Wall clock time and date at job start Mon Mar 30 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.24834 * 2 1 4 4 C 1.50627 * 109.25327 * 240.56634 * 2 1 3 5 5 C 1.39026 * 117.74779 * 42.23142 * 4 2 1 6 6 Cl 1.73596 * 119.74002 * 359.77460 * 5 4 2 7 7 C 1.38047 * 120.51646 * 179.80235 * 5 4 2 8 8 C 1.38244 * 119.75738 * 359.96144 * 7 5 4 9 9 C 1.37928 * 119.78441 * 0.10349 * 8 7 5 10 10 C 1.37644 * 122.57529 * 222.16366 * 4 2 1 11 11 C 1.50632 * 122.56446 * 0.36936 * 10 4 2 12 12 C 1.52735 * 110.59628 * 342.47271 * 11 10 4 13 13 C 1.52732 * 109.25072 * 119.46767 * 2 1 3 14 14 H 1.09000 * 109.68929 * 51.64144 * 13 2 1 15 15 C 1.50707 * 109.68637 * 291.07815 * 13 2 1 16 16 H 1.07995 * 120.00084 * 0.02562 * 15 13 2 17 17 C 1.37881 * 119.99823 * 179.97438 * 15 13 2 18 18 N 1.31519 * 119.99435 * 180.02562 * 17 15 13 19 19 Si 1.86801 * 120.00124 * 0.02562 * 17 15 13 20 20 H 1.48494 * 109.47025 * 89.99843 * 19 17 15 21 21 H 1.48504 * 109.46745 * 209.99739 * 19 17 15 22 22 H 1.48497 * 109.47077 * 329.99751 * 19 17 15 23 23 H 1.08998 * 109.47085 * 270.69433 * 1 2 3 24 24 H 1.09005 * 109.46799 * 30.69348 * 1 2 3 25 25 H 1.08996 * 109.47039 * 150.69096 * 1 2 3 26 26 H 1.08006 * 120.11902 * 179.97438 * 7 5 4 27 27 H 1.08001 * 120.10392 * 180.11974 * 8 7 5 28 28 H 1.08009 * 119.70989 * 179.97438 * 9 8 7 29 29 H 1.09002 * 109.25534 * 222.18414 * 11 10 4 30 30 H 1.09001 * 109.22482 * 102.74178 * 11 10 4 31 31 H 1.09009 * 109.68172 * 291.33588 * 12 11 10 32 32 H 1.08998 * 109.71632 * 170.79576 * 12 11 10 33 33 H 0.96997 * 119.99049 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8894 1.0291 0.0000 4 6 2.0267 -0.6988 -1.2385 5 6 1.3801 -0.4265 -2.4387 6 17 0.0454 0.6832 -2.4653 7 6 1.7908 -1.0321 -3.6093 8 6 2.8538 -1.9156 -3.5885 9 6 3.4953 -2.1877 -2.3982 10 6 3.0828 -1.5814 -1.2183 11 6 3.8252 -1.9286 0.0455 12 6 3.5511 -0.8907 1.1321 13 6 2.0336 -0.7093 1.2554 14 1 1.5534 -1.6838 1.3442 15 6 1.7192 0.1249 2.4705 16 1 1.2089 1.0701 2.3593 17 6 2.0822 -0.3193 3.7243 18 7 1.8073 0.4085 4.7847 19 14 2.9643 -1.9546 3.9168 20 1 4.4313 -1.7376 3.8411 21 1 2.6193 -2.5512 5.2323 22 1 2.5433 -2.8750 2.8302 23 1 -0.3633 0.0125 1.0276 24 1 -0.3633 0.8838 -0.5246 25 1 -0.3633 -0.8961 -0.5030 26 1 1.2835 -0.8161 -4.5381 27 1 3.1810 -2.3911 -4.5013 28 1 4.3255 -2.8785 -2.3832 29 1 4.8948 -1.9575 -0.1623 30 1 3.5005 -2.9088 0.3948 31 1 4.0133 0.0579 0.8585 32 1 3.9580 -1.2368 2.0822 33 1 2.0631 0.0962 5.6667 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260584559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:15 Heat of formation + Delta-G solvation = -3.204525 kcal Electronic energy + Delta-G solvation = -16480.718003 eV Core-core repulsion = 13917.026444 eV Total energy + Delta-G solvation = -2563.691560 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21910 -37.83651 -37.43387 -34.46596 -34.19668 -31.58332 -30.57550 -28.15770 -25.96337 -23.97994 -23.03387 -22.26614 -20.18965 -19.00865 -17.44644 -17.02623 -16.30352 -16.11041 -15.47324 -15.26505 -14.92751 -14.68933 -14.40170 -13.95749 -13.76119 -13.63275 -12.93356 -12.80507 -12.68669 -12.43737 -12.27105 -12.00600 -11.90940 -11.84123 -11.56986 -11.18035 -10.83394 -10.67389 -10.33835 -9.50776 -9.47067 -8.26567 -6.29203 0.26540 0.40050 1.26560 1.30125 1.36845 1.47354 2.34808 2.71808 3.08120 3.71729 3.80131 4.05652 4.15432 4.22758 4.30865 4.48700 4.52352 4.57435 4.64840 4.76817 4.85736 4.95934 5.02496 5.09206 5.18127 5.22234 5.32122 5.43378 5.48646 5.55653 5.67312 5.76028 5.78221 5.98813 6.34814 6.76755 7.35036 8.90159 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.027633 B = 0.008668 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.053919 B = 3229.411568 C = 4088.561998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 H 0.058 0.942 4 C -0.076 4.076 5 C -0.049 4.049 6 Cl -0.074 7.074 7 C -0.117 4.117 8 C -0.108 4.108 9 C -0.115 4.115 10 C -0.077 4.077 11 C -0.080 4.080 12 C -0.125 4.125 13 C 0.024 3.976 14 H 0.022 0.978 15 C -0.508 4.508 16 H 0.033 0.967 17 C 0.009 3.991 18 N -0.952 5.952 19 Si 0.945 3.055 20 H -0.262 1.262 21 H -0.302 1.302 22 H -0.243 1.243 23 H 0.036 0.964 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.152 0.848 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -7.032 -18.410 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 H 0.076 0.924 4 C -0.076 4.076 5 C -0.076 4.076 6 Cl -0.045 7.045 7 C -0.136 4.136 8 C -0.125 4.125 9 C -0.133 4.133 10 C -0.077 4.077 11 C -0.117 4.117 12 C -0.162 4.162 13 C 0.006 3.994 14 H 0.040 0.960 15 C -0.546 4.546 16 H 0.051 0.949 17 C -0.188 4.188 18 N -0.593 5.593 19 Si 0.772 3.228 20 H -0.188 1.188 21 H -0.230 1.230 22 H -0.167 1.167 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.170 0.830 27 H 0.184 0.816 28 H 0.172 0.828 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.433 -6.915 -18.247 19.813 hybrid contribution -0.104 0.082 1.069 1.077 sum 3.329 -6.833 -17.178 18.785 Atomic orbital electron populations 1.22345 0.94522 1.01929 1.00910 1.19847 0.96016 0.97817 0.91461 0.92381 1.19781 0.95964 0.98016 0.93887 1.21161 0.93403 0.97655 0.95355 1.98314 1.45934 1.62209 1.98040 1.21263 0.98362 0.97400 0.96566 1.21376 0.94702 0.97303 0.99155 1.21557 1.00808 0.99643 0.91254 1.19789 0.95125 0.96254 0.96538 1.20575 1.00438 0.98956 0.91752 1.21908 0.98343 0.98775 0.97213 1.19109 0.92589 0.95365 0.92368 0.96030 1.21289 1.36660 1.05513 0.91109 0.94850 1.25885 0.96655 1.00765 0.95467 1.70064 1.49738 1.40419 0.99084 0.85888 0.79366 0.80573 0.77020 1.18755 1.22953 1.16708 0.94481 0.90859 0.92998 0.83050 0.81574 0.82848 0.88361 0.90542 0.92575 0.93752 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 7.67 71.98 0.55 -5.06 16 2 C -0.03 -1.37 1.93 -11.65 -0.02 -1.40 16 3 H 0.06 2.59 8.11 -2.38 -0.02 2.57 16 4 C -0.08 -2.61 5.29 -19.84 -0.11 -2.72 16 5 C -0.05 -1.47 5.96 22.41 0.13 -1.34 16 6 Cl -0.07 -2.17 23.58 -2.72 -0.06 -2.24 16 7 C -0.12 -2.66 9.82 22.23 0.22 -2.44 16 8 C -0.11 -2.05 10.05 22.20 0.22 -1.83 16 9 C -0.11 -2.55 9.61 22.36 0.21 -2.33 16 10 C -0.08 -2.33 5.74 -19.86 -0.11 -2.45 16 11 C -0.08 -2.52 5.67 29.74 0.17 -2.35 16 12 C -0.12 -5.13 4.75 30.62 0.15 -4.98 16 13 C 0.02 1.14 1.08 -11.52 -0.01 1.13 16 14 H 0.02 1.04 7.11 -2.39 -0.02 1.03 16 15 C -0.51 -29.16 8.11 25.60 0.21 -28.95 16 16 H 0.03 2.13 7.92 -2.91 -0.02 2.11 16 17 C 0.01 0.50 5.45 84.65 0.46 0.96 16 18 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 19 Si 0.94 44.82 24.48 68.60 1.68 46.50 16 20 H -0.26 -11.64 6.80 99.48 0.68 -10.96 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.24 -10.64 6.53 99.48 0.65 -9.99 16 23 H 0.04 1.68 6.97 -2.39 -0.02 1.66 16 24 H 0.07 2.69 5.33 -2.38 -0.01 2.68 16 25 H 0.05 1.92 7.28 -2.39 -0.02 1.90 16 26 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 27 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.15 2.43 8.05 -2.91 -0.02 2.41 16 29 H 0.10 2.46 8.13 -2.39 -0.02 2.44 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.31 8.10 -2.38 -0.02 2.29 16 32 H 0.04 1.91 3.46 -2.39 -0.01 1.90 16 33 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -66.49 266.59 5.01 -61.49 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.02 Total: 8.01 kcal Atomic # 6 Polarization: -55.81 SS G_CDS: 2.07 Total: -53.74 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.30 Total: -60.02 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.68 Total: 46.50 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.06 Total: -2.24 kcal Total: -66.49 5.01 -61.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260584559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.283 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds