Wall clock time and date at job start Mon Mar 30 2020 05:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47378 * 2 1 4 4 C 1.50701 * 109.47101 * 119.99259 * 2 1 3 5 5 H 1.08001 * 119.99644 * 119.99916 * 4 2 1 6 6 C 1.37875 * 120.00562 * 300.00354 * 4 2 1 7 7 N 1.31520 * 119.99407 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46848 * 89.99771 * 8 6 4 10 10 H 1.48501 * 109.47197 * 210.00191 * 8 6 4 11 11 H 1.48499 * 109.47116 * 330.00207 * 8 6 4 12 12 C 1.50701 * 109.47584 * 239.99466 * 2 1 3 13 13 C 1.38710 * 120.04489 * 299.92403 * 12 2 1 14 14 C 1.38330 * 119.99056 * 180.02562 * 13 12 2 15 15 Cl 1.73597 * 120.04855 * 179.97438 * 14 13 12 16 16 C 1.38265 * 119.90289 * 0.02562 * 14 13 12 17 17 C 1.38432 * 120.20535 * 359.97278 * 16 14 13 18 18 C 1.38462 * 119.88138 * 119.99507 * 12 2 1 19 19 C 1.51372 * 130.38548 * 359.96959 * 18 12 2 20 20 C 1.54353 * 105.17231 * 162.82922 * 19 18 12 21 21 C 1.51370 * 130.38117 * 180.02562 * 17 16 14 22 22 H 1.08996 * 109.47259 * 300.00479 * 1 2 3 23 23 H 1.08997 * 109.46811 * 60.00185 * 1 2 3 24 24 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 25 25 H 0.97004 * 119.99601 * 180.02562 * 7 6 4 26 26 H 1.08005 * 119.97604 * 0.06582 * 13 12 2 27 27 H 1.07999 * 119.89644 * 180.02562 * 16 14 13 28 28 H 1.08999 * 110.30387 * 43.90081 * 19 18 12 29 29 H 1.09003 * 110.38403 * 281.78663 * 19 18 12 30 30 H 1.09004 * 110.81305 * 268.12819 * 20 19 18 31 31 H 1.08995 * 110.98731 * 144.66239 * 20 19 18 32 32 H 1.09002 * 110.30562 * 78.26731 * 21 17 16 33 33 H 1.08997 * 110.30096 * 316.21177 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.6296 -0.5455 4.4124 10 1 1.3430 -0.9489 5.1121 11 1 2.4859 -2.5659 3.7122 12 6 2.0324 -0.7105 -1.2304 13 6 1.6993 -2.0390 -1.4499 14 6 2.1615 -2.6902 -2.5794 15 17 1.7460 -4.3530 -2.8553 16 6 2.9558 -2.0152 -3.4877 17 6 3.2896 -0.6893 -3.2707 18 6 2.8283 -0.0353 -2.1402 19 6 3.3289 1.3933 -2.1347 20 6 4.4952 1.4165 -3.1455 21 6 4.1302 0.2586 -4.0989 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7094 1.1621 3.4843 26 1 1.0785 -2.5642 -0.7391 27 1 3.3163 -2.5236 -4.3697 28 1 3.6842 1.6657 -1.1409 29 1 2.5390 2.0736 -2.4531 30 1 5.4446 1.2233 -2.6460 31 1 4.5276 2.3645 -3.6824 32 1 3.5551 0.6326 -4.9460 33 1 5.0331 -0.2427 -4.4474 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260632149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:52 Heat of formation + Delta-G solvation = -7.425746 kcal Electronic energy + Delta-G solvation = -16011.556048 eV Core-core repulsion = 13447.681442 eV Total energy + Delta-G solvation = -2563.874606 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73515 -36.42887 -35.42742 -33.96228 -31.62730 -28.89692 -28.43863 -26.61197 -25.15672 -22.75954 -21.18787 -20.43926 -19.02891 -16.28881 -15.96678 -15.45112 -14.94143 -14.67838 -14.27021 -13.06752 -12.97111 -12.81699 -12.56706 -12.38498 -11.72172 -11.62500 -11.36001 -11.14850 -10.96912 -10.94452 -10.88038 -10.78996 -10.61647 -10.35877 -10.11162 -10.06483 -9.38555 -9.04067 -8.40066 -7.97598 -7.78249 -6.04486 -4.11254 1.73830 1.91866 2.55723 3.28394 3.35308 3.39577 4.18126 4.42564 4.79394 4.91660 5.23025 5.26819 5.43219 5.52979 5.62208 5.82876 5.93277 5.98351 6.05281 6.12383 6.31010 6.44826 6.46655 6.60100 6.75602 6.82186 6.96273 6.98765 7.14248 7.25980 7.49785 7.68291 7.90636 8.05083 8.34620 8.91114 9.53637 11.01083 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.008217 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.769639 B = 3406.945553 C = 4401.689706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.072 3.928 3 H 0.040 0.960 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.007 4.007 13 C -0.101 4.101 14 C -0.035 4.035 15 Cl -0.092 7.092 16 C -0.127 4.127 17 C -0.097 4.097 18 C -0.100 4.100 19 C -0.079 4.079 20 C -0.120 4.120 21 C -0.075 4.075 22 H 0.087 0.913 23 H 0.008 0.992 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 -1.473 -11.277 12.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.058 0.942 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.007 4.007 13 C -0.119 4.119 14 C -0.062 4.062 15 Cl -0.063 7.063 16 C -0.145 4.145 17 C -0.097 4.097 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.157 4.157 21 C -0.112 4.112 22 H 0.105 0.895 23 H 0.028 0.972 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.152 0.848 27 H 0.136 0.864 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.725 -1.506 -11.161 11.862 hybrid contribution 0.234 -0.778 0.882 1.199 sum 3.959 -2.284 -10.279 11.250 Atomic orbital electron populations 1.21797 0.97513 0.99402 1.00356 1.17902 0.92894 0.95661 0.88202 0.94172 1.21100 1.31284 1.12438 0.89805 0.92469 1.24939 0.94971 0.94989 0.98907 1.69884 1.36571 1.22846 1.23471 0.86593 0.78601 0.80219 0.82658 1.20666 1.21179 1.19821 1.20354 0.92497 0.92438 0.95447 1.21023 1.00804 0.94590 0.95529 1.20701 1.02426 0.85026 0.98015 1.98316 1.92822 1.18823 1.96340 1.20111 1.01074 0.93710 0.99639 1.20425 0.99366 0.93230 0.96686 1.20592 0.98552 0.96160 0.94671 1.20972 0.97076 0.93201 1.00346 1.22300 0.98735 0.97868 0.96837 1.20973 0.98256 0.94578 0.97413 0.89472 0.97250 0.95225 0.92912 0.84840 0.86383 0.90025 0.90611 0.91147 0.90970 0.90675 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.78 37.16 0.33 -2.83 16 2 C 0.07 1.75 2.47 -92.92 -0.23 1.52 16 3 H 0.04 1.03 6.88 -51.93 -0.36 0.68 16 4 C -0.51 -13.59 8.25 -34.44 -0.28 -13.87 16 5 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C -0.01 -0.15 4.75 -104.36 -0.50 -0.65 16 13 C -0.10 -2.05 8.53 -39.37 -0.34 -2.39 16 14 C -0.04 -0.64 6.32 -39.54 -0.25 -0.89 16 15 Cl -0.09 -1.46 28.96 -51.86 -1.50 -2.96 16 16 C -0.13 -2.10 9.82 -39.50 -0.39 -2.48 16 17 C -0.10 -1.61 6.15 -104.12 -0.64 -2.25 16 18 C -0.10 -1.88 6.02 -104.11 -0.63 -2.51 16 19 C -0.08 -1.28 5.95 -26.84 -0.16 -1.44 16 20 C -0.12 -1.52 7.08 -25.31 -0.18 -1.70 16 21 C -0.08 -0.97 6.76 -26.84 -0.18 -1.15 16 22 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 24 H 0.03 0.67 7.40 -51.93 -0.38 0.29 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.13 2.79 7.59 -52.48 -0.40 2.40 16 27 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.08 1.42 7.76 -51.93 -0.40 1.01 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 285.86 15.07 4.31 4.31 Total: -1.00 -27.37 285.86 -9.48 -36.84 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.35 Total: -1.14 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.54 Total: -29.02 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.63 Total: -24.07 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.50 Total: -2.96 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.37 -9.48 -36.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260632149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.417 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds