Wall clock time and date at job start Mon Mar 30 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47088 * 2 1 4 4 C 1.50694 * 109.47272 * 119.99936 * 2 1 3 5 5 H 1.08004 * 119.99565 * 119.99692 * 4 2 1 6 6 C 1.37873 * 120.00428 * 300.00390 * 4 2 1 7 7 N 1.31513 * 120.00393 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99900 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46996 * 90.00285 * 8 6 4 10 10 H 1.48504 * 109.47572 * 210.00139 * 8 6 4 11 11 H 1.48497 * 109.47148 * 330.00307 * 8 6 4 12 12 C 1.50699 * 109.46961 * 240.00599 * 2 1 3 13 13 C 1.38264 * 119.99353 * 120.00160 * 12 2 1 14 14 C 1.38219 * 120.02351 * 180.02562 * 13 12 2 15 15 C 1.38241 * 120.01488 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00374 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.50321 * 60.00118 * 16 15 14 18 18 C 1.52997 * 117.50247 * 351.37218 * 16 15 14 19 19 C 1.38329 * 119.98479 * 0.25193 * 15 14 13 20 20 Cl 1.73604 * 120.01083 * 179.70289 * 19 15 14 21 21 C 1.38190 * 119.99059 * 300.01395 * 12 2 1 22 22 H 1.08999 * 109.47066 * 299.99567 * 1 2 3 23 23 H 1.08996 * 109.47212 * 59.99584 * 1 2 3 24 24 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 25 25 H 0.96998 * 120.00286 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.98711 * 0.02562 * 13 12 2 27 27 H 1.07999 * 119.99611 * 179.97438 * 14 13 12 28 28 H 1.09002 * 115.55636 * 205.68517 * 16 15 14 29 29 H 1.08990 * 117.49990 * 145.01584 * 17 16 15 30 30 H 1.09004 * 117.49237 * 359.97438 * 17 16 15 31 31 H 1.08999 * 117.49685 * 0.02562 * 18 16 15 32 32 H 1.08999 * 117.52022 * 214.97066 * 18 16 15 33 33 H 1.08001 * 120.00954 * 359.96696 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4924 12 6 2.0323 -0.7103 -1.2305 13 6 2.8272 -0.0381 -2.1405 14 6 3.2878 -0.6888 -3.2696 15 6 2.9544 -2.0123 -3.4894 16 6 3.4562 -2.7213 -4.7209 17 6 4.9711 -2.8274 -4.9071 18 6 4.1569 -1.8762 -5.7866 19 6 2.1553 -2.6839 -2.5817 20 17 1.7297 -4.3436 -2.8611 21 6 1.6981 -2.0332 -1.4493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.9041 -0.5275 4.4375 26 1 3.0883 0.9957 -1.9690 27 1 3.9083 -0.1633 -3.9803 28 1 2.8473 -3.5584 -5.0625 29 1 5.3589 -3.7341 -5.3712 30 1 5.6048 -2.3839 -4.1390 31 1 4.2553 -0.8074 -5.5968 32 1 4.0094 -2.1571 -6.8293 33 1 1.0774 -2.5582 -0.7383 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260606260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:56 Heat of formation + Delta-G solvation = 18.814613 kcal Electronic energy + Delta-G solvation = -15707.588314 eV Core-core repulsion = 13144.851576 eV Total energy + Delta-G solvation = -2562.736738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79940 -38.16636 -37.45477 -35.84113 -33.61276 -31.63320 -30.35346 -27.10774 -25.38095 -23.72970 -22.99008 -22.30904 -20.87211 -18.72627 -17.84513 -17.03753 -16.63913 -16.04365 -15.44140 -15.17492 -14.93145 -14.53869 -14.40336 -14.02884 -13.96552 -13.26108 -12.91264 -12.83919 -12.40522 -12.32279 -12.26329 -12.07772 -11.92908 -11.59798 -11.49133 -11.22953 -11.18617 -11.09733 -10.73150 -9.67758 -9.19747 -8.28975 -6.33848 0.29252 0.41968 1.21593 1.32704 1.37384 1.48301 2.32925 2.64684 3.06439 3.15231 3.60500 3.86202 4.01733 4.09067 4.18783 4.28973 4.48041 4.53229 4.58260 4.66163 4.77322 4.85515 4.90945 4.99995 5.11295 5.13619 5.19373 5.30867 5.42153 5.43129 5.54435 5.61705 5.90408 5.96565 6.31147 6.72342 7.30723 8.87675 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.031313 B = 0.006067 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.989705 B = 4613.952862 C = 4972.965233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 H 0.043 0.957 4 C -0.510 4.510 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.300 1.300 11 H -0.241 1.241 12 C -0.048 4.048 13 C -0.123 4.123 14 C -0.106 4.106 15 C -0.062 4.062 16 C -0.136 4.136 17 C -0.166 4.166 18 C -0.157 4.157 19 C -0.040 4.040 20 Cl -0.075 7.075 21 C -0.111 4.111 22 H 0.035 0.965 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.266 0.734 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 0.163 -18.879 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.021 3.979 3 H 0.061 0.939 4 C -0.548 4.548 5 H 0.048 0.952 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.228 1.228 11 H -0.165 1.165 12 C -0.048 4.048 13 C -0.141 4.141 14 C -0.123 4.123 15 C -0.063 4.063 16 C -0.154 4.154 17 C -0.203 4.203 18 C -0.194 4.194 19 C -0.067 4.067 20 Cl -0.046 7.046 21 C -0.130 4.130 22 H 0.054 0.946 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.176 0.824 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.276 0.000 -18.732 18.776 hybrid contribution -0.553 -0.041 1.156 1.283 sum 0.723 -0.041 -17.576 17.591 Atomic orbital electron populations 1.22100 0.96824 1.01177 0.99854 1.18263 0.93258 0.95867 0.90547 0.93942 1.21177 1.31042 1.12286 0.90282 0.95157 1.25883 0.97265 1.00079 0.95276 1.70049 1.47682 1.42620 0.98641 0.85810 0.78942 0.79955 0.77482 1.19417 1.22816 1.16467 1.20037 0.96021 0.93394 0.95366 1.21395 0.97532 1.01111 0.94016 1.21188 1.00288 0.93155 0.97718 1.19129 0.97651 0.94151 0.95382 1.20993 0.96549 1.02667 0.95188 1.23083 0.91571 1.02662 1.02970 1.23187 1.01850 0.98017 0.96333 1.20788 1.02563 0.85980 0.97355 1.98307 1.92403 1.17907 1.95992 1.20848 1.01311 0.94968 0.95854 0.94644 0.91788 0.93223 0.92537 0.84177 0.82371 0.86830 0.87130 0.89164 0.87532 0.86609 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.85 8.49 71.98 0.61 -5.24 16 2 C 0.04 1.79 2.07 -12.29 -0.03 1.76 16 3 H 0.04 1.88 6.93 -2.39 -0.02 1.86 16 4 C -0.51 -28.82 8.82 25.60 0.23 -28.59 16 5 H 0.03 1.93 7.85 -2.91 -0.02 1.91 16 6 C 0.01 0.69 5.45 84.65 0.46 1.15 16 7 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 8 Si 0.95 44.20 24.37 68.60 1.67 45.87 16 9 H -0.27 -11.92 6.87 99.48 0.68 -11.23 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 11 H -0.24 -10.13 6.53 99.48 0.65 -9.48 16 12 C -0.05 -1.92 4.74 -19.87 -0.09 -2.02 16 13 C -0.12 -4.04 9.67 22.27 0.22 -3.82 16 14 C -0.11 -2.92 9.30 22.27 0.21 -2.72 16 15 C -0.06 -1.82 5.61 -19.84 -0.11 -1.94 16 16 C -0.14 -3.08 5.56 -11.54 -0.06 -3.14 16 17 C -0.17 -3.11 10.16 30.60 0.31 -2.80 16 18 C -0.16 -2.56 9.86 30.60 0.30 -2.25 16 19 C -0.04 -1.39 6.31 22.32 0.14 -1.25 16 20 Cl -0.07 -2.30 27.41 -2.72 -0.07 -2.38 16 21 C -0.11 -4.43 8.49 22.29 0.19 -4.24 16 22 H 0.04 1.48 3.27 -2.39 -0.01 1.48 16 23 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.05 2.05 7.39 -2.39 -0.02 2.03 16 25 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.14 4.04 7.95 -2.91 -0.02 4.01 16 27 H 0.16 3.20 6.02 -2.91 -0.02 3.19 16 28 H 0.11 2.57 7.15 -2.39 -0.02 2.56 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.11 1.56 6.18 -2.39 -0.01 1.55 16 32 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 4.86 7.58 -2.91 -0.02 4.84 16 Total: -1.00 -64.73 281.97 5.30 -59.43 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.03 Total: 11.36 kcal Atomic # 6 Polarization: -57.47 SS G_CDS: 2.37 Total: -55.10 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.30 Total: -59.18 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.87 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.07 Total: -2.38 kcal Total: -64.73 5.30 -59.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260606260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.245 kcal (2) G-P(sol) polarization free energy of solvation -64.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds