Wall clock time and date at job start Mon Mar 30 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00202 * 2 1 4 4 H 1.48507 * 109.46931 * 239.99680 * 3 2 1 5 5 H 1.48504 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47783 * 119.99354 * 3 2 1 7 7 C 1.37882 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99728 * 180.28077 * 7 2 1 9 9 C 1.50694 * 120.00211 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.02109 * 300.06267 * 9 7 2 11 11 C 1.54262 * 110.03035 * 61.45435 * 9 7 2 12 12 C 1.54898 * 104.19663 * 142.89204 * 11 9 7 13 13 C 1.54886 * 102.74429 * 322.06090 * 12 11 9 14 14 H 1.09000 * 110.48264 * 279.25597 * 13 12 11 15 15 O 1.42905 * 110.48467 * 156.62244 * 13 12 11 16 16 C 1.35895 * 117.00191 * 85.07722 * 15 13 12 17 17 C 1.38761 * 120.04447 * 354.70010 * 16 15 13 18 18 C 1.38140 * 119.99621 * 179.97438 * 17 16 15 19 19 C 1.38246 * 120.08090 * 0.02562 * 18 17 16 20 20 C 1.38477 * 120.08068 * 0.02562 * 19 18 17 21 21 F 1.35103 * 119.99491 * 180.02562 * 20 19 18 22 22 C 1.38382 * 120.01045 * 359.70258 * 20 19 18 23 23 C 1.53873 * 110.03051 * 178.62174 * 9 7 2 24 24 H 0.96996 * 119.99591 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.48739 * 261.57228 * 11 9 7 26 26 H 1.09004 * 110.48898 * 24.08594 * 11 9 7 27 27 H 1.09004 * 110.74771 * 80.37147 * 12 11 9 28 28 H 1.08991 * 110.75530 * 203.74063 * 12 11 9 29 29 H 1.08004 * 120.00503 * 359.96204 * 17 16 15 30 30 H 1.08001 * 119.95604 * 179.97438 * 18 17 16 31 31 H 1.07994 * 119.95958 * 180.02562 * 19 18 17 32 32 H 1.07994 * 120.04537 * 180.29741 * 22 20 19 33 33 H 1.08996 * 110.03417 * 359.97438 * 23 9 7 34 34 H 1.08998 * 110.03393 * 121.43567 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0051 9 6 1.2510 -2.4992 0.0005 10 1 0.6198 -2.5656 0.8867 11 6 0.3875 -2.6107 -1.2729 12 6 0.4713 -4.1086 -1.6587 13 6 1.9415 -4.4652 -1.3266 14 1 2.6032 -4.1425 -2.1305 15 8 2.0764 -5.8697 -1.0996 16 6 2.2573 -6.6567 -2.1926 17 6 2.1942 -6.1049 -3.4642 18 6 2.3787 -6.9058 -4.5745 19 6 2.6258 -8.2573 -4.4207 20 6 2.6883 -8.8116 -3.1533 21 9 2.9303 -10.1325 -3.0050 22 6 2.5096 -8.0116 -2.0384 23 6 2.2391 -3.6783 -0.0336 24 1 -0.4849 0.8400 -0.0004 25 1 -0.6437 -2.3286 -1.0605 26 1 0.7969 -1.9867 -2.0674 27 1 -0.2159 -4.7018 -1.0552 28 1 0.2710 -4.2456 -2.7212 29 1 2.0007 -5.0493 -3.5859 30 1 2.3291 -6.4757 -5.5640 31 1 2.7701 -8.8815 -5.2901 32 1 2.5630 -8.4424 -1.0495 33 1 3.2636 -3.3065 -0.0506 34 1 2.0875 -4.3178 0.8359 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:44 Heat of formation + Delta-G solvation = -87.891975 kcal Electronic energy + Delta-G solvation = -17700.889847 eV Core-core repulsion = 14705.189588 eV Total energy + Delta-G solvation = -2995.700258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.95162 -41.30199 -39.01309 -37.30808 -34.32659 -31.86824 -30.82633 -30.04604 -28.79149 -26.01021 -23.87406 -23.53767 -21.49690 -20.82124 -19.62560 -18.49854 -17.56745 -17.23779 -17.13735 -16.72360 -16.53531 -16.05860 -15.54605 -15.27246 -14.69351 -14.47729 -14.26886 -13.81163 -13.70375 -13.08406 -12.90280 -12.72661 -12.68124 -12.48143 -12.23952 -12.04807 -11.63356 -11.49492 -11.37858 -11.19963 -10.78964 -10.45997 -9.89848 -9.25891 -8.11500 -6.21609 0.12458 0.31366 1.44148 1.44760 1.52329 2.09997 2.44744 2.60803 3.19237 3.35854 3.72278 3.83031 3.88633 4.01900 4.08496 4.15482 4.25618 4.43396 4.62885 4.74706 4.85903 4.89271 4.98226 5.03349 5.09878 5.12046 5.25564 5.34114 5.38616 5.42795 5.66149 5.78101 5.88589 5.94278 6.34597 6.44823 6.88770 7.46034 8.97090 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.050637 B = 0.004259 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.822569 B = 6572.279882 C = 6652.405801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.038 3.962 10 H -0.002 1.002 11 C -0.081 4.081 12 C -0.138 4.138 13 C 0.092 3.908 14 H 0.088 0.912 15 O -0.319 6.319 16 C 0.146 3.854 17 C -0.225 4.225 18 C -0.044 4.044 19 C -0.191 4.191 20 C 0.124 3.876 21 F -0.141 7.141 22 C -0.209 4.209 23 C -0.103 4.103 24 H 0.260 0.740 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.065 0.935 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 -13.594 -9.746 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.075 0.925 9 C 0.019 3.981 10 H 0.017 0.983 11 C -0.119 4.119 12 C -0.176 4.176 13 C 0.037 3.963 14 H 0.106 0.894 15 O -0.233 6.233 16 C 0.100 3.900 17 C -0.244 4.244 18 C -0.061 4.061 19 C -0.210 4.210 20 C 0.105 3.895 21 F -0.120 7.120 22 C -0.229 4.229 23 C -0.141 4.141 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.164 -13.564 -9.515 17.084 hybrid contribution 0.142 0.984 0.439 1.087 sum 4.307 -12.581 -9.076 16.099 Atomic orbital electron populations 1.70086 1.07235 1.27318 1.51106 1.25743 0.95625 1.02354 0.94805 0.85698 0.78412 0.79177 0.78899 1.19342 1.21205 1.19854 1.21609 0.92984 0.91685 1.50907 0.92489 1.19207 0.92783 0.92106 0.93964 0.98348 1.21979 0.99228 0.92561 0.98142 1.23053 0.95589 0.97421 1.01512 1.23403 0.97378 0.76218 0.99318 0.89416 1.86110 1.86117 1.19792 1.31288 1.18925 0.93755 0.90377 0.86911 1.21692 1.08612 1.02283 0.91816 1.21170 0.93381 0.92028 0.99564 1.21332 1.06890 0.96902 0.95889 1.17434 1.00479 0.77374 0.94230 1.91489 1.91788 1.31958 1.96717 1.20358 1.10752 0.91914 0.99868 1.22225 1.00483 0.95790 0.95572 0.93064 0.94303 0.93822 0.91602 0.90059 0.84030 0.81461 0.82146 0.84214 0.91588 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.40 12.33 21.45 0.26 -52.13 16 2 C 0.01 0.75 5.32 84.66 0.45 1.20 16 3 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -28.60 8.38 25.60 0.21 -28.39 16 8 H 0.06 2.97 7.33 -2.91 -0.02 2.95 16 9 C 0.04 1.86 2.84 -10.82 -0.03 1.83 16 10 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 11 C -0.08 -3.64 5.37 31.67 0.17 -3.47 16 12 C -0.14 -4.89 6.21 31.89 0.20 -4.69 16 13 C 0.09 3.19 2.70 31.67 0.09 3.28 16 14 H 0.09 2.81 6.53 -2.39 -0.02 2.80 16 15 O -0.32 -10.67 9.86 -92.37 -0.91 -11.58 16 16 C 0.15 4.19 6.62 22.50 0.15 4.34 16 17 C -0.23 -5.44 8.67 22.37 0.19 -5.25 16 18 C -0.04 -0.81 10.04 22.25 0.22 -0.58 16 19 C -0.19 -3.60 10.02 22.33 0.22 -3.38 16 20 C 0.12 2.91 7.30 22.36 0.16 3.07 16 21 F -0.14 -3.34 17.27 44.97 0.78 -2.56 16 22 C -0.21 -5.55 9.97 22.41 0.22 -5.33 16 23 C -0.10 -4.19 6.21 31.32 0.19 -4.00 16 24 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 25 H 0.04 1.90 7.93 -2.39 -0.02 1.88 16 26 H 0.04 2.04 7.85 -2.39 -0.02 2.02 16 27 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.08 2.45 7.20 -2.39 -0.02 2.43 16 29 H 0.14 3.34 5.27 -2.91 -0.02 3.33 16 30 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.07 2.65 7.37 -2.39 -0.02 2.63 16 34 H 0.06 2.33 8.07 -2.39 -0.02 2.31 16 Total: -1.00 -59.24 286.26 5.71 -53.53 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.10 Total: 9.47 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 2.46 Total: -41.36 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.26 Total: -52.13 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.91 Total: -11.58 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -59.24 5.71 -53.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.360 kcal (2) G-P(sol) polarization free energy of solvation -59.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds