Wall clock time and date at job start Mon Mar 30 2020 06:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99581 * 2 1 4 4 H 1.48497 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46896 * 299.99341 * 3 2 1 6 6 H 1.48496 * 109.47567 * 59.99719 * 3 2 1 7 7 C 1.37869 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00121 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.53835 * 57.37888 * 9 7 2 11 11 C 1.54269 * 110.48161 * 294.76957 * 9 7 2 12 12 C 1.53878 * 106.59498 * 217.70789 * 11 9 7 13 13 C 1.54262 * 106.59876 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.59511 * 264.87252 * 13 12 11 15 15 O 1.42896 * 110.48379 * 142.28719 * 13 12 11 16 16 C 1.35905 * 117.00231 * 89.03138 * 15 13 12 17 17 C 1.38767 * 120.04095 * 354.80974 * 16 15 13 18 18 C 1.38133 * 119.99389 * 180.29884 * 17 16 15 19 19 C 1.38258 * 120.07721 * 359.72769 * 18 17 16 20 20 C 1.38474 * 120.08388 * 359.97093 * 19 18 17 21 21 F 1.35097 * 119.99329 * 180.02562 * 20 19 18 22 22 C 1.38379 * 120.00831 * 0.02831 * 20 19 18 23 23 C 1.54887 * 110.48565 * 179.97438 * 9 7 2 24 24 H 0.96997 * 120.00367 * 0.02562 * 1 2 3 25 25 H 1.08996 * 110.03257 * 336.99678 * 11 9 7 26 26 H 1.09004 * 110.02871 * 98.38251 * 11 9 7 27 27 H 1.08994 * 110.03349 * 240.71660 * 12 11 9 28 28 H 1.09005 * 110.02678 * 119.28543 * 12 11 9 29 29 H 1.08002 * 120.00222 * 0.04805 * 17 16 15 30 30 H 1.07999 * 119.96173 * 179.73945 * 18 17 16 31 31 H 1.07997 * 119.95106 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.04440 * 180.02562 * 22 20 19 33 33 H 1.08999 * 110.75391 * 38.30902 * 23 9 7 34 34 H 1.08999 * 110.75883 * 274.93312 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5837 -2.5555 -0.8594 11 6 0.4564 -2.6637 1.3125 12 6 0.5410 -4.1520 1.6939 13 6 1.3847 -4.8398 0.6008 14 1 0.7408 -5.2757 -0.1630 15 8 2.2263 -5.8417 1.1751 16 6 1.7086 -7.0934 1.2854 17 6 0.3827 -7.3288 0.9504 18 6 -0.1442 -8.6002 1.0688 19 6 0.6496 -9.6404 1.5155 20 6 1.9748 -9.4104 1.8448 21 9 2.7489 -10.4282 2.2806 22 6 2.5062 -8.1381 1.7275 23 6 2.2367 -3.6940 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 0.9003 -2.0512 2.0972 26 1 -0.5835 -2.3757 1.1576 27 1 -0.4579 -4.5871 1.7240 28 1 1.0260 -4.2618 2.6639 29 1 -0.2383 -6.5172 0.6010 30 1 -1.1773 -8.7820 0.8119 31 1 0.2356 -10.6337 1.6069 32 1 3.5399 -7.9581 1.9837 33 1 3.0995 -3.4831 0.6324 34 1 2.5501 -3.9363 -1.0149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260584045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:40 Heat of formation + Delta-G solvation = -75.203992 kcal Electronic energy + Delta-G solvation = -17634.412440 eV Core-core repulsion = 14639.262374 eV Total energy + Delta-G solvation = -2995.150066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.98430 -40.12267 -37.73879 -35.82170 -32.41062 -30.84902 -29.77219 -28.30750 -27.25848 -24.16858 -22.91097 -22.38872 -19.87690 -19.33585 -18.37984 -16.67310 -16.36968 -16.20082 -15.86092 -15.66720 -15.01470 -14.53619 -14.34138 -13.86774 -13.78498 -13.04984 -12.58952 -12.46145 -11.97304 -11.89868 -11.75646 -11.28050 -11.09736 -10.86427 -10.57192 -10.35472 -10.21571 -10.00306 -9.66448 -9.29254 -8.93233 -8.82684 -8.44420 -8.20083 -6.06932 -4.09735 1.08696 1.28002 3.27230 3.29918 3.35887 3.40354 3.56975 4.31686 4.41156 4.73177 4.92806 4.98769 5.19407 5.24538 5.29855 5.36834 5.41381 5.62323 5.88866 6.02308 6.03656 6.21478 6.27411 6.38879 6.41435 6.55634 6.61612 6.75293 6.82778 7.09471 7.19003 7.59308 7.63622 7.80753 7.93400 8.37195 8.93093 9.54948 11.03091 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.058335 B = 0.004141 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.873140 B = 6759.773106 C = 7056.218895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.097 4.097 12 C -0.147 4.147 13 C 0.073 3.927 14 H 0.074 0.926 15 O -0.303 6.303 16 C 0.173 3.827 17 C -0.221 4.221 18 C -0.051 4.051 19 C -0.204 4.204 20 C 0.134 3.866 21 F -0.139 7.139 22 C -0.200 4.200 23 C -0.107 4.107 24 H 0.260 0.740 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.071 0.929 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -15.457 2.346 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.053 0.947 11 C -0.135 4.135 12 C -0.184 4.184 13 C 0.018 3.982 14 H 0.092 0.908 15 O -0.215 6.215 16 C 0.126 3.874 17 C -0.240 4.240 18 C -0.069 4.069 19 C -0.223 4.223 20 C 0.115 3.885 21 F -0.118 7.118 22 C -0.219 4.219 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.326 -15.271 2.417 15.464 hybrid contribution 0.277 0.753 0.092 0.808 sum -0.049 -14.517 2.509 14.733 Atomic orbital electron populations 1.69968 1.05910 1.26501 1.50436 1.24976 0.94854 0.99118 0.94976 0.86556 0.80222 0.83794 0.77574 1.19719 1.21035 1.21035 1.21146 0.92958 0.90185 1.50928 0.92358 1.19434 0.92259 0.91255 0.93820 0.94742 1.22084 1.01272 0.90091 1.00050 1.22787 0.98093 0.99412 0.98156 1.23818 0.92862 0.86521 0.95000 0.90842 1.86201 1.43445 1.15285 1.76617 1.18764 0.91209 0.85358 0.92098 1.21508 0.95357 0.99031 1.08077 1.20780 0.99482 0.91392 0.95229 1.20956 0.92753 1.00944 1.07619 1.17280 0.89001 0.83999 0.98211 1.91490 1.74971 1.58206 1.87092 1.20273 1.01771 0.90182 1.09703 1.22747 0.99462 0.93401 0.98886 0.93051 0.92502 0.92318 0.92876 0.91871 0.84309 0.84897 0.84991 0.84133 0.91082 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 12.63 55.43 0.70 -24.21 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.70 8.36 -34.44 -0.29 -13.98 16 8 H 0.06 1.54 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.21 2.72 -90.11 -0.25 0.96 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.10 -2.15 5.60 -25.61 -0.14 -2.29 16 12 C -0.15 -2.66 6.28 -25.61 -0.16 -2.82 16 13 C 0.07 1.28 2.69 -25.07 -0.07 1.21 16 14 H 0.07 1.18 6.27 -51.93 -0.33 0.86 16 15 O -0.30 -5.17 9.85 -19.44 -0.19 -5.36 16 16 C 0.17 2.58 6.66 -39.23 -0.26 2.32 16 17 C -0.22 -2.90 8.87 -39.42 -0.35 -3.25 16 18 C -0.05 -0.56 10.04 -39.61 -0.40 -0.95 16 19 C -0.20 -2.26 10.02 -39.49 -0.40 -2.66 16 20 C 0.13 1.71 7.30 -39.44 -0.29 1.42 16 21 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 22 C -0.20 -2.76 9.97 -39.37 -0.39 -3.15 16 23 C -0.11 -2.16 6.01 -24.74 -0.15 -2.31 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.06 1.36 7.83 -51.93 -0.41 0.95 16 26 H 0.06 1.37 8.06 -51.93 -0.42 0.95 16 27 H 0.05 0.86 7.71 -51.93 -0.40 0.46 16 28 H 0.06 1.13 8.07 -51.93 -0.42 0.72 16 29 H 0.14 1.77 5.53 -52.49 -0.29 1.48 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.07 1.47 8.05 -51.93 -0.42 1.06 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -27.58 288.49 -7.69 -35.27 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.33 Total: -0.28 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.23 Total: -23.90 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.70 Total: -24.21 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.19 Total: -5.36 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.58 -7.69 -35.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.933 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds