Wall clock time and date at job start Mon Mar 30 2020 06:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47122 * 240.00115 * 3 2 1 5 5 H 1.48496 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46865 * 120.00471 * 3 2 1 7 7 C 1.37871 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00158 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.01827 * 59.93762 * 9 7 2 11 11 C 1.54268 * 110.03590 * 298.55296 * 9 7 2 12 12 C 1.54887 * 104.31451 * 217.03889 * 11 9 7 13 13 C 1.55233 * 102.58951 * 37.92537 * 12 11 9 14 14 H 1.09006 * 110.58063 * 80.83502 * 13 12 11 15 15 O 1.42899 * 110.46814 * 203.39450 * 13 12 11 16 16 C 1.35894 * 117.00156 * 270.97733 * 15 13 12 17 17 C 1.38771 * 120.04498 * 185.45768 * 16 15 13 18 18 C 1.38135 * 119.99454 * 179.97438 * 17 16 15 19 19 C 1.38247 * 120.08378 * 0.02562 * 18 17 16 20 20 C 1.38473 * 120.08383 * 0.02562 * 19 18 17 21 21 F 1.35106 * 119.99752 * 179.97438 * 20 19 18 22 22 C 1.38391 * 120.00611 * 359.70211 * 20 19 18 23 23 C 1.53870 * 110.03630 * 181.38222 * 9 7 2 24 24 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.48362 * 335.78224 * 11 9 7 26 26 H 1.08996 * 110.48933 * 98.28858 * 11 9 7 27 27 H 1.08999 * 110.75527 * 156.32228 * 12 11 9 28 28 H 1.08999 * 110.75284 * 279.68733 * 12 11 9 29 29 H 1.08004 * 120.00073 * 359.96352 * 17 16 15 30 30 H 1.08001 * 119.95593 * 180.02562 * 18 17 16 31 31 H 1.07994 * 119.95670 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.03933 * 180.28907 * 22 20 19 33 33 H 1.09000 * 110.03563 * 238.56773 * 23 9 7 34 34 H 1.09003 * 110.03425 * 359.95770 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6199 -2.5656 -0.8867 11 6 0.3875 -2.6108 1.2728 12 6 0.4681 -4.1083 1.6600 13 6 1.9416 -4.4652 1.3267 14 1 2.6048 -4.1441 2.1300 15 8 2.0765 -5.8696 1.0997 16 6 2.3401 -6.6471 2.1826 17 6 2.5955 -8.0014 2.0200 18 6 2.8638 -8.7906 3.1214 19 6 2.8779 -8.2332 4.3865 20 6 2.6225 -6.8824 4.5527 21 9 2.6361 -6.3396 5.7899 22 6 2.3587 -6.0873 3.4512 23 6 2.2392 -3.6782 0.0337 24 1 -0.4849 0.8400 0.0004 25 1 0.7981 -1.9885 2.0680 26 1 -0.6432 -2.3264 1.0609 27 1 0.2659 -4.2440 2.7225 28 1 -0.2192 -4.7009 1.0562 29 1 2.5842 -8.4383 1.0323 30 1 3.0629 -9.8444 2.9941 31 1 3.0883 -8.8521 5.2461 32 1 2.1641 -5.0328 3.5798 33 1 2.0877 -4.3177 -0.8359 34 1 3.2638 -3.3065 0.0495 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:42 Heat of formation + Delta-G solvation = -88.346608 kcal Electronic energy + Delta-G solvation = -17804.725957 eV Core-core repulsion = 14809.005984 eV Total energy + Delta-G solvation = -2995.719973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.95968 -41.28332 -39.04316 -37.32169 -34.33414 -31.71543 -30.99164 -30.08201 -28.79276 -26.04385 -23.86258 -23.49561 -21.54959 -20.85363 -19.69900 -18.51643 -17.75225 -17.18261 -16.88659 -16.74396 -16.55879 -16.07093 -15.50651 -15.42025 -14.81651 -14.50545 -14.21621 -13.80940 -13.68362 -13.06712 -12.89545 -12.71045 -12.58540 -12.55776 -12.36206 -12.04739 -11.70194 -11.53949 -11.40841 -11.21310 -10.81447 -10.48211 -9.92740 -9.23651 -8.13434 -6.23637 0.13947 0.30604 1.42231 1.42823 1.50512 2.17795 2.42999 2.62113 3.17290 3.20639 3.73882 3.76596 3.81627 4.02397 4.04317 4.13916 4.31200 4.48791 4.63413 4.71346 4.82751 4.86186 4.95296 5.05550 5.08539 5.13050 5.23345 5.32244 5.35464 5.40175 5.63493 5.78388 5.84711 5.92018 6.32457 6.42404 6.86630 7.44033 8.95200 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.004793 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.718475 B = 5840.237153 C = 6148.907024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.039 3.961 10 H 0.003 0.997 11 C -0.082 4.082 12 C -0.137 4.137 13 C 0.090 3.910 14 H 0.078 0.922 15 O -0.312 6.312 16 C 0.144 3.856 17 C -0.170 4.170 18 C -0.040 4.040 19 C -0.192 4.192 20 C 0.118 3.882 21 F -0.147 7.147 22 C -0.264 4.264 23 C -0.101 4.101 24 H 0.261 0.739 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.180 0.820 31 H 0.161 0.839 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -16.839 7.032 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.021 0.979 11 C -0.120 4.120 12 C -0.174 4.174 13 C 0.034 3.966 14 H 0.096 0.904 15 O -0.226 6.226 16 C 0.098 3.902 17 C -0.188 4.188 18 C -0.058 4.058 19 C -0.211 4.211 20 C 0.098 3.902 21 F -0.126 7.126 22 C -0.284 4.284 23 C -0.139 4.139 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.170 0.830 30 H 0.197 0.803 31 H 0.178 0.822 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.933 -16.729 6.863 18.742 hybrid contribution 0.039 1.802 0.290 1.826 sum 4.972 -14.926 7.153 17.282 Atomic orbital electron populations 1.70085 1.07233 1.27342 1.51080 1.25749 0.95647 1.02392 0.94773 0.85695 0.78433 0.79170 0.78888 1.19572 1.21089 1.19630 1.21612 0.92979 0.91747 1.50954 0.92531 1.19197 0.92772 0.92153 0.93817 0.97929 1.21991 0.99411 0.92405 0.98226 1.23060 0.95777 0.97634 1.00956 1.23443 0.97104 0.76809 0.99224 0.90384 1.86135 1.84834 1.19763 1.31819 1.19155 0.93664 0.92056 0.85318 1.20903 1.05889 0.90025 1.02013 1.21239 0.93725 1.01357 0.89474 1.21375 1.06693 0.92414 1.00617 1.17686 1.00991 0.92807 0.78689 1.91477 1.94035 1.86764 1.40331 1.21343 1.12814 1.01774 0.92453 1.22219 1.00381 0.95804 0.95490 0.93041 0.94374 0.94105 0.91155 0.90984 0.82999 0.80275 0.82181 0.85091 0.91680 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.22 12.33 21.45 0.26 -52.95 16 2 C 0.01 0.74 5.32 84.65 0.45 1.19 16 3 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.53 -29.22 8.38 25.60 0.21 -29.00 16 8 H 0.06 3.01 7.33 -2.91 -0.02 2.99 16 9 C 0.04 1.96 2.84 -10.82 -0.03 1.93 16 10 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 11 C -0.08 -3.85 5.36 31.67 0.17 -3.68 16 12 C -0.14 -5.14 6.40 32.01 0.20 -4.94 16 13 C 0.09 3.27 2.69 31.79 0.09 3.35 16 14 H 0.08 2.78 6.27 -2.38 -0.01 2.77 16 15 O -0.31 -10.39 9.85 -92.35 -0.91 -11.30 16 16 C 0.14 4.12 6.66 22.50 0.15 4.27 16 17 C -0.17 -3.65 9.99 22.37 0.22 -3.43 16 18 C -0.04 -0.65 10.04 22.25 0.22 -0.42 16 19 C -0.19 -3.61 10.02 22.33 0.22 -3.39 16 20 C 0.12 3.01 7.30 22.36 0.16 3.18 16 21 F -0.15 -4.03 17.27 44.97 0.78 -3.25 16 22 C -0.26 -7.65 8.82 22.41 0.20 -7.46 16 23 C -0.10 -4.18 6.21 31.32 0.19 -3.99 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.04 1.88 7.85 -2.39 -0.02 1.86 16 26 H 0.04 2.05 7.92 -2.39 -0.02 2.04 16 27 H 0.07 2.40 7.63 -2.39 -0.02 2.38 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 29 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.13 4.05 5.49 -2.91 -0.02 4.03 16 33 H 0.06 2.55 8.07 -2.39 -0.02 2.53 16 34 H 0.06 2.66 7.37 -2.39 -0.02 2.64 16 Total: -1.00 -61.11 287.01 5.72 -55.39 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.10 Total: 9.06 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 2.47 Total: -42.38 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.26 Total: -52.95 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.91 Total: -11.30 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -61.11 5.72 -55.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.959 kcal (2) G-P(sol) polarization free energy of solvation -61.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds