86628 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.031296 B = 0.005479 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.462938 B = 5108.795152 C = 5430.090653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.608 5.608 3 C 0.271 3.729 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.012 3.988 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.393 3.607 13 C -0.241 4.241 14 C -0.015 4.015 15 C -0.234 4.234 16 C 0.166 3.834 17 N -0.562 5.562 18 C 0.001 3.999 19 S -0.295 6.295 20 C -0.020 4.020 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.011 0.989 25 H 0.016 0.984 26 H 0.266 0.734 27 H 0.153 0.847 28 H 0.169 0.831 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -16.590 2.041 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.318 5.318 3 C 0.150 3.850 4 C -0.574 4.574 5 H 0.063 0.937 6 C -0.187 4.187 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.159 3.841 13 C -0.268 4.268 14 C -0.024 4.024 15 C -0.241 4.241 16 C 0.002 3.998 17 N -0.278 5.278 18 C -0.147 4.147 19 S -0.067 6.067 20 C -0.167 4.167 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.029 0.971 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.170 0.830 28 H 0.186 0.814 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.585 -16.512 1.587 16.971 hybrid contribution -0.090 1.245 -0.273 1.278 sum -3.675 -15.266 1.314 15.757 Atomic orbital electron populations 1.21779 0.77706 1.03398 1.01820 1.46922 1.06152 1.03381 1.75321 1.18721 0.91298 0.79428 0.95570 1.21675 1.36373 1.06303 0.93091 0.93688 1.25749 0.95079 0.96424 1.01433 1.70039 1.39111 1.14769 1.32764 0.85499 0.78034 0.78095 0.79650 1.19266 1.20445 1.20101 1.18548 0.88436 0.86806 0.90269 1.21117 1.01782 0.89605 1.14339 1.20628 0.93267 0.94384 0.94128 1.21217 0.94362 0.95795 1.12730 1.22549 1.00430 0.85347 0.91455 1.67302 1.08154 1.31709 1.20675 1.22669 0.98156 0.88847 1.05057 1.87760 1.04938 1.33526 1.80515 1.22929 0.97714 0.89002 1.07043 0.91982 0.91608 0.89604 0.97127 0.96616 0.92478 0.82987 0.81415 0.86378 0.86538 0.85587 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.09 10.28 127.77 1.31 4.40 16 2 N -0.61 -26.50 2.97 -733.68 -2.18 -28.68 16 3 C 0.27 14.59 5.23 85.63 0.45 15.04 16 4 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 5 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 6 C 0.01 0.69 5.46 84.66 0.46 1.16 16 7 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.39 16.13 7.35 132.96 0.98 17.11 16 13 C -0.24 -7.64 9.22 22.67 0.21 -7.43 16 14 C -0.02 -0.42 5.94 -19.22 -0.11 -0.53 16 15 C -0.23 -6.55 5.94 -19.20 -0.11 -6.67 16 16 C 0.17 5.60 11.09 85.02 0.94 6.54 16 17 N -0.56 -24.44 9.09 -192.93 -1.75 -26.19 16 18 C 0.00 0.02 7.32 71.72 0.53 0.54 16 19 S -0.29 -6.51 23.43 -56.49 -1.32 -7.84 16 20 C -0.02 -0.39 7.33 71.68 0.53 0.14 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.07 2.21 8.07 -2.39 -0.02 2.20 16 23 H 0.09 2.24 5.99 -2.38 -0.01 2.22 16 24 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 25 H 0.02 0.94 7.31 -2.38 -0.02 0.93 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.15 3.90 6.00 -2.91 -0.02 3.89 16 28 H 0.17 4.69 8.06 -2.91 -0.02 4.66 16 29 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -68.92 284.52 3.59 -65.33 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.12 Total: 5.99 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.42 Total: -0.25 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -3.65 Total: -110.20 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.32 Total: -7.84 kcal Total: -68.92 3.59 -65.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.337 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds