Wall clock time and date at job start Mon Mar 30 2020 06:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48504 * 109.47185 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47494 * 30.00016 * 3 2 1 6 6 H 1.48499 * 109.47308 * 150.00025 * 3 2 1 7 7 C 1.37884 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99486 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99990 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.82215 * 298.12197 * 9 7 2 11 11 C 1.54897 * 110.75461 * 61.45777 * 9 7 2 12 12 C 1.54265 * 104.31005 * 156.32472 * 11 9 7 13 13 C 1.53872 * 106.59993 * 336.32021 * 12 11 9 14 14 H 1.09006 * 110.03214 * 119.33760 * 13 12 11 15 15 O 1.42900 * 110.03206 * 240.71657 * 13 12 11 16 16 C 1.35893 * 117.00162 * 275.87432 * 15 13 12 17 17 C 1.38768 * 120.04380 * 4.94886 * 16 15 13 18 18 C 1.38134 * 119.99512 * 179.74801 * 17 16 15 19 19 C 1.38252 * 120.07776 * 0.54686 * 18 17 16 20 20 C 1.38474 * 120.08917 * 359.70348 * 19 18 17 21 21 F 1.35094 * 120.00117 * 179.97438 * 20 19 18 22 22 C 1.38387 * 120.00278 * 0.02562 * 20 19 18 23 23 C 1.54263 * 106.60037 * 0.02562 * 13 12 11 24 24 H 0.96998 * 119.99600 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.48653 * 37.57805 * 11 9 7 26 26 H 1.09009 * 110.47953 * 275.06542 * 11 9 7 27 27 H 1.09000 * 110.03263 * 95.61181 * 12 11 9 28 28 H 1.09001 * 110.02663 * 216.98663 * 12 11 9 29 29 H 1.07996 * 120.00235 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.96140 * 180.29524 * 18 17 16 31 31 H 1.08011 * 119.95481 * 179.72493 * 19 18 17 32 32 H 1.07995 * 120.04217 * 180.02562 * 22 20 19 33 33 H 1.08995 * 110.48675 * 142.28496 * 23 13 12 34 34 H 1.09005 * 110.48528 * 264.93646 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6418 -2.5948 0.8982 11 6 0.3768 -2.6282 -1.2726 12 6 0.1789 -4.1482 -1.4468 13 6 1.3539 -4.8300 -0.7241 14 1 0.9799 -5.4693 0.0758 15 8 2.1168 -5.6037 -1.6522 16 6 1.6747 -6.8610 -1.9176 17 6 0.4755 -7.3041 -1.3779 18 6 0.0244 -8.5805 -1.6526 19 6 0.7720 -9.4217 -2.4557 20 6 1.9717 -8.9848 -2.9917 21 9 2.7009 -9.8084 -3.7758 22 6 2.4241 -7.7048 -2.7234 23 6 2.2244 -3.7007 -0.1354 24 1 -0.4849 0.8401 0.0004 25 1 0.8947 -2.2095 -2.1356 26 1 -0.5832 -2.1326 -1.1275 27 1 -0.7652 -4.4557 -0.9972 28 1 0.1899 -4.4072 -2.5055 29 1 -0.1073 -6.6495 -0.7469 30 1 -0.9113 -8.9232 -1.2362 31 1 0.4196 -10.4209 -2.6655 32 1 3.3595 -7.3633 -3.1415 33 1 2.6130 -3.9884 0.8414 34 1 3.0407 -3.4549 -0.8146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260584054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:46 Heat of formation + Delta-G solvation = -74.804675 kcal Electronic energy + Delta-G solvation = -17673.814054 eV Core-core repulsion = 14678.681303 eV Total energy + Delta-G solvation = -2995.132750 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.97657 -40.14594 -37.73626 -35.73147 -32.39488 -30.83514 -29.76012 -28.29797 -27.25744 -24.20295 -22.87618 -22.38220 -19.78311 -19.41217 -18.26840 -16.68492 -16.37154 -16.18932 -15.89760 -15.65939 -15.06604 -14.55467 -14.34441 -13.79317 -13.65634 -13.09486 -12.63396 -12.37489 -11.97194 -11.83802 -11.78542 -11.19404 -11.09164 -10.88958 -10.60391 -10.36634 -10.20119 -9.94900 -9.61022 -9.29123 -8.92342 -8.86967 -8.41784 -8.19941 -6.05435 -4.08607 1.09427 1.28849 3.29109 3.31334 3.36129 3.39826 3.57756 4.32438 4.41801 4.73621 4.93392 5.00687 5.22529 5.23754 5.30877 5.36540 5.42311 5.61445 5.89914 6.03029 6.06770 6.21554 6.28611 6.38065 6.42364 6.59343 6.61362 6.75984 6.84650 7.11867 7.20551 7.63749 7.66130 7.82785 7.96126 8.37429 8.93062 9.55924 11.03908 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.054055 B = 0.004219 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.867114 B = 6634.518795 C = 6920.019429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.053 3.947 10 H 0.033 0.967 11 C -0.099 4.099 12 C -0.150 4.150 13 C 0.079 3.921 14 H 0.067 0.933 15 O -0.302 6.302 16 C 0.173 3.827 17 C -0.221 4.221 18 C -0.051 4.051 19 C -0.204 4.204 20 C 0.134 3.866 21 F -0.139 7.139 22 C -0.200 4.200 23 C -0.111 4.111 24 H 0.260 0.740 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.057 0.943 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -15.366 -3.149 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.138 4.138 12 C -0.188 4.188 13 C 0.023 3.977 14 H 0.085 0.915 15 O -0.215 6.215 16 C 0.126 3.874 17 C -0.239 4.239 18 C -0.069 4.069 19 C -0.223 4.223 20 C 0.115 3.885 21 F -0.118 7.118 22 C -0.219 4.219 23 C -0.149 4.149 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.075 0.925 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.293 -15.147 -3.241 15.493 hybrid contribution 0.316 0.719 -0.113 0.793 sum 0.023 -14.429 -3.354 14.814 Atomic orbital electron populations 1.69950 1.05903 1.26554 1.50423 1.24966 0.94858 0.99080 0.94935 0.86603 0.79890 0.83437 0.78134 1.20673 1.21259 1.19883 1.21075 0.92919 0.90236 1.51050 0.92446 1.19623 0.91883 0.90997 0.94017 0.94922 1.22295 1.01872 0.89662 0.99925 1.22846 0.96224 1.00190 0.99526 1.23573 0.93178 0.91722 0.89178 0.91545 1.86236 1.52775 1.21715 1.60813 1.18765 0.91445 0.85050 0.92181 1.21500 0.97875 0.98424 1.06132 1.20775 0.98642 0.92462 0.95051 1.20951 0.95575 1.01896 1.03884 1.17282 0.90711 0.87950 0.92544 1.91490 1.76862 1.71339 1.72068 1.20282 1.03344 0.92698 1.05596 1.22687 0.99345 0.94061 0.98776 0.93013 0.93066 0.90938 0.92270 0.92228 0.84390 0.84930 0.85006 0.84125 0.92462 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 12.02 55.43 0.67 -24.23 16 2 C 0.06 1.72 5.33 -17.82 -0.10 1.62 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.78 8.55 -34.44 -0.29 -14.08 16 8 H 0.06 1.52 7.79 -52.49 -0.41 1.11 16 9 C 0.05 1.27 2.84 -89.60 -0.25 1.02 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.10 -2.24 5.56 -25.07 -0.14 -2.38 16 12 C -0.15 -2.73 5.75 -25.62 -0.15 -2.88 16 13 C 0.08 1.38 2.82 -25.62 -0.07 1.31 16 14 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16 15 O -0.30 -5.25 9.71 -19.40 -0.19 -5.44 16 16 C 0.17 2.61 6.60 -39.22 -0.26 2.35 16 17 C -0.22 -2.90 8.73 -39.42 -0.34 -3.24 16 18 C -0.05 -0.56 10.04 -39.61 -0.40 -0.96 16 19 C -0.20 -2.28 10.02 -39.49 -0.40 -2.68 16 20 C 0.13 1.73 7.30 -39.44 -0.29 1.44 16 21 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 22 C -0.20 -2.79 9.97 -39.36 -0.39 -3.18 16 23 C -0.11 -2.24 5.99 -24.90 -0.15 -2.39 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.05 1.22 8.04 -51.93 -0.42 0.80 16 26 H 0.07 1.77 7.37 -51.92 -0.38 1.38 16 27 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 28 H 0.06 1.06 7.96 -51.93 -0.41 0.64 16 29 H 0.14 1.74 5.61 -52.49 -0.29 1.45 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.52 7.98 -51.93 -0.41 1.10 16 LS Contribution 287.32 15.07 4.33 4.33 Total: -1.00 -27.64 287.32 -7.73 -35.37 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.33 Total: -0.15 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.23 Total: -24.05 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.67 Total: -24.23 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.19 Total: -5.44 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.64 -7.73 -35.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.431 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds