Wall clock time and date at job start Mon Mar 30 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35979 * 116.99891 * 2 1 4 4 C 1.38698 * 119.98658 * 0.21763 * 3 2 1 5 5 C 1.38219 * 120.08513 * 180.25043 * 4 3 2 6 6 C 1.38524 * 120.09814 * 359.78464 * 5 4 3 7 7 C 1.39254 * 119.91693 * 359.97438 * 6 5 4 8 8 C 1.38531 * 119.88374 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.00318 * 179.97438 * 8 7 6 10 10 H 1.08991 * 109.47151 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.46838 * 239.99729 * 9 8 7 12 12 C 1.50699 * 109.46952 * 120.00357 * 9 8 7 13 13 H 1.08000 * 120.00329 * 5.47243 * 12 9 8 14 14 C 1.37874 * 119.99912 * 185.47623 * 12 9 8 15 15 N 1.31516 * 120.00164 * 9.60319 * 14 12 9 16 16 Si 1.86797 * 120.00175 * 189.60083 * 14 12 9 17 17 H 1.48499 * 109.47393 * 84.99523 * 16 14 12 18 18 H 1.48497 * 109.47278 * 204.99886 * 16 14 12 19 19 H 1.48505 * 109.47066 * 324.99447 * 16 14 12 20 20 O 1.36514 * 108.64440 * 179.97438 * 7 6 5 21 21 C 1.43980 * 105.49849 * 17.29637 * 20 7 6 22 22 O 1.36602 * 131.46246 * 179.97438 * 6 5 4 23 23 H 1.08994 * 109.46817 * 299.99191 * 1 2 3 24 24 H 1.08997 * 109.47404 * 59.99969 * 1 2 3 25 25 H 1.09003 * 109.46424 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.95673 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.94827 * 179.77019 * 5 4 3 28 28 H 1.08998 * 109.46978 * 62.65798 * 11 9 8 29 29 H 1.08995 * 109.46889 * 182.65772 * 11 9 8 30 30 H 1.08997 * 109.47244 * 302.65748 * 11 9 8 31 31 H 0.96994 * 120.00220 * 179.97438 * 15 14 12 32 32 H 1.09007 * 110.57021 * 91.41667 * 21 20 7 33 33 H 1.08993 * 110.57477 * 214.28718 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2906 2.3746 0.0046 5 6 1.9160 3.6073 -0.0007 6 6 3.2990 3.6845 -0.0060 7 6 4.0598 2.5182 -0.0055 8 6 3.4309 1.2839 0.0008 9 6 4.2516 0.0199 0.0008 10 1 5.3113 0.2748 -0.0051 11 6 3.9188 -0.8042 -1.2447 12 6 3.9347 -0.7848 1.2349 13 1 3.1492 -0.4629 1.9026 14 6 4.6477 -1.9319 1.5118 15 7 5.7216 -2.2239 0.8110 16 14 4.0884 -3.0714 2.8822 17 1 3.0603 -4.0069 2.3595 18 1 5.2505 -3.8453 3.3878 19 1 3.5096 -2.2679 3.9888 20 8 5.3816 2.8593 -0.0119 21 6 5.4248 4.2394 0.3963 22 8 4.1450 4.7571 -0.0121 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 0.2122 2.3170 0.0085 27 1 1.3253 4.5115 -0.0008 28 1 4.1918 -0.2406 -2.1368 29 1 4.4771 -1.7399 -1.2210 30 1 2.8503 -1.0189 -1.2634 31 1 6.2234 -3.0308 1.0060 32 1 5.5412 4.3156 1.4774 33 1 6.2315 4.7649 -0.1147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:46 Heat of formation + Delta-G solvation = -92.776093 kcal Electronic energy + Delta-G solvation = -18840.084657 eV Core-core repulsion = 15831.799817 eV Total energy + Delta-G solvation = -3008.284839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.01252 -40.59807 -37.48552 -37.19346 -35.94244 -33.29204 -30.33998 -29.92755 -27.89935 -27.12899 -26.55913 -24.41718 -23.33973 -21.75838 -19.43526 -18.70357 -18.36569 -18.17854 -17.42294 -16.60594 -16.49085 -16.19814 -15.91571 -15.21480 -14.77256 -14.66278 -14.12984 -13.90464 -13.72049 -13.56742 -13.45376 -13.12367 -12.83241 -12.74064 -12.38713 -12.26714 -12.14921 -12.04480 -11.08665 -11.06181 -11.02065 -10.41021 -9.30976 -8.62210 -8.06832 -6.13840 0.26987 0.41693 1.41423 1.43286 1.52271 1.83525 2.45688 2.48543 2.73426 2.96151 3.23243 3.63453 3.90639 4.03463 4.07446 4.18136 4.37391 4.49972 4.56477 4.62126 4.83781 4.86466 4.94514 4.97580 5.21037 5.27560 5.29463 5.36036 5.40077 5.63165 5.93836 5.98935 6.22788 6.36617 6.71828 6.91406 7.49460 9.01893 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.009016 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.855679 B = 3104.945910 C = 3897.687500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.310 6.310 3 C 0.139 3.861 4 C -0.194 4.194 5 C -0.070 4.070 6 C -0.024 4.024 7 C 0.036 3.964 8 C -0.095 4.095 9 C 0.086 3.914 10 H -0.004 1.004 11 C -0.113 4.113 12 C -0.496 4.496 13 H 0.050 0.950 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.270 1.270 20 O -0.333 6.333 21 C 0.205 3.795 22 O -0.318 6.318 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.178 0.822 27 H 0.169 0.831 28 H 0.015 0.985 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.259 0.741 32 H 0.093 0.907 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 10.881 -1.147 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.092 3.908 4 C -0.213 4.213 5 C -0.088 4.088 6 C -0.068 4.068 7 C -0.008 4.008 8 C -0.096 4.096 9 C 0.067 3.933 10 H 0.014 0.986 11 C -0.171 4.171 12 C -0.534 4.534 13 H 0.069 0.931 14 C -0.188 4.188 15 N -0.565 5.565 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.194 1.194 20 O -0.250 6.250 21 C 0.094 3.906 22 O -0.235 6.235 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.125 0.875 26 H 0.195 0.805 27 H 0.187 0.813 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.704 10.663 -1.263 14.472 hybrid contribution 0.487 -0.691 0.679 1.084 sum -9.216 9.972 -0.584 13.591 Atomic orbital electron populations 1.23394 0.77321 1.05130 1.02458 1.86382 1.22463 1.25606 1.87844 1.18408 0.90024 0.85775 0.96546 1.21294 1.01528 0.89646 1.08787 1.20053 0.88431 0.99419 1.00886 1.19887 0.93428 0.83877 1.09574 1.19460 0.82899 0.94309 1.04158 1.18849 0.92656 0.93408 1.04718 1.17438 0.92275 0.88624 0.94930 0.98555 1.21562 1.00592 0.99523 0.95429 1.21144 1.17003 1.07983 1.07267 0.93138 1.25727 0.94549 0.99520 0.99043 1.70117 1.17059 1.26165 1.43168 0.85637 0.77813 0.79116 0.79500 1.19602 1.21275 1.19440 1.87355 1.22560 1.29991 1.85086 1.26008 0.86796 0.76426 1.01385 1.87235 1.20007 1.30383 1.85865 0.91407 0.90856 0.87464 0.80509 0.81312 0.96605 0.94311 0.92482 0.93163 0.88932 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.31 -11.86 7.04 -93.31 -0.66 -12.52 16 3 C 0.14 5.43 6.13 22.48 0.14 5.56 16 4 C -0.19 -5.65 9.03 22.38 0.20 -5.45 16 5 C -0.07 -2.01 10.05 22.33 0.22 -1.78 16 6 C -0.02 -0.85 7.15 22.58 0.16 -0.69 16 7 C 0.04 1.58 6.82 22.58 0.15 1.73 16 8 C -0.09 -4.48 4.76 -19.70 -0.09 -4.57 16 9 C 0.09 4.76 2.25 -12.28 -0.03 4.73 16 10 H 0.00 -0.24 7.63 -2.39 -0.02 -0.26 16 11 C -0.11 -5.93 8.87 71.98 0.64 -5.29 16 12 C -0.50 -28.71 7.49 25.60 0.19 -28.52 16 13 H 0.05 2.91 7.38 -2.91 -0.02 2.89 16 14 C 0.01 0.53 5.18 84.65 0.44 0.97 16 15 N -0.92 -56.56 12.17 21.45 0.26 -56.30 16 16 Si 0.95 45.27 29.55 68.60 2.03 47.29 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 O -0.33 -14.22 11.07 -76.21 -0.84 -15.06 16 21 C 0.20 6.07 8.89 113.37 1.01 7.08 16 22 O -0.32 -10.33 11.41 -77.25 -0.88 -11.21 16 23 H 0.07 1.36 7.65 -2.39 -0.02 1.34 16 24 H 0.07 1.37 7.67 -2.39 -0.02 1.35 16 25 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.18 3.51 6.29 -2.91 -0.02 3.49 16 27 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 28 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.04 2.18 6.85 -2.39 -0.02 2.17 16 30 H 0.06 2.79 6.04 -2.39 -0.01 2.77 16 31 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.16 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -73.71 277.44 5.18 -68.53 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.12 Total: 4.11 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 4.15 Total: -24.85 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.26 Total: -56.30 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.38 Total: -38.79 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.71 5.18 -68.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.241 kcal (2) G-P(sol) polarization free energy of solvation -73.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds