Wall clock time and date at job start Mon Mar 30 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47179 * 2 1 4 4 C 1.50696 * 109.47198 * 239.99229 * 2 1 3 5 5 H 1.07999 * 120.00566 * 275.00330 * 4 2 1 6 6 C 1.37887 * 119.99389 * 95.00636 * 4 2 1 7 7 N 1.31514 * 119.99635 * 184.91943 * 6 4 2 8 8 Si 1.86798 * 120.00003 * 4.91386 * 6 4 2 9 9 H 1.48501 * 109.46803 * 84.83935 * 8 6 4 10 10 H 1.48504 * 109.47033 * 204.83233 * 8 6 4 11 11 H 1.48497 * 109.47414 * 324.83453 * 8 6 4 12 12 N 1.46507 * 109.46716 * 119.99988 * 2 1 3 13 13 C 1.39007 * 119.99646 * 275.27140 * 12 2 1 14 14 C 1.38691 * 119.90516 * 359.45335 * 13 12 2 15 15 C 1.39447 * 119.86009 * 179.76594 * 14 13 12 16 16 C 1.37873 * 118.21291 * 0.50839 * 15 14 13 17 17 C 1.39330 * 118.62938 * 359.73314 * 16 15 14 18 18 N 1.31427 * 121.78665 * 0.02562 * 17 16 15 19 19 C 1.52208 * 115.50754 * 179.69395 * 16 15 14 20 20 S 1.83249 * 103.55853 * 17.49654 * 19 16 15 21 21 C 1.52086 * 126.06767 * 180.18585 * 15 14 13 22 22 H 1.08998 * 109.47400 * 295.02917 * 1 2 3 23 23 H 1.09005 * 109.47024 * 55.02788 * 1 2 3 24 24 H 1.09007 * 109.47478 * 175.02726 * 1 2 3 25 25 H 0.97001 * 119.99702 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00318 * 94.99899 * 12 2 1 27 27 H 1.08000 * 120.06708 * 0.02562 * 14 13 12 28 28 H 1.07997 * 119.11012 * 179.97438 * 17 16 15 29 29 H 1.08990 * 110.61008 * 136.01706 * 19 16 15 30 30 H 1.09008 * 110.60356 * 258.83056 * 19 16 15 31 31 H 1.08998 * 110.61670 * 44.34135 * 21 15 14 32 32 H 1.08998 * 110.74842 * 281.41262 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1355 -1.7856 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7822 10 1 2.1060 2.3989 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0182 -0.6907 1.1963 13 6 2.1456 0.0015 2.3950 14 6 1.8206 1.3485 2.4536 15 6 1.9441 2.0408 3.6578 16 6 2.4019 1.3525 4.7613 17 6 2.7132 0.0015 4.6236 18 7 2.5820 -0.6258 3.4761 19 6 2.5197 2.1689 6.0405 20 16 1.4869 3.6449 5.7048 21 6 1.6250 3.5107 3.8824 22 1 -0.3634 0.4348 0.9311 23 1 -0.3633 0.5891 -0.8421 24 1 -0.3634 -1.0238 -0.0891 25 1 2.9371 -0.1050 -4.2553 26 1 2.2489 -1.6318 1.1528 27 1 1.4687 1.8592 1.5694 28 1 3.0728 -0.5451 5.4828 29 1 2.1261 1.6104 6.8897 30 1 3.5562 2.4555 6.2185 31 1 0.6814 3.7759 3.4054 32 1 2.4321 4.1422 3.5111 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260603106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:42 Heat of formation + Delta-G solvation = 34.606594 kcal Electronic energy + Delta-G solvation = -15808.026275 eV Core-core repulsion = 13280.310786 eV Total energy + Delta-G solvation = -2527.715489 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16038 -36.49074 -34.40630 -32.66528 -31.22899 -29.58795 -27.96979 -26.09466 -25.34863 -22.70343 -21.38127 -20.11951 -17.87400 -17.03202 -16.24202 -15.66520 -15.20587 -15.08620 -14.54336 -14.17048 -13.56423 -13.49751 -13.45852 -12.90814 -12.65357 -12.51460 -12.06887 -11.87327 -11.64568 -11.21024 -10.94276 -10.76028 -10.58076 -10.02394 -9.55090 -9.43708 -9.27921 -9.19638 -8.80383 -7.84989 -7.07199 -6.35177 -4.39536 1.45659 1.57059 1.75540 2.14167 3.10593 3.17980 3.20683 3.81282 4.11565 4.16849 4.37964 4.75467 4.89806 5.03802 5.13449 5.21788 5.26599 5.39376 5.46862 5.76625 5.92126 6.05262 6.10690 6.31659 6.36019 6.46769 6.61038 6.86064 7.08030 7.28845 7.62132 8.05294 8.42663 8.58998 8.71013 9.24335 10.76909 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.006053 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.416899 B = 4624.798147 C = 5152.010129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.237 3.763 3 H 0.042 0.958 4 C -0.530 4.530 5 H 0.081 0.919 6 C 0.082 3.918 7 N -0.884 5.884 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.263 1.263 12 N -0.688 5.688 13 C 0.417 3.583 14 C -0.234 4.234 15 C -0.008 4.008 16 C -0.244 4.244 17 C 0.182 3.818 18 N -0.545 5.545 19 C -0.005 4.005 20 S -0.278 6.278 21 C -0.031 4.031 22 H 0.028 0.972 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.269 0.731 26 H 0.402 0.598 27 H 0.133 0.867 28 H 0.150 0.850 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 6.633 14.727 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.520 5.520 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.187 1.187 12 N -0.314 5.314 13 C 0.180 3.820 14 C -0.262 4.262 15 C -0.017 4.017 16 C -0.251 4.251 17 C 0.018 3.982 18 N -0.263 5.263 19 C -0.154 4.154 20 S -0.051 6.051 21 C -0.179 4.179 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.237 0.763 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.677 6.689 14.911 16.428 hybrid contribution 0.494 0.706 -0.909 1.253 sum -1.183 7.395 14.002 15.879 Atomic orbital electron populations 1.22352 0.98486 1.01408 0.99128 1.19235 0.90872 0.93618 0.82832 0.94000 1.20946 1.45415 0.95887 0.94562 0.90103 1.24951 0.93648 0.98580 0.95149 1.69869 1.44159 1.36247 1.01708 0.86931 0.79404 0.85885 0.77873 1.19714 1.20842 1.18723 1.45680 1.66923 1.13162 1.05597 1.18478 0.88246 0.88414 0.86894 1.21057 1.12493 0.94369 0.98254 1.20303 0.94753 0.93311 0.93334 1.20825 1.12875 0.96588 0.94857 1.22028 0.92340 0.89612 0.94269 1.67292 1.21140 1.38906 0.98914 1.22572 1.01131 0.93587 0.98063 1.87647 1.69836 1.40208 1.07380 1.22893 1.06108 0.95203 0.93682 0.95306 0.92603 0.92850 0.92050 0.76261 0.84933 0.83241 0.87827 0.88669 0.86996 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.39 37.16 0.35 -2.75 16 2 C 0.24 5.21 1.91 -69.08 -0.13 5.07 16 3 H 0.04 0.94 3.60 -51.93 -0.19 0.75 16 4 C -0.53 -13.75 9.05 -34.44 -0.31 -14.06 16 5 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.88 -25.32 13.96 55.43 0.77 -24.55 16 8 Si 0.87 19.92 26.99 -169.99 -4.59 15.33 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.26 -5.60 6.82 56.52 0.39 -5.22 16 12 N -0.69 -13.94 5.24 -55.18 -0.29 -14.23 16 13 C 0.42 7.88 7.62 -155.19 -1.18 6.69 16 14 C -0.23 -4.10 8.80 -38.96 -0.34 -4.44 16 15 C -0.01 -0.12 5.94 -103.62 -0.62 -0.74 16 16 C -0.24 -3.38 5.94 -103.60 -0.62 -3.99 16 17 C 0.18 2.62 11.08 -17.32 -0.19 2.43 16 18 N -0.55 -9.62 10.39 -12.34 -0.13 -9.74 16 19 C 0.00 -0.05 7.32 36.75 0.27 0.21 16 20 S -0.28 -3.45 23.43 -107.50 -2.52 -5.97 16 21 C -0.03 -0.39 7.33 36.69 0.27 -0.12 16 22 H 0.03 0.52 7.78 -51.93 -0.40 0.12 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.40 8.03 8.72 -40.82 -0.36 7.67 16 27 H 0.13 2.35 6.16 -52.49 -0.32 2.02 16 28 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 280.43 15.07 4.23 4.23 Total: -1.00 -28.15 280.43 -8.93 -37.08 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.80 Total: 7.45 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.60 Total: -9.60 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.36 Total: -48.52 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.59 Total: 15.33 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.52 Total: -5.97 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.15 -8.93 -37.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260603106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.687 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds