Wall clock time and date at job start Mon Mar 30 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47088 * 2 1 4 4 C 1.50694 * 109.47272 * 119.99936 * 2 1 3 5 5 H 1.08004 * 119.99565 * 119.99692 * 4 2 1 6 6 C 1.37873 * 120.00428 * 300.00390 * 4 2 1 7 7 N 1.31513 * 120.00393 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99900 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46996 * 90.00285 * 8 6 4 10 10 H 1.48504 * 109.47572 * 210.00139 * 8 6 4 11 11 H 1.48497 * 109.47148 * 330.00307 * 8 6 4 12 12 C 1.50699 * 109.46961 * 240.00599 * 2 1 3 13 13 C 1.38264 * 119.99353 * 120.00160 * 12 2 1 14 14 C 1.38219 * 120.02351 * 180.02562 * 13 12 2 15 15 C 1.38241 * 120.01488 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00374 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.50321 * 60.00118 * 16 15 14 18 18 C 1.52997 * 117.50247 * 351.37218 * 16 15 14 19 19 C 1.38329 * 119.98479 * 0.25193 * 15 14 13 20 20 Cl 1.73604 * 120.01083 * 179.70289 * 19 15 14 21 21 C 1.38190 * 119.99059 * 300.01395 * 12 2 1 22 22 H 1.08999 * 109.47066 * 299.99567 * 1 2 3 23 23 H 1.08996 * 109.47212 * 59.99584 * 1 2 3 24 24 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 25 25 H 0.96998 * 120.00286 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.98711 * 0.02562 * 13 12 2 27 27 H 1.07999 * 119.99611 * 179.97438 * 14 13 12 28 28 H 1.09002 * 115.55636 * 205.68517 * 16 15 14 29 29 H 1.08990 * 117.49990 * 145.01584 * 17 16 15 30 30 H 1.09004 * 117.49237 * 359.97438 * 17 16 15 31 31 H 1.08999 * 117.49685 * 0.02562 * 18 16 15 32 32 H 1.08999 * 117.52022 * 214.97066 * 18 16 15 33 33 H 1.08001 * 120.00954 * 359.96696 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4924 12 6 2.0323 -0.7103 -1.2305 13 6 2.8272 -0.0381 -2.1405 14 6 3.2878 -0.6888 -3.2696 15 6 2.9544 -2.0123 -3.4894 16 6 3.4562 -2.7213 -4.7209 17 6 4.9711 -2.8274 -4.9071 18 6 4.1569 -1.8762 -5.7866 19 6 2.1553 -2.6839 -2.5817 20 17 1.7297 -4.3436 -2.8611 21 6 1.6981 -2.0332 -1.4493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.9041 -0.5275 4.4375 26 1 3.0883 0.9957 -1.9690 27 1 3.9083 -0.1633 -3.9803 28 1 2.8473 -3.5584 -5.0625 29 1 5.3589 -3.7341 -5.3712 30 1 5.6048 -2.3839 -4.1390 31 1 4.2553 -0.8074 -5.5968 32 1 4.0094 -2.1571 -6.8293 33 1 1.0774 -2.5582 -0.7383 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260606260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:56 Heat of formation + Delta-G solvation = 33.595540 kcal Electronic energy + Delta-G solvation = -15706.947365 eV Core-core repulsion = 13144.851576 eV Total energy + Delta-G solvation = -2562.095789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51767 -37.00175 -36.16330 -34.17422 -31.66116 -30.29238 -28.91200 -25.14343 -23.98916 -22.60646 -21.94280 -20.88176 -19.47136 -16.78056 -16.54081 -15.67660 -15.00293 -14.63418 -14.21825 -13.87498 -13.31155 -13.13177 -12.76070 -12.55787 -12.23632 -11.77396 -11.56623 -11.38274 -11.11641 -11.03089 -10.91754 -10.68014 -10.40923 -10.23200 -10.16633 -9.99418 -9.42284 -9.18036 -8.62243 -8.32439 -7.84981 -6.12191 -4.12928 1.63930 1.76467 2.52897 3.23673 3.33580 3.36285 3.79828 4.24938 4.35681 4.63345 4.88706 5.04085 5.11608 5.20959 5.39089 5.52819 5.60350 5.79192 5.80000 5.90527 6.07175 6.13235 6.16884 6.21180 6.33563 6.53685 6.59688 6.73204 6.81407 6.93666 7.00282 7.34830 7.47486 7.66599 8.44692 8.91613 9.48090 11.00505 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.031313 B = 0.006067 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.989705 B = 4613.952862 C = 4972.965233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 H 0.038 0.962 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.266 1.266 12 C -0.017 4.017 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.071 4.071 16 C -0.110 4.110 17 C -0.169 4.169 18 C -0.179 4.179 19 C -0.028 4.028 20 Cl -0.086 7.086 21 C -0.093 4.093 22 H 0.042 0.958 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 -1.321 -15.889 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.056 0.944 4 C -0.549 4.549 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.191 1.191 12 C -0.017 4.017 13 C -0.140 4.140 14 C -0.131 4.131 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.206 4.206 18 C -0.216 4.216 19 C -0.054 4.054 20 Cl -0.057 7.057 21 C -0.112 4.112 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.158 -1.480 -15.710 15.822 hybrid contribution -0.612 0.570 0.330 0.899 sum 0.546 -0.910 -15.380 15.416 Atomic orbital electron populations 1.22178 0.98198 1.01081 0.98782 1.18370 0.92089 0.96195 0.91402 0.94373 1.20933 1.32378 1.13673 0.87963 0.90504 1.24991 0.95646 0.96614 0.95761 1.69886 1.45324 1.40257 0.97961 0.86844 0.80624 0.83733 0.76955 1.20533 1.22472 1.19142 1.20189 0.93584 0.92911 0.95060 1.21181 0.98506 1.00260 0.94015 1.20828 1.00920 0.93355 0.98040 1.18727 0.99423 0.93918 0.95107 1.20968 0.95250 1.01486 0.95148 1.22999 0.93210 1.01537 1.02852 1.23046 1.04655 0.97897 0.95968 1.20691 1.02006 0.85219 0.97502 1.98313 1.92430 1.18871 1.96113 1.20990 1.00406 0.94721 0.95091 0.93912 0.94967 0.92641 0.92526 0.85916 0.85950 0.86876 0.88706 0.88518 0.88402 0.88728 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.49 37.16 0.32 -2.74 16 2 C 0.04 0.87 2.07 -92.93 -0.19 0.68 16 3 H 0.04 0.87 6.93 -51.93 -0.36 0.51 16 4 C -0.51 -13.94 8.82 -34.44 -0.30 -14.24 16 5 H 0.08 2.30 7.85 -52.48 -0.41 1.89 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 8 Si 0.89 21.42 24.37 -169.99 -4.14 17.27 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.10 6.53 56.52 0.37 -5.73 16 12 C -0.02 -0.34 4.74 -104.63 -0.50 -0.84 16 13 C -0.12 -2.11 9.67 -39.58 -0.38 -2.50 16 14 C -0.11 -1.73 9.30 -39.59 -0.37 -2.10 16 15 C -0.07 -1.11 5.61 -104.59 -0.59 -1.70 16 16 C -0.11 -1.41 5.56 -91.77 -0.51 -1.92 16 17 C -0.17 -1.87 10.16 -26.73 -0.27 -2.14 16 18 C -0.18 -1.85 9.86 -26.73 -0.26 -2.11 16 19 C -0.03 -0.48 6.31 -39.50 -0.25 -0.73 16 20 Cl -0.09 -1.33 27.41 -51.86 -1.42 -2.75 16 21 C -0.09 -1.82 8.49 -39.55 -0.34 -2.16 16 22 H 0.04 0.94 3.27 -51.93 -0.17 0.77 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 1.13 7.39 -51.93 -0.38 0.75 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.12 1.93 7.95 -52.49 -0.42 1.52 16 27 H 0.12 1.53 6.02 -52.49 -0.32 1.21 16 28 H 0.11 1.42 7.15 -51.93 -0.37 1.05 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 0.97 6.18 -51.93 -0.32 0.65 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.14 2.75 7.58 -52.49 -0.40 2.35 16 LS Contribution 281.97 15.07 4.25 4.25 Total: -1.00 -28.81 281.97 -8.30 -37.12 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.02 Total: 0.88 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -3.74 Total: -30.58 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.27 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.42 Total: -2.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.81 -8.30 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260606260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.712 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds