Wall clock time and date at job start Mon Mar 30 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35975 * 117.00327 * 2 1 4 4 C 1.38698 * 119.98661 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.08739 * 180.02562 * 4 3 2 6 6 C 1.38530 * 120.09830 * 0.02562 * 5 4 3 7 7 C 1.39257 * 119.91819 * 359.74321 * 6 5 4 8 8 C 1.38535 * 119.87891 * 0.53633 * 7 6 5 9 9 C 1.50697 * 120.00482 * 179.71703 * 8 7 6 10 10 H 1.09005 * 109.47301 * 359.72950 * 9 8 7 11 11 C 1.53008 * 109.46987 * 119.72288 * 9 8 7 12 12 C 1.50696 * 109.47297 * 239.72520 * 9 8 7 13 13 H 1.07998 * 120.00099 * 354.24808 * 12 9 8 14 14 C 1.37882 * 120.00135 * 174.25698 * 12 9 8 15 15 N 1.31513 * 120.00131 * 158.27236 * 14 12 9 16 16 Si 1.86799 * 119.99895 * 338.26763 * 14 12 9 17 17 H 1.48500 * 109.46971 * 270.00390 * 16 14 12 18 18 H 1.48502 * 109.46925 * 30.00376 * 16 14 12 19 19 H 1.48498 * 109.47063 * 150.00400 * 16 14 12 20 20 O 1.36508 * 108.64602 * 179.84423 * 7 6 5 21 21 C 1.43984 * 105.56652 * 343.06727 * 20 7 6 22 22 O 1.36608 * 131.46599 * 180.02562 * 6 5 4 23 23 H 1.09004 * 109.46648 * 300.00238 * 1 2 3 24 24 H 1.08999 * 109.46708 * 60.00081 * 1 2 3 25 25 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.08009 * 119.95608 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.95338 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.46891 * 54.77677 * 11 9 8 29 29 H 1.09002 * 109.47004 * 174.77390 * 11 9 8 30 30 H 1.08997 * 109.47311 * 294.77414 * 11 9 8 31 31 H 0.97001 * 120.00141 * 354.93180 * 15 14 12 32 32 H 1.08993 * 110.57026 * 268.35898 * 21 20 7 33 33 H 1.09003 * 110.56733 * 145.48848 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2908 2.3746 -0.0005 5 6 1.9162 3.6071 -0.0011 6 6 3.2993 3.6843 -0.0016 7 6 4.0601 2.5180 0.0038 8 6 3.4311 1.2837 -0.0015 9 6 4.2516 0.0197 -0.0022 10 1 5.3115 0.2745 -0.0028 11 6 3.9252 -0.8008 1.2474 12 6 3.9284 -0.7885 -1.2324 13 1 3.1365 -0.4708 -1.8945 14 6 4.6435 -1.9335 -1.5126 15 7 4.1288 -2.8548 -2.2973 16 14 6.3437 -2.1762 -0.7777 17 1 7.3650 -1.6115 -1.6959 18 1 6.4196 -1.4832 0.5335 19 1 6.5978 -3.6267 -0.5864 20 8 5.3819 2.8590 -0.0015 21 6 5.4235 4.2378 -0.4141 22 8 4.1454 4.7568 -0.0017 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2123 2.3171 -0.0005 27 1 1.3257 4.5114 -0.0019 28 1 2.8506 -0.9766 1.2962 29 1 4.4479 -1.7562 1.2014 30 1 4.2446 -0.2543 2.1347 31 1 3.2184 -2.7640 -2.6196 32 1 5.5356 4.3106 -1.4958 33 1 6.2324 4.7647 0.0921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260564056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:48 Heat of formation + Delta-G solvation = -70.236922 kcal Electronic energy + Delta-G solvation = -18905.163396 eV Core-core repulsion = 15897.855928 eV Total energy + Delta-G solvation = -3007.307467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73248 -39.28822 -36.13416 -35.89256 -34.21292 -31.59916 -29.05941 -28.68852 -26.79485 -25.39129 -24.60548 -22.74952 -22.05708 -19.78301 -18.17958 -17.57050 -17.02604 -16.99050 -16.24563 -15.30381 -15.01355 -14.73516 -14.15385 -13.75801 -13.33866 -12.93384 -12.81165 -12.64275 -12.49429 -12.13951 -12.01065 -11.69155 -11.21926 -11.10442 -11.04378 -10.44514 -10.21493 -9.87969 -9.63619 -9.58084 -8.89340 -8.11740 -7.85304 -7.32465 -6.32343 -3.90053 1.60324 1.75850 3.05522 3.50337 3.52775 3.66176 3.69037 4.05136 4.14873 4.61217 4.92131 4.97311 5.12721 5.21972 5.30556 5.38017 5.44903 5.48590 5.63200 5.79982 5.91024 6.27115 6.41543 6.46223 6.53980 6.58313 6.71048 6.92731 7.00834 7.26206 7.48653 7.67192 7.94765 8.23745 8.51840 9.04370 9.72191 11.03772 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.010188 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.258779 B = 2747.769169 C = 3794.615979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.272 6.272 3 C 0.150 3.850 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.016 4.016 7 C 0.059 3.941 8 C -0.043 4.043 9 C 0.057 3.943 10 H 0.033 0.967 11 C -0.136 4.136 12 C -0.577 4.577 13 H 0.058 0.942 14 C 0.035 3.965 15 N -0.905 5.905 16 Si 1.036 2.964 17 H -0.287 1.287 18 H -0.274 1.274 19 H -0.288 1.288 20 O -0.302 6.302 21 C 0.213 3.787 22 O -0.317 6.317 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.096 0.904 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.017 0.983 31 H 0.268 0.732 32 H 0.078 0.922 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 11.494 5.347 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.184 6.184 3 C 0.104 3.896 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.059 4.059 7 C 0.015 3.985 8 C -0.045 4.045 9 C 0.038 3.962 10 H 0.051 0.949 11 C -0.194 4.194 12 C -0.615 4.615 13 H 0.076 0.924 14 C -0.169 4.169 15 N -0.539 5.539 16 Si 0.864 3.136 17 H -0.214 1.214 18 H -0.200 1.200 19 H -0.214 1.214 20 O -0.217 6.217 21 C 0.101 3.899 22 O -0.234 6.234 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.152 0.848 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.727 10.367 5.454 12.027 hybrid contribution -1.405 1.402 -0.216 1.997 sum -4.132 11.769 5.238 13.528 Atomic orbital electron populations 1.23035 0.80272 1.03574 1.00351 1.86488 1.19269 1.24990 1.87630 1.18283 0.90772 0.84447 0.96128 1.20881 0.99785 0.91153 1.11190 1.19501 0.89246 0.97844 1.03593 1.19587 0.92457 0.84526 1.09350 1.19189 0.82195 0.93581 1.03570 1.18637 0.91093 0.93643 1.01103 1.18069 0.93795 0.88274 0.96080 0.94921 1.22123 1.01642 0.99330 0.96267 1.21768 1.21312 1.09907 1.08508 0.92362 1.25618 1.03605 0.91704 0.95998 1.70809 1.17011 1.32254 1.33824 0.84147 0.76517 0.76000 0.76941 1.21414 1.19956 1.21394 1.87362 1.22116 1.27611 1.84654 1.25508 0.86509 0.78143 0.99761 1.87272 1.19703 1.30816 1.85611 0.93401 0.93227 0.88553 0.84788 0.85438 0.92344 0.93439 0.96363 0.92228 0.90431 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 101.05 0.99 1.32 16 2 O -0.27 -5.49 7.03 -19.66 -0.14 -5.63 16 3 C 0.15 3.03 6.12 -39.26 -0.24 2.79 16 4 C -0.21 -3.47 9.03 -39.42 -0.36 -3.83 16 5 C -0.08 -1.34 10.05 -39.48 -0.40 -1.74 16 6 C -0.02 -0.29 7.15 -39.10 -0.28 -0.57 16 7 C 0.06 1.24 6.83 -39.09 -0.27 0.97 16 8 C -0.04 -0.98 4.76 -104.36 -0.50 -1.48 16 9 C 0.06 1.43 1.93 -92.92 -0.18 1.25 16 10 H 0.03 0.85 6.06 -51.93 -0.31 0.54 16 11 C -0.14 -3.18 8.50 37.16 0.32 -2.87 16 12 C -0.58 -16.43 7.79 -34.44 -0.27 -16.70 16 13 H 0.06 1.79 7.57 -52.49 -0.40 1.40 16 14 C 0.04 1.03 5.24 -17.82 -0.09 0.94 16 15 N -0.91 -27.93 13.70 55.43 0.76 -27.17 16 16 Si 1.04 25.91 26.37 -169.99 -4.48 21.42 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.44 5.94 56.52 0.34 -6.11 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 O -0.30 -5.92 11.07 -45.72 -0.51 -6.43 16 21 C 0.21 3.10 8.89 101.05 0.90 4.00 16 22 O -0.32 -5.29 11.41 -46.04 -0.53 -5.81 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.13 1.74 6.29 -52.48 -0.33 1.41 16 27 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.06 1.34 6.01 -51.93 -0.31 1.02 16 29 H 0.05 1.13 5.73 -51.93 -0.30 0.83 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 272.16 15.07 4.10 4.10 Total: -1.00 -33.02 272.16 -4.94 -37.96 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.78 Total: -2.54 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.37 Total: -15.90 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.76 Total: -27.17 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.17 Total: -17.87 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -4.48 Total: 21.42 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.02 -4.94 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.276 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds