Wall clock time and date at job start Mon Mar 30 2020 06:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47122 * 240.00115 * 3 2 1 5 5 H 1.48496 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46865 * 120.00471 * 3 2 1 7 7 C 1.37871 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00158 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.01827 * 59.93762 * 9 7 2 11 11 C 1.54268 * 110.03590 * 298.55296 * 9 7 2 12 12 C 1.54887 * 104.31451 * 217.03889 * 11 9 7 13 13 C 1.55233 * 102.58951 * 37.92537 * 12 11 9 14 14 H 1.09006 * 110.58063 * 80.83502 * 13 12 11 15 15 O 1.42899 * 110.46814 * 203.39450 * 13 12 11 16 16 C 1.35894 * 117.00156 * 270.97733 * 15 13 12 17 17 C 1.38771 * 120.04498 * 185.45768 * 16 15 13 18 18 C 1.38135 * 119.99454 * 179.97438 * 17 16 15 19 19 C 1.38247 * 120.08378 * 0.02562 * 18 17 16 20 20 C 1.38473 * 120.08383 * 0.02562 * 19 18 17 21 21 F 1.35106 * 119.99752 * 179.97438 * 20 19 18 22 22 C 1.38391 * 120.00611 * 359.70211 * 20 19 18 23 23 C 1.53870 * 110.03630 * 181.38222 * 9 7 2 24 24 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.48362 * 335.78224 * 11 9 7 26 26 H 1.08996 * 110.48933 * 98.28858 * 11 9 7 27 27 H 1.08999 * 110.75527 * 156.32228 * 12 11 9 28 28 H 1.08999 * 110.75284 * 279.68733 * 12 11 9 29 29 H 1.08004 * 120.00073 * 359.96352 * 17 16 15 30 30 H 1.08001 * 119.95593 * 180.02562 * 18 17 16 31 31 H 1.07994 * 119.95670 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.03933 * 180.28907 * 22 20 19 33 33 H 1.09000 * 110.03563 * 238.56773 * 23 9 7 34 34 H 1.09003 * 110.03425 * 359.95770 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6199 -2.5656 -0.8867 11 6 0.3875 -2.6108 1.2728 12 6 0.4681 -4.1083 1.6600 13 6 1.9416 -4.4652 1.3267 14 1 2.6048 -4.1441 2.1300 15 8 2.0765 -5.8696 1.0997 16 6 2.3401 -6.6471 2.1826 17 6 2.5955 -8.0014 2.0200 18 6 2.8638 -8.7906 3.1214 19 6 2.8779 -8.2332 4.3865 20 6 2.6225 -6.8824 4.5527 21 9 2.6361 -6.3396 5.7899 22 6 2.3587 -6.0873 3.4512 23 6 2.2392 -3.6782 0.0337 24 1 -0.4849 0.8400 0.0004 25 1 0.7981 -1.9885 2.0680 26 1 -0.6432 -2.3264 1.0609 27 1 0.2659 -4.2440 2.7225 28 1 -0.2192 -4.7009 1.0562 29 1 2.5842 -8.4383 1.0323 30 1 3.0629 -9.8444 2.9941 31 1 3.0883 -8.8521 5.2461 32 1 2.1641 -5.0328 3.5798 33 1 2.0877 -4.3177 -0.8359 34 1 3.2638 -3.3065 0.0495 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260584049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:42 Heat of formation + Delta-G solvation = -74.593726 kcal Electronic energy + Delta-G solvation = -17804.129587 eV Core-core repulsion = 14809.005984 eV Total energy + Delta-G solvation = -2995.123603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.91367 -40.07926 -37.75023 -35.82035 -32.34866 -30.71747 -29.89495 -28.30545 -27.16396 -24.19091 -22.69689 -22.45173 -20.02869 -19.07357 -18.52060 -16.63396 -16.48452 -16.20088 -15.77083 -15.66134 -14.82064 -14.47755 -14.22017 -14.13655 -13.42665 -13.20461 -12.52794 -12.42986 -12.10202 -11.78390 -11.52538 -11.37114 -11.09550 -10.82733 -10.66879 -10.28481 -10.21154 -9.87781 -9.66474 -9.37846 -8.93360 -8.81106 -8.41277 -8.16159 -6.05018 -4.08637 1.11586 1.29197 3.29824 3.34970 3.36992 3.42859 3.59359 4.21174 4.40896 4.73394 4.95600 5.01890 5.19980 5.24347 5.36045 5.39292 5.47765 5.67008 5.96749 6.03579 6.12044 6.24282 6.25693 6.38896 6.46119 6.50399 6.63136 6.76936 6.88530 7.10252 7.24190 7.62991 7.67292 7.79835 7.95295 8.38270 8.93740 9.55771 11.04292 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.004793 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.718475 B = 5840.237153 C = 6148.907024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.091 4.091 12 C -0.150 4.150 13 C 0.075 3.925 14 H 0.075 0.925 15 O -0.303 6.303 16 C 0.174 3.826 17 C -0.172 4.172 18 C -0.054 4.054 19 C -0.205 4.205 20 C 0.138 3.862 21 F -0.140 7.140 22 C -0.249 4.249 23 C -0.107 4.107 24 H 0.261 0.739 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.057 0.943 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 -14.674 6.252 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.129 4.129 12 C -0.188 4.188 13 C 0.020 3.980 14 H 0.093 0.907 15 O -0.216 6.216 16 C 0.127 3.873 17 C -0.191 4.191 18 C -0.073 4.073 19 C -0.224 4.224 20 C 0.118 3.882 21 F -0.118 7.118 22 C -0.269 4.269 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.076 0.924 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.681 -14.546 6.077 16.188 hybrid contribution 0.412 1.253 0.506 1.413 sum 4.093 -13.292 6.583 15.388 Atomic orbital electron populations 1.69956 1.05887 1.26682 1.50154 1.24980 0.94854 0.99058 0.95015 0.86690 0.79639 0.83235 0.78640 1.20245 1.21302 1.20290 1.21232 0.92693 0.90412 1.51296 0.92578 1.19217 0.92191 0.91204 0.94495 0.94895 1.22241 1.01403 0.89777 0.99468 1.23210 0.94913 1.00792 0.99884 1.23851 0.97795 0.75635 1.00712 0.90734 1.86195 1.83856 1.20834 1.30711 1.18860 0.91418 0.91121 0.85942 1.20541 1.07108 0.91177 1.00282 1.20742 0.96041 0.99618 0.90853 1.20955 1.08986 0.93451 0.99006 1.17437 0.99774 0.91697 0.79271 1.91498 1.93844 1.86446 1.40026 1.21377 1.11685 1.02082 0.91732 1.22417 1.01670 0.96700 0.93715 0.92939 0.92569 0.91796 0.92857 0.91421 0.84681 0.84643 0.85017 0.83701 0.92422 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 12.33 55.43 0.68 -24.37 16 2 C 0.06 1.71 5.32 -17.82 -0.09 1.62 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.85 8.38 -34.44 -0.29 -14.13 16 8 H 0.06 1.47 7.33 -52.48 -0.38 1.09 16 9 C 0.05 1.15 2.84 -90.66 -0.26 0.89 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.09 -2.05 5.36 -25.07 -0.13 -2.19 16 12 C -0.15 -2.81 6.40 -24.55 -0.16 -2.97 16 13 C 0.08 1.37 2.69 -24.89 -0.07 1.30 16 14 H 0.07 1.32 6.27 -51.93 -0.33 1.00 16 15 O -0.30 -5.19 9.85 -19.41 -0.19 -5.38 16 16 C 0.17 2.62 6.66 -39.22 -0.26 2.36 16 17 C -0.17 -2.13 9.99 -39.42 -0.39 -2.52 16 18 C -0.05 -0.56 10.04 -39.62 -0.40 -0.96 16 19 C -0.20 -2.31 10.02 -39.49 -0.40 -2.71 16 20 C 0.14 1.88 7.30 -39.44 -0.29 1.60 16 21 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 22 C -0.25 -3.71 8.82 -39.36 -0.35 -4.06 16 23 C -0.11 -2.20 6.21 -25.62 -0.16 -2.35 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.06 1.34 7.85 -51.93 -0.41 0.93 16 26 H 0.06 1.54 7.92 -51.93 -0.41 1.13 16 27 H 0.05 0.91 7.63 -51.93 -0.40 0.52 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.15 2.22 5.49 -52.49 -0.29 1.93 16 33 H 0.06 1.12 8.07 -51.93 -0.42 0.71 16 34 H 0.06 1.33 7.37 -51.93 -0.38 0.95 16 LS Contribution 287.01 15.07 4.33 4.33 Total: -1.00 -27.80 287.01 -7.67 -35.47 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.26 Total: 0.09 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -3.24 Total: -24.13 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.68 Total: -24.37 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.19 Total: -5.38 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.80 -7.67 -35.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.125 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds