Wall clock time and date at job start Mon Mar 30 2020 06:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99581 * 2 1 4 4 H 1.48497 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46896 * 299.99341 * 3 2 1 6 6 H 1.48496 * 109.47567 * 59.99719 * 3 2 1 7 7 C 1.37869 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00121 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.53835 * 57.37888 * 9 7 2 11 11 C 1.54269 * 110.48161 * 294.76957 * 9 7 2 12 12 C 1.53878 * 106.59498 * 217.70789 * 11 9 7 13 13 C 1.54262 * 106.59876 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.59511 * 264.87252 * 13 12 11 15 15 O 1.42896 * 110.48379 * 142.28719 * 13 12 11 16 16 C 1.35905 * 117.00231 * 89.03138 * 15 13 12 17 17 C 1.38767 * 120.04095 * 354.80974 * 16 15 13 18 18 C 1.38133 * 119.99389 * 180.29884 * 17 16 15 19 19 C 1.38258 * 120.07721 * 359.72769 * 18 17 16 20 20 C 1.38474 * 120.08388 * 359.97093 * 19 18 17 21 21 F 1.35097 * 119.99329 * 180.02562 * 20 19 18 22 22 C 1.38379 * 120.00831 * 0.02831 * 20 19 18 23 23 C 1.54887 * 110.48565 * 179.97438 * 9 7 2 24 24 H 0.96997 * 120.00367 * 0.02562 * 1 2 3 25 25 H 1.08996 * 110.03257 * 336.99678 * 11 9 7 26 26 H 1.09004 * 110.02871 * 98.38251 * 11 9 7 27 27 H 1.08994 * 110.03349 * 240.71660 * 12 11 9 28 28 H 1.09005 * 110.02678 * 119.28543 * 12 11 9 29 29 H 1.08002 * 120.00222 * 0.04805 * 17 16 15 30 30 H 1.07999 * 119.96173 * 179.73945 * 18 17 16 31 31 H 1.07997 * 119.95106 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.04440 * 180.02562 * 22 20 19 33 33 H 1.08999 * 110.75391 * 38.30902 * 23 9 7 34 34 H 1.08999 * 110.75883 * 274.93312 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5837 -2.5555 -0.8594 11 6 0.4564 -2.6637 1.3125 12 6 0.5410 -4.1520 1.6939 13 6 1.3847 -4.8398 0.6008 14 1 0.7408 -5.2757 -0.1630 15 8 2.2263 -5.8417 1.1751 16 6 1.7086 -7.0934 1.2854 17 6 0.3827 -7.3288 0.9504 18 6 -0.1442 -8.6002 1.0688 19 6 0.6496 -9.6404 1.5155 20 6 1.9748 -9.4104 1.8448 21 9 2.7489 -10.4282 2.2806 22 6 2.5062 -8.1381 1.7275 23 6 2.2367 -3.6940 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 0.9003 -2.0512 2.0972 26 1 -0.5835 -2.3757 1.1576 27 1 -0.4579 -4.5871 1.7240 28 1 1.0260 -4.2618 2.6639 29 1 -0.2383 -6.5172 0.6010 30 1 -1.1773 -8.7820 0.8119 31 1 0.2356 -10.6337 1.6069 32 1 3.5399 -7.9581 1.9837 33 1 3.0995 -3.4831 0.6324 34 1 2.5501 -3.9363 -1.0149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:40 Heat of formation + Delta-G solvation = -88.573918 kcal Electronic energy + Delta-G solvation = -17634.992203 eV Core-core repulsion = 14639.262374 eV Total energy + Delta-G solvation = -2995.729830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.95671 -41.29871 -39.00682 -37.29077 -34.36488 -31.87538 -30.80149 -30.04250 -28.85913 -26.00976 -23.90968 -23.54932 -21.26442 -21.09812 -19.61427 -18.33038 -17.50235 -17.29632 -17.07878 -16.73323 -16.57331 -16.24731 -15.59865 -15.29048 -14.69820 -14.52032 -14.17972 -13.74409 -13.69068 -13.20666 -12.92724 -12.86947 -12.60998 -12.42443 -12.20105 -12.11330 -11.66710 -11.57092 -11.37150 -11.07642 -10.78563 -10.49694 -9.90436 -9.26296 -8.13921 -6.22685 0.12042 0.31027 1.40452 1.43149 1.53928 2.09854 2.44344 2.60322 3.17821 3.35739 3.70123 3.84462 3.87395 4.00260 4.07725 4.12420 4.26791 4.43027 4.57709 4.75761 4.83882 4.92933 4.98908 5.03528 5.07526 5.10694 5.25375 5.35027 5.37238 5.38928 5.64567 5.76984 5.87473 5.94429 6.35124 6.45294 6.87059 7.44902 8.95645 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.058335 B = 0.004141 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.873140 B = 6759.773106 C = 7056.218895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.042 3.958 10 H 0.013 0.987 11 C -0.088 4.088 12 C -0.135 4.135 13 C 0.088 3.912 14 H 0.092 0.908 15 O -0.318 6.318 16 C 0.146 3.854 17 C -0.225 4.225 18 C -0.043 4.043 19 C -0.192 4.192 20 C 0.124 3.876 21 F -0.141 7.141 22 C -0.210 4.210 23 C -0.103 4.103 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.139 0.861 33 H 0.060 0.940 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 -17.117 2.411 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.024 3.976 10 H 0.031 0.969 11 C -0.126 4.126 12 C -0.173 4.173 13 C 0.032 3.968 14 H 0.110 0.890 15 O -0.232 6.232 16 C 0.099 3.901 17 C -0.244 4.244 18 C -0.061 4.061 19 C -0.210 4.210 20 C 0.105 3.895 21 F -0.120 7.120 22 C -0.230 4.230 23 C -0.140 4.140 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.914 -16.950 2.485 17.156 hybrid contribution 0.455 1.167 0.075 1.255 sum -0.459 -15.783 2.560 15.996 Atomic orbital electron populations 1.70070 1.07103 1.27240 1.51279 1.25706 0.95665 1.02272 0.94777 0.85602 0.79136 0.79918 0.77602 1.19252 1.20548 1.20718 1.21515 0.93022 0.91857 1.50702 0.92895 1.19394 0.92780 0.91850 0.93621 0.96927 1.21852 0.99440 0.92833 0.98494 1.22651 0.99855 0.96382 0.98398 1.23488 0.92104 0.86230 0.94965 0.88981 1.86138 1.43621 1.16204 1.77259 1.18951 0.92397 0.84531 0.94176 1.21673 0.94559 1.00303 1.07868 1.21175 1.01003 0.90165 0.93728 1.21339 0.91778 1.02390 1.05538 1.17438 0.89815 0.83556 0.98701 1.91487 1.75213 1.58097 1.87175 1.20359 1.01916 0.90674 1.10023 1.22560 0.98550 0.93334 0.99597 0.93004 0.95012 0.94111 0.90296 0.91719 0.83904 0.81377 0.82143 0.84307 0.92160 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.32 12.63 21.45 0.27 -52.05 16 2 C 0.01 0.81 5.35 84.65 0.45 1.27 16 3 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.53 -29.02 8.36 25.60 0.21 -28.80 16 8 H 0.05 2.86 7.77 -2.91 -0.02 2.84 16 9 C 0.04 2.05 2.72 -10.46 -0.03 2.02 16 10 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 11 C -0.09 -3.98 5.60 31.32 0.18 -3.80 16 12 C -0.14 -4.77 6.28 31.32 0.20 -4.57 16 13 C 0.09 2.98 2.69 31.67 0.09 3.06 16 14 H 0.09 2.79 6.27 -2.39 -0.01 2.77 16 15 O -0.32 -10.61 9.85 -92.48 -0.91 -11.52 16 16 C 0.15 4.13 6.66 22.50 0.15 4.28 16 17 C -0.23 -5.30 8.87 22.37 0.20 -5.10 16 18 C -0.04 -0.77 10.04 22.25 0.22 -0.55 16 19 C -0.19 -3.55 10.02 22.33 0.22 -3.33 16 20 C 0.12 2.90 7.30 22.36 0.16 3.06 16 21 F -0.14 -3.34 17.27 44.97 0.78 -2.56 16 22 C -0.21 -5.56 9.97 22.41 0.22 -5.34 16 23 C -0.10 -4.15 6.01 31.88 0.19 -3.96 16 24 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 25 H 0.03 1.55 7.83 -2.39 -0.02 1.53 16 26 H 0.04 1.94 8.06 -2.38 -0.02 1.92 16 27 H 0.08 2.38 7.71 -2.39 -0.02 2.37 16 28 H 0.06 2.27 8.07 -2.38 -0.02 2.25 16 29 H 0.14 3.21 5.53 -2.91 -0.02 3.19 16 30 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 31 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 33 H 0.06 2.54 8.05 -2.39 -0.02 2.52 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -59.85 288.49 5.72 -54.13 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.09 Total: 8.50 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 2.47 Total: -41.77 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.27 Total: -52.05 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.91 Total: -11.52 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -59.85 5.72 -54.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.448 kcal (2) G-P(sol) polarization free energy of solvation -59.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds