Wall clock time and date at job start Mon Mar 30 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35975 * 117.00327 * 2 1 4 4 C 1.38698 * 119.98661 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.08739 * 180.02562 * 4 3 2 6 6 C 1.38530 * 120.09830 * 0.02562 * 5 4 3 7 7 C 1.39257 * 119.91819 * 359.74321 * 6 5 4 8 8 C 1.38535 * 119.87891 * 0.53633 * 7 6 5 9 9 C 1.50697 * 120.00482 * 179.71703 * 8 7 6 10 10 H 1.09005 * 109.47301 * 359.72950 * 9 8 7 11 11 C 1.53008 * 109.46987 * 119.72288 * 9 8 7 12 12 C 1.50696 * 109.47297 * 239.72520 * 9 8 7 13 13 H 1.07998 * 120.00099 * 354.24808 * 12 9 8 14 14 C 1.37882 * 120.00135 * 174.25698 * 12 9 8 15 15 N 1.31513 * 120.00131 * 158.27236 * 14 12 9 16 16 Si 1.86799 * 119.99895 * 338.26763 * 14 12 9 17 17 H 1.48500 * 109.46971 * 270.00390 * 16 14 12 18 18 H 1.48502 * 109.46925 * 30.00376 * 16 14 12 19 19 H 1.48498 * 109.47063 * 150.00400 * 16 14 12 20 20 O 1.36508 * 108.64602 * 179.84423 * 7 6 5 21 21 C 1.43984 * 105.56652 * 343.06727 * 20 7 6 22 22 O 1.36608 * 131.46599 * 180.02562 * 6 5 4 23 23 H 1.09004 * 109.46648 * 300.00238 * 1 2 3 24 24 H 1.08999 * 109.46708 * 60.00081 * 1 2 3 25 25 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.08009 * 119.95608 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.95338 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.46891 * 54.77677 * 11 9 8 29 29 H 1.09002 * 109.47004 * 174.77390 * 11 9 8 30 30 H 1.08997 * 109.47311 * 294.77414 * 11 9 8 31 31 H 0.97001 * 120.00141 * 354.93180 * 15 14 12 32 32 H 1.08993 * 110.57026 * 268.35898 * 21 20 7 33 33 H 1.09003 * 110.56733 * 145.48848 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2908 2.3746 -0.0005 5 6 1.9162 3.6071 -0.0011 6 6 3.2993 3.6843 -0.0016 7 6 4.0601 2.5180 0.0038 8 6 3.4311 1.2837 -0.0015 9 6 4.2516 0.0197 -0.0022 10 1 5.3115 0.2745 -0.0028 11 6 3.9252 -0.8008 1.2474 12 6 3.9284 -0.7885 -1.2324 13 1 3.1365 -0.4708 -1.8945 14 6 4.6435 -1.9335 -1.5126 15 7 4.1288 -2.8548 -2.2973 16 14 6.3437 -2.1762 -0.7777 17 1 7.3650 -1.6115 -1.6959 18 1 6.4196 -1.4832 0.5335 19 1 6.5978 -3.6267 -0.5864 20 8 5.3819 2.8590 -0.0015 21 6 5.4235 4.2378 -0.4141 22 8 4.1454 4.7568 -0.0017 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2123 2.3171 -0.0005 27 1 1.3257 4.5114 -0.0019 28 1 2.8506 -0.9766 1.2962 29 1 4.4479 -1.7562 1.2014 30 1 4.2446 -0.2543 2.1347 31 1 3.2184 -2.7640 -2.6196 32 1 5.5356 4.3106 -1.4958 33 1 6.2324 4.7647 0.0921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:48 Heat of formation + Delta-G solvation = -93.198439 kcal Electronic energy + Delta-G solvation = -18906.159082 eV Core-core repulsion = 15897.855928 eV Total energy + Delta-G solvation = -3008.303153 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.06658 -40.68447 -37.58780 -37.24596 -36.03699 -33.63126 -30.49834 -30.15528 -28.00245 -26.69686 -26.59506 -24.36981 -23.42648 -21.55516 -19.67397 -19.43167 -18.46321 -18.37766 -17.60654 -16.65101 -16.33370 -16.02465 -15.95440 -15.25336 -15.14415 -14.60693 -14.29392 -14.04732 -13.86315 -13.61931 -13.60413 -13.33126 -12.97758 -12.63246 -12.37489 -12.34100 -12.03556 -11.54063 -11.33320 -11.12838 -11.02947 -10.32902 -9.44213 -8.72521 -8.57654 -6.20311 0.19696 0.34543 1.47574 1.51370 1.72416 1.75916 2.42782 2.52659 2.65474 2.89003 3.10730 3.55271 3.88071 3.96141 4.01794 4.13055 4.29417 4.38194 4.45500 4.52634 4.68894 4.72828 4.76387 4.85477 5.05810 5.15189 5.18825 5.22188 5.30322 5.41343 5.77421 6.10428 6.14611 6.18582 6.62342 6.70624 7.48520 8.71478 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.010188 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.258779 B = 2747.769169 C = 3794.615979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.312 6.312 3 C 0.135 3.865 4 C -0.197 4.197 5 C -0.069 4.069 6 C -0.022 4.022 7 C 0.041 3.959 8 C -0.092 4.092 9 C 0.058 3.942 10 H 0.020 0.980 11 C -0.130 4.130 12 C -0.566 4.566 13 H 0.021 0.979 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 1.074 2.926 17 H -0.277 1.277 18 H -0.253 1.253 19 H -0.284 1.284 20 O -0.328 6.328 21 C 0.204 3.796 22 O -0.317 6.317 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.174 0.826 27 H 0.169 0.831 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.253 0.747 32 H 0.093 0.907 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 13.768 6.516 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.225 6.225 3 C 0.089 3.911 4 C -0.216 4.216 5 C -0.087 4.087 6 C -0.066 4.066 7 C -0.004 4.004 8 C -0.093 4.093 9 C 0.039 3.961 10 H 0.038 0.962 11 C -0.187 4.187 12 C -0.604 4.604 13 H 0.039 0.961 14 C -0.213 4.213 15 N -0.572 5.572 16 Si 0.897 3.103 17 H -0.203 1.203 18 H -0.177 1.177 19 H -0.210 1.210 20 O -0.245 6.245 21 C 0.094 3.906 22 O -0.234 6.234 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.191 0.809 27 H 0.187 0.813 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.242 12.668 6.627 14.659 hybrid contribution -1.361 0.823 -0.616 1.706 sum -4.603 13.491 6.011 15.470 Atomic orbital electron populations 1.23353 0.77447 1.04892 1.02381 1.86396 1.22394 1.25856 1.87819 1.18487 0.90403 0.85669 0.96531 1.21281 1.01483 0.89815 1.08978 1.20044 0.88703 0.99242 1.00704 1.19847 0.93332 0.84052 1.09375 1.19367 0.83086 0.94021 1.03918 1.18606 0.92353 0.93129 1.05243 1.17886 0.93602 0.89699 0.94899 0.96230 1.21993 1.01587 0.98746 0.96401 1.21827 1.19473 1.09990 1.09121 0.96061 1.26879 1.06664 0.91713 0.96068 1.70927 1.16493 1.33659 1.36169 0.83652 0.72752 0.76411 0.77522 1.20274 1.17723 1.20969 1.87307 1.21995 1.30193 1.85024 1.26057 0.86832 0.76336 1.01401 1.87254 1.20171 1.30244 1.85727 0.90415 0.91881 0.87874 0.80872 0.81323 0.92377 0.94415 0.94317 0.93783 0.88946 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 9.81 113.37 1.11 1.47 16 2 O -0.31 -12.57 7.03 -93.27 -0.66 -13.22 16 3 C 0.14 5.36 6.12 22.48 0.14 5.50 16 4 C -0.20 -5.87 9.03 22.37 0.20 -5.67 16 5 C -0.07 -1.96 10.05 22.33 0.22 -1.74 16 6 C -0.02 -0.76 7.15 22.58 0.16 -0.60 16 7 C 0.04 1.67 6.83 22.59 0.15 1.83 16 8 C -0.09 -4.18 4.76 -19.70 -0.09 -4.27 16 9 C 0.06 2.98 1.93 -12.29 -0.02 2.96 16 10 H 0.02 1.04 6.06 -2.38 -0.01 1.02 16 11 C -0.13 -6.09 8.50 71.98 0.61 -5.47 16 12 C -0.57 -33.35 7.79 25.60 0.20 -33.15 16 13 H 0.02 1.37 7.57 -2.91 -0.02 1.35 16 14 C -0.02 -0.91 5.24 84.66 0.44 -0.46 16 15 N -0.94 -59.82 13.70 21.45 0.29 -59.52 16 16 Si 1.07 52.88 26.37 68.60 1.81 54.69 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.25 -11.49 5.94 99.48 0.59 -10.90 16 19 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 20 O -0.33 -12.67 11.07 -76.14 -0.84 -13.51 16 21 C 0.20 5.50 8.89 113.37 1.01 6.51 16 22 O -0.32 -9.70 11.41 -77.32 -0.88 -10.58 16 23 H 0.08 1.57 7.66 -2.38 -0.02 1.55 16 24 H 0.06 1.47 7.66 -2.39 -0.02 1.45 16 25 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.17 3.67 6.29 -2.91 -0.02 3.66 16 27 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.06 2.69 6.01 -2.39 -0.01 2.67 16 29 H 0.04 1.78 5.73 -2.39 -0.01 1.77 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.25 16.37 8.73 -92.71 -0.81 15.57 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.17 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -74.72 272.16 4.84 -69.89 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 0.98 Total: 5.37 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 4.14 Total: -33.11 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.29 Total: -59.52 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -2.38 Total: -37.32 kcal Atomic # 14 Polarization: 52.88 SS G_CDS: 1.81 Total: 54.69 kcal Total: -74.72 4.84 -69.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.311 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds