Wall clock time and date at job start Mon Mar 30 2020 06:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48504 * 109.47185 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47494 * 30.00016 * 3 2 1 6 6 H 1.48499 * 109.47308 * 150.00025 * 3 2 1 7 7 C 1.37884 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99486 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99990 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.82215 * 298.12197 * 9 7 2 11 11 C 1.54897 * 110.75461 * 61.45777 * 9 7 2 12 12 C 1.54265 * 104.31005 * 156.32472 * 11 9 7 13 13 C 1.53872 * 106.59993 * 336.32021 * 12 11 9 14 14 H 1.09006 * 110.03214 * 119.33760 * 13 12 11 15 15 O 1.42900 * 110.03206 * 240.71657 * 13 12 11 16 16 C 1.35893 * 117.00162 * 275.87432 * 15 13 12 17 17 C 1.38768 * 120.04380 * 4.94886 * 16 15 13 18 18 C 1.38134 * 119.99512 * 179.74801 * 17 16 15 19 19 C 1.38252 * 120.07776 * 0.54686 * 18 17 16 20 20 C 1.38474 * 120.08917 * 359.70348 * 19 18 17 21 21 F 1.35094 * 120.00117 * 179.97438 * 20 19 18 22 22 C 1.38387 * 120.00278 * 0.02562 * 20 19 18 23 23 C 1.54263 * 106.60037 * 0.02562 * 13 12 11 24 24 H 0.96998 * 119.99600 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.48653 * 37.57805 * 11 9 7 26 26 H 1.09009 * 110.47953 * 275.06542 * 11 9 7 27 27 H 1.09000 * 110.03263 * 95.61181 * 12 11 9 28 28 H 1.09001 * 110.02663 * 216.98663 * 12 11 9 29 29 H 1.07996 * 120.00235 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.96140 * 180.29524 * 18 17 16 31 31 H 1.08011 * 119.95481 * 179.72493 * 19 18 17 32 32 H 1.07995 * 120.04217 * 180.02562 * 22 20 19 33 33 H 1.08995 * 110.48675 * 142.28496 * 23 13 12 34 34 H 1.09005 * 110.48528 * 264.93646 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6418 -2.5948 0.8982 11 6 0.3768 -2.6282 -1.2726 12 6 0.1789 -4.1482 -1.4468 13 6 1.3539 -4.8300 -0.7241 14 1 0.9799 -5.4693 0.0758 15 8 2.1168 -5.6037 -1.6522 16 6 1.6747 -6.8610 -1.9176 17 6 0.4755 -7.3041 -1.3779 18 6 0.0244 -8.5805 -1.6526 19 6 0.7720 -9.4217 -2.4557 20 6 1.9717 -8.9848 -2.9917 21 9 2.7009 -9.8084 -3.7758 22 6 2.4241 -7.7048 -2.7234 23 6 2.2244 -3.7007 -0.1354 24 1 -0.4849 0.8401 0.0004 25 1 0.8947 -2.2095 -2.1356 26 1 -0.5832 -2.1326 -1.1275 27 1 -0.7652 -4.4557 -0.9972 28 1 0.1899 -4.4072 -2.5055 29 1 -0.1073 -6.6495 -0.7469 30 1 -0.9113 -8.9232 -1.2362 31 1 0.4196 -10.4209 -2.6655 32 1 3.3595 -7.3633 -3.1415 33 1 2.6130 -3.9884 0.8414 34 1 3.0407 -3.4549 -0.8146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:46 Heat of formation + Delta-G solvation = -88.282422 kcal Electronic energy + Delta-G solvation = -17674.398493 eV Core-core repulsion = 14678.681303 eV Total energy + Delta-G solvation = -2995.717189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.95821 -41.32905 -38.99131 -37.21934 -34.34778 -31.86819 -30.79427 -30.02848 -28.85983 -26.04704 -23.87639 -23.53960 -21.29923 -21.05704 -19.51250 -18.36976 -17.50653 -17.30787 -17.09812 -16.72348 -16.59676 -16.27161 -15.63935 -15.09518 -14.70176 -14.59156 -14.16467 -13.69385 -13.65345 -13.13806 -12.91661 -12.89710 -12.65142 -12.44209 -12.18908 -12.08796 -11.69556 -11.47157 -11.36764 -11.08791 -10.83719 -10.47102 -9.90062 -9.26111 -8.12646 -6.22048 0.12444 0.31519 1.41717 1.43059 1.52657 2.11903 2.44534 2.60850 3.18380 3.36198 3.71505 3.84620 3.90180 3.99614 4.07958 4.12859 4.28718 4.43282 4.61072 4.74253 4.83810 4.97684 5.00052 5.03760 5.09440 5.11354 5.26945 5.33177 5.37718 5.38700 5.64708 5.78280 5.89136 5.97095 6.36008 6.46614 6.86419 7.45355 8.95774 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.054055 B = 0.004219 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.867114 B = 6634.518795 C = 6920.019429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.043 3.957 10 H 0.014 0.986 11 C -0.093 4.093 12 C -0.138 4.138 13 C 0.091 3.909 14 H 0.092 0.908 15 O -0.322 6.322 16 C 0.145 3.855 17 C -0.224 4.224 18 C -0.043 4.043 19 C -0.192 4.192 20 C 0.124 3.876 21 F -0.142 7.142 22 C -0.212 4.212 23 C -0.106 4.106 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.145 0.855 30 H 0.170 0.830 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.070 0.930 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -17.187 -3.038 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.025 3.975 10 H 0.032 0.968 11 C -0.131 4.131 12 C -0.175 4.175 13 C 0.035 3.965 14 H 0.110 0.890 15 O -0.236 6.236 16 C 0.099 3.901 17 C -0.242 4.242 18 C -0.060 4.060 19 C -0.211 4.211 20 C 0.104 3.896 21 F -0.120 7.120 22 C -0.232 4.232 23 C -0.143 4.143 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.155 0.845 33 H 0.088 0.912 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.887 -16.987 -3.136 17.297 hybrid contribution 0.500 1.195 -0.173 1.306 sum -0.388 -15.792 -3.309 16.140 Atomic orbital electron populations 1.70060 1.07064 1.27235 1.51166 1.25699 0.95681 1.02223 0.94725 0.85656 0.78850 0.79622 0.78140 1.20392 1.20788 1.19291 1.21461 0.93014 0.91960 1.50906 0.92974 1.19589 0.92612 0.91629 0.93670 0.96771 1.22073 0.99901 0.92858 0.98306 1.22719 0.97825 0.96622 1.00354 1.23286 0.91902 0.91440 0.89838 0.89000 1.86172 1.53205 1.23069 1.61128 1.18955 0.92882 0.84366 0.93879 1.21680 0.97080 0.99551 1.05921 1.21185 0.99599 0.91247 0.94018 1.21341 0.94314 1.03099 1.02327 1.17446 0.91515 0.87600 0.92999 1.91484 1.77099 1.71230 1.72203 1.20365 1.03501 0.93389 1.05902 1.22504 0.98477 0.93843 0.99522 0.93019 0.95433 0.93307 0.89929 0.91718 0.83754 0.81275 0.82141 0.84508 0.91172 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 12.02 21.45 0.26 -52.01 16 2 C 0.02 0.87 5.33 84.66 0.45 1.32 16 3 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.54 -29.32 8.55 25.60 0.22 -29.10 16 8 H 0.05 2.83 7.79 -2.91 -0.02 2.80 16 9 C 0.04 2.12 2.84 -10.13 -0.03 2.09 16 10 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 11 C -0.09 -4.30 5.56 31.67 0.18 -4.12 16 12 C -0.14 -4.87 5.75 31.32 0.18 -4.69 16 13 C 0.09 3.07 2.82 31.32 0.09 3.16 16 14 H 0.09 2.65 6.47 -2.38 -0.02 2.64 16 15 O -0.32 -10.94 9.71 -92.35 -0.90 -11.83 16 16 C 0.15 4.17 6.60 22.50 0.15 4.32 16 17 C -0.22 -5.21 8.73 22.37 0.20 -5.02 16 18 C -0.04 -0.76 10.04 22.25 0.22 -0.53 16 19 C -0.19 -3.57 10.02 22.33 0.22 -3.35 16 20 C 0.12 2.93 7.30 22.36 0.16 3.09 16 21 F -0.14 -3.41 17.27 44.97 0.78 -2.64 16 22 C -0.21 -5.74 9.97 22.41 0.22 -5.51 16 23 C -0.11 -4.28 5.99 31.78 0.19 -4.09 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 26 H 0.05 2.44 7.37 -2.38 -0.02 2.42 16 27 H 0.08 2.54 7.99 -2.39 -0.02 2.52 16 28 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 29 H 0.14 3.14 5.61 -2.91 -0.02 3.13 16 30 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 2.49 7.98 -2.38 -0.02 2.47 16 Total: -1.00 -60.39 287.32 5.71 -54.68 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.09 Total: 8.78 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 2.45 Total: -42.42 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.26 Total: -52.01 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.90 Total: -11.83 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -60.39 5.71 -54.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.599 kcal (2) G-P(sol) polarization free energy of solvation -60.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds