Wall clock time and date at job start Mon Mar 30 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00202 * 2 1 4 4 H 1.48507 * 109.46931 * 239.99680 * 3 2 1 5 5 H 1.48504 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47783 * 119.99354 * 3 2 1 7 7 C 1.37882 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99728 * 180.28077 * 7 2 1 9 9 C 1.50694 * 120.00211 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.02109 * 300.06267 * 9 7 2 11 11 C 1.54262 * 110.03035 * 61.45435 * 9 7 2 12 12 C 1.54898 * 104.19663 * 142.89204 * 11 9 7 13 13 C 1.54886 * 102.74429 * 322.06090 * 12 11 9 14 14 H 1.09000 * 110.48264 * 279.25597 * 13 12 11 15 15 O 1.42905 * 110.48467 * 156.62244 * 13 12 11 16 16 C 1.35895 * 117.00191 * 85.07722 * 15 13 12 17 17 C 1.38761 * 120.04447 * 354.70010 * 16 15 13 18 18 C 1.38140 * 119.99621 * 179.97438 * 17 16 15 19 19 C 1.38246 * 120.08090 * 0.02562 * 18 17 16 20 20 C 1.38477 * 120.08068 * 0.02562 * 19 18 17 21 21 F 1.35103 * 119.99491 * 180.02562 * 20 19 18 22 22 C 1.38382 * 120.01045 * 359.70258 * 20 19 18 23 23 C 1.53873 * 110.03051 * 178.62174 * 9 7 2 24 24 H 0.96996 * 119.99591 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.48739 * 261.57228 * 11 9 7 26 26 H 1.09004 * 110.48898 * 24.08594 * 11 9 7 27 27 H 1.09004 * 110.74771 * 80.37147 * 12 11 9 28 28 H 1.08991 * 110.75530 * 203.74063 * 12 11 9 29 29 H 1.08004 * 120.00503 * 359.96204 * 17 16 15 30 30 H 1.08001 * 119.95604 * 179.97438 * 18 17 16 31 31 H 1.07994 * 119.95958 * 180.02562 * 19 18 17 32 32 H 1.07994 * 120.04537 * 180.29741 * 22 20 19 33 33 H 1.08996 * 110.03417 * 359.97438 * 23 9 7 34 34 H 1.08998 * 110.03393 * 121.43567 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0051 9 6 1.2510 -2.4992 0.0005 10 1 0.6198 -2.5656 0.8867 11 6 0.3875 -2.6107 -1.2729 12 6 0.4713 -4.1086 -1.6587 13 6 1.9415 -4.4652 -1.3266 14 1 2.6032 -4.1425 -2.1305 15 8 2.0764 -5.8697 -1.0996 16 6 2.2573 -6.6567 -2.1926 17 6 2.1942 -6.1049 -3.4642 18 6 2.3787 -6.9058 -4.5745 19 6 2.6258 -8.2573 -4.4207 20 6 2.6883 -8.8116 -3.1533 21 9 2.9303 -10.1325 -3.0050 22 6 2.5096 -8.0116 -2.0384 23 6 2.2391 -3.6783 -0.0336 24 1 -0.4849 0.8400 -0.0004 25 1 -0.6437 -2.3286 -1.0605 26 1 0.7969 -1.9867 -2.0674 27 1 -0.2159 -4.7018 -1.0552 28 1 0.2710 -4.2456 -2.7212 29 1 2.0007 -5.0493 -3.5859 30 1 2.3291 -6.4757 -5.5640 31 1 2.7701 -8.8815 -5.2901 32 1 2.5630 -8.4424 -1.0495 33 1 3.2636 -3.3065 -0.0506 34 1 2.0875 -4.3178 0.8359 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260584051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:44 Heat of formation + Delta-G solvation = -74.746615 kcal Electronic energy + Delta-G solvation = -17700.319821 eV Core-core repulsion = 14705.189588 eV Total energy + Delta-G solvation = -2995.130233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.97006 -40.10848 -37.72777 -35.83284 -32.38634 -30.82518 -29.77436 -28.31323 -27.18593 -24.16954 -22.86402 -22.36468 -20.02954 -19.07900 -18.45924 -16.60004 -16.48042 -16.21118 -15.96247 -15.70492 -14.84278 -14.49276 -14.37047 -13.77902 -13.62860 -13.09841 -12.57330 -12.50407 -12.14512 -11.78395 -11.65274 -11.21571 -11.10042 -10.83672 -10.68190 -10.29806 -10.20261 -9.91601 -9.67025 -9.38958 -8.91075 -8.82435 -8.42434 -8.18291 -6.06279 -4.09867 1.10659 1.29826 3.28548 3.31873 3.33941 3.36506 3.59079 4.33544 4.39787 4.75291 4.94326 5.02928 5.20546 5.28171 5.32638 5.38700 5.40495 5.66002 5.90866 6.03845 6.11788 6.23060 6.29140 6.38428 6.45917 6.49132 6.62371 6.77292 6.87569 7.08974 7.22679 7.62502 7.66528 7.78830 7.94076 8.37063 8.92565 9.54506 11.03028 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.050637 B = 0.004259 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.822569 B = 6572.279882 C = 6652.405801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.090 4.090 12 C -0.152 4.152 13 C 0.078 3.922 14 H 0.075 0.925 15 O -0.305 6.305 16 C 0.174 3.826 17 C -0.220 4.220 18 C -0.051 4.051 19 C -0.203 4.203 20 C 0.134 3.866 21 F -0.139 7.139 22 C -0.200 4.200 23 C -0.107 4.107 24 H 0.261 0.739 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.065 0.935 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -12.825 -7.689 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.028 3.972 10 H 0.051 0.949 11 C -0.128 4.128 12 C -0.190 4.190 13 C 0.023 3.977 14 H 0.093 0.907 15 O -0.218 6.218 16 C 0.127 3.873 17 C -0.239 4.239 18 C -0.069 4.069 19 C -0.223 4.223 20 C 0.114 3.886 21 F -0.118 7.118 22 C -0.220 4.220 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.150 -12.774 -7.454 15.122 hybrid contribution 0.448 0.842 -0.180 0.971 sum 3.598 -11.932 -7.635 14.615 Atomic orbital electron populations 1.69955 1.05887 1.26686 1.50143 1.24983 0.94854 0.99059 0.95025 0.86689 0.79631 0.83227 0.78640 1.20286 1.21314 1.20257 1.21234 0.92698 0.90400 1.51300 0.92568 1.19222 0.92201 0.91196 0.94532 0.94921 1.22236 1.01373 0.89759 0.99461 1.23195 0.95044 1.00823 0.99933 1.23751 0.97725 0.75490 1.00746 0.90712 1.86171 1.85200 1.20480 1.29969 1.18736 0.91626 0.90192 0.86793 1.21548 1.08618 1.01853 0.91844 1.20786 0.95086 0.92325 0.98730 1.20951 1.09079 0.96496 0.95723 1.17279 1.00065 0.77451 0.93773 1.91491 1.91741 1.31902 1.96658 1.20267 1.10486 0.92009 0.99194 1.22413 1.01691 0.96652 0.93726 0.92937 0.91836 0.92519 0.91472 0.92748 0.84205 0.84903 0.85011 0.84176 0.91593 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 12.33 55.43 0.68 -24.11 16 2 C 0.06 1.69 5.32 -17.82 -0.09 1.59 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.68 8.38 -34.44 -0.29 -13.97 16 8 H 0.06 1.46 7.33 -52.49 -0.38 1.07 16 9 C 0.05 1.12 2.84 -90.66 -0.26 0.86 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.09 -1.99 5.37 -25.07 -0.13 -2.13 16 12 C -0.15 -2.76 6.21 -24.73 -0.15 -2.91 16 13 C 0.08 1.39 2.70 -25.07 -0.07 1.32 16 14 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 15 O -0.31 -5.23 9.86 -19.41 -0.19 -5.42 16 16 C 0.17 2.62 6.62 -39.23 -0.26 2.36 16 17 C -0.22 -2.96 8.67 -39.42 -0.34 -3.30 16 18 C -0.05 -0.57 10.04 -39.61 -0.40 -0.97 16 19 C -0.20 -2.30 10.02 -39.49 -0.40 -2.69 16 20 C 0.13 1.72 7.30 -39.44 -0.29 1.43 16 21 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 22 C -0.20 -2.77 9.97 -39.37 -0.39 -3.17 16 23 C -0.11 -2.17 6.21 -25.61 -0.16 -2.33 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.06 1.50 7.93 -51.93 -0.41 1.09 16 26 H 0.06 1.31 7.85 -51.93 -0.41 0.91 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.88 7.20 -51.93 -0.37 0.50 16 29 H 0.14 1.85 5.27 -52.48 -0.28 1.58 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.07 1.32 7.37 -51.93 -0.38 0.94 16 34 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -27.31 286.26 -7.65 -34.96 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.24 Total: 0.19 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.23 Total: -23.89 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.68 Total: -24.11 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.19 Total: -5.42 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.31 -7.65 -34.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.785 kcal (2) G-P(sol) polarization free energy of solvation -27.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds