Wall clock time and date at job start Mon Mar 30 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35979 * 116.99891 * 2 1 4 4 C 1.38698 * 119.98658 * 0.21763 * 3 2 1 5 5 C 1.38219 * 120.08513 * 180.25043 * 4 3 2 6 6 C 1.38524 * 120.09814 * 359.78464 * 5 4 3 7 7 C 1.39254 * 119.91693 * 359.97438 * 6 5 4 8 8 C 1.38531 * 119.88374 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.00318 * 179.97438 * 8 7 6 10 10 H 1.08991 * 109.47151 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.46838 * 239.99729 * 9 8 7 12 12 C 1.50699 * 109.46952 * 120.00357 * 9 8 7 13 13 H 1.08000 * 120.00329 * 5.47243 * 12 9 8 14 14 C 1.37874 * 119.99912 * 185.47623 * 12 9 8 15 15 N 1.31516 * 120.00164 * 9.60319 * 14 12 9 16 16 Si 1.86797 * 120.00175 * 189.60083 * 14 12 9 17 17 H 1.48499 * 109.47393 * 84.99523 * 16 14 12 18 18 H 1.48497 * 109.47278 * 204.99886 * 16 14 12 19 19 H 1.48505 * 109.47066 * 324.99447 * 16 14 12 20 20 O 1.36514 * 108.64440 * 179.97438 * 7 6 5 21 21 C 1.43980 * 105.49849 * 17.29637 * 20 7 6 22 22 O 1.36602 * 131.46246 * 179.97438 * 6 5 4 23 23 H 1.08994 * 109.46817 * 299.99191 * 1 2 3 24 24 H 1.08997 * 109.47404 * 59.99969 * 1 2 3 25 25 H 1.09003 * 109.46424 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.95673 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.94827 * 179.77019 * 5 4 3 28 28 H 1.08998 * 109.46978 * 62.65798 * 11 9 8 29 29 H 1.08995 * 109.46889 * 182.65772 * 11 9 8 30 30 H 1.08997 * 109.47244 * 302.65748 * 11 9 8 31 31 H 0.96994 * 120.00220 * 179.97438 * 15 14 12 32 32 H 1.09007 * 110.57021 * 91.41667 * 21 20 7 33 33 H 1.08993 * 110.57477 * 214.28718 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2906 2.3746 0.0046 5 6 1.9160 3.6073 -0.0007 6 6 3.2990 3.6845 -0.0060 7 6 4.0598 2.5182 -0.0055 8 6 3.4309 1.2839 0.0008 9 6 4.2516 0.0199 0.0008 10 1 5.3113 0.2748 -0.0051 11 6 3.9188 -0.8042 -1.2447 12 6 3.9347 -0.7848 1.2349 13 1 3.1492 -0.4629 1.9026 14 6 4.6477 -1.9319 1.5118 15 7 5.7216 -2.2239 0.8110 16 14 4.0884 -3.0714 2.8822 17 1 3.0603 -4.0069 2.3595 18 1 5.2505 -3.8453 3.3878 19 1 3.5096 -2.2679 3.9888 20 8 5.3816 2.8593 -0.0119 21 6 5.4248 4.2394 0.3963 22 8 4.1450 4.7571 -0.0121 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 0.2122 2.3170 0.0085 27 1 1.3253 4.5115 -0.0008 28 1 4.1918 -0.2406 -2.1368 29 1 4.4771 -1.7399 -1.2210 30 1 2.8503 -1.0189 -1.2634 31 1 6.2234 -3.0308 1.0060 32 1 5.5412 4.3156 1.4774 33 1 6.2315 4.7649 -0.1147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260564046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:46 Heat of formation + Delta-G solvation = -71.503432 kcal Electronic energy + Delta-G solvation = -18839.162205 eV Core-core repulsion = 15831.799817 eV Total energy + Delta-G solvation = -3007.362387 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.62989 -39.20509 -36.02985 -35.78756 -34.08128 -31.35475 -28.93412 -28.32487 -26.73179 -25.29373 -24.97204 -22.75545 -21.94882 -19.98518 -18.08707 -17.18002 -16.93398 -16.55344 -15.77009 -15.19041 -14.94613 -14.64049 -14.50897 -13.77502 -13.08853 -12.88879 -12.76241 -12.48656 -12.37487 -12.02634 -11.72056 -11.47251 -11.19712 -10.97893 -10.78282 -10.66647 -10.28826 -10.07521 -9.74941 -9.26064 -8.97349 -8.23812 -7.72712 -7.23571 -5.92067 -3.91467 1.70051 1.85126 3.16029 3.36864 3.42546 3.45502 3.74085 4.13087 4.24026 4.53263 5.02329 5.06548 5.21643 5.29316 5.38852 5.43493 5.49713 5.52517 5.73512 5.81842 6.02646 6.40279 6.52235 6.63078 6.73235 6.77907 6.96550 7.27377 7.29774 7.60048 7.77792 8.00523 8.05302 8.10380 8.48940 9.08190 9.68503 11.17197 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.009016 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.855679 B = 3104.945910 C = 3897.687500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.274 6.274 3 C 0.147 3.853 4 C -0.212 4.212 5 C -0.086 4.086 6 C -0.016 4.016 7 C 0.061 3.939 8 C -0.048 4.048 9 C 0.081 3.919 10 H 0.045 0.955 11 C -0.127 4.127 12 C -0.490 4.490 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.276 1.276 20 O -0.298 6.298 21 C 0.213 3.787 22 O -0.318 6.318 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.007 0.993 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.259 0.741 32 H 0.077 0.923 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 9.426 -1.707 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.186 6.186 3 C 0.101 3.899 4 C -0.231 4.231 5 C -0.105 4.105 6 C -0.060 4.060 7 C 0.017 3.983 8 C -0.049 4.049 9 C 0.063 3.937 10 H 0.063 0.937 11 C -0.185 4.185 12 C -0.528 4.528 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.215 1.215 19 H -0.201 1.201 20 O -0.213 6.213 21 C 0.100 3.900 22 O -0.235 6.235 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.025 9.194 -1.825 11.713 hybrid contribution -0.309 -0.330 0.872 0.983 sum -7.334 8.863 -0.953 11.544 Atomic orbital electron populations 1.23025 0.80429 1.03454 1.00389 1.86468 1.19134 1.25150 1.87814 1.18303 0.90836 0.84294 0.96496 1.20865 0.99675 0.91204 1.11334 1.19475 0.89237 0.97790 1.03955 1.19617 0.92475 0.84606 1.09291 1.19205 0.82202 0.93545 1.03369 1.18969 0.91151 0.94438 1.00364 1.17724 0.94341 0.86560 0.95079 0.93665 1.21749 1.00487 1.01001 0.95278 1.20932 1.17513 1.07609 1.06769 0.92582 1.24905 0.94557 0.97987 0.96445 1.69975 1.15944 1.25699 1.41340 0.86665 0.78144 0.81154 0.82346 1.20627 1.21531 1.20138 1.87412 1.22140 1.27199 1.84578 1.25493 0.86393 0.78359 0.99735 1.87260 1.19634 1.30940 1.85709 0.93256 0.93407 0.88650 0.84918 0.85583 0.97361 0.91492 0.93621 0.93114 0.90545 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.27 -5.41 7.04 -19.67 -0.14 -5.54 16 3 C 0.15 2.96 6.13 -39.26 -0.24 2.72 16 4 C -0.21 -3.49 9.03 -39.42 -0.36 -3.84 16 5 C -0.09 -1.41 10.05 -39.48 -0.40 -1.80 16 6 C -0.02 -0.31 7.15 -39.10 -0.28 -0.59 16 7 C 0.06 1.32 6.82 -39.10 -0.27 1.05 16 8 C -0.05 -1.10 4.76 -104.36 -0.50 -1.60 16 9 C 0.08 2.15 2.25 -92.92 -0.21 1.94 16 10 H 0.05 1.33 7.63 -51.93 -0.40 0.93 16 11 C -0.13 -3.19 8.87 37.16 0.33 -2.86 16 12 C -0.49 -13.74 7.49 -34.44 -0.26 -14.00 16 13 H 0.06 1.58 7.38 -52.49 -0.39 1.19 16 14 C 0.06 1.75 5.18 -17.82 -0.09 1.66 16 15 N -0.89 -26.17 12.17 55.43 0.67 -25.50 16 16 Si 0.89 21.74 29.55 -169.99 -5.02 16.72 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 O -0.30 -6.14 11.07 -45.73 -0.51 -6.65 16 21 C 0.21 3.24 8.89 101.05 0.90 4.14 16 22 O -0.32 -5.47 11.41 -46.02 -0.52 -6.00 16 23 H 0.05 0.59 7.65 -51.93 -0.40 0.20 16 24 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 25 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.13 1.71 6.29 -52.49 -0.33 1.38 16 27 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 1.80 6.85 -51.93 -0.36 1.45 16 30 H 0.04 1.08 6.04 -51.93 -0.31 0.77 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 277.44 15.07 4.18 4.18 Total: -1.00 -32.13 277.44 -5.54 -37.67 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -3.83 Total: -3.00 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.38 Total: -11.88 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.67 Total: -25.50 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.17 Total: -18.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.13 -5.54 -37.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.831 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds