Wall clock time and date at job start Mon Mar 30 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.25213 * 2 1 4 4 C 1.50637 * 109.25330 * 119.46702 * 2 1 3 5 5 C 1.38922 * 117.73911 * 317.97553 * 4 2 1 6 6 C 1.37903 * 120.56745 * 180.21329 * 5 4 2 7 7 C 1.38385 * 119.75564 * 0.06320 * 6 5 4 8 8 Cl 1.73602 * 120.13073 * 179.90511 * 7 6 5 9 9 C 1.38051 * 119.74355 * 359.87935 * 7 6 5 10 10 C 1.37667 * 122.56125 * 138.02415 * 4 2 1 11 11 C 1.50638 * 122.56155 * 359.26525 * 10 4 2 12 12 C 1.52734 * 110.58628 * 17.79477 * 11 10 4 13 13 C 1.52735 * 109.22168 * 240.54926 * 2 1 3 14 14 H 1.08999 * 109.67873 * 308.35965 * 13 2 1 15 15 C 1.50702 * 109.67903 * 68.90665 * 13 2 1 16 16 H 1.08008 * 120.00133 * 359.97438 * 15 13 2 17 17 C 1.37877 * 120.00063 * 180.02562 * 15 13 2 18 18 N 1.31515 * 119.99765 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00043 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46915 * 60.00046 * 19 17 15 21 21 H 1.48502 * 109.46802 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47178 * 299.99884 * 19 17 15 23 23 H 1.09006 * 109.47053 * 300.00637 * 1 2 3 24 24 H 1.09002 * 109.46728 * 59.99662 * 1 2 3 25 25 H 1.08993 * 109.47578 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.71905 * 0.23980 * 5 4 2 27 27 H 1.07995 * 120.12611 * 180.02562 * 6 5 4 28 28 H 1.08001 * 119.73405 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.25240 * 138.07709 * 11 10 4 30 30 H 1.09000 * 109.25700 * 257.54683 * 11 10 4 31 31 H 1.08994 * 109.68518 * 68.61682 * 12 11 10 32 32 H 1.09009 * 109.67967 * 189.12745 * 12 11 10 33 33 H 0.97004 * 119.99807 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0291 0.0000 4 6 2.0267 -0.6996 1.2382 5 6 1.3776 -0.4314 2.4368 6 6 1.7869 -1.0362 3.6066 7 6 2.8540 -1.9171 3.5874 8 17 3.3789 -2.6821 5.0548 9 6 3.4993 -2.1855 2.3969 10 6 3.0854 -1.5794 1.2178 11 6 3.8253 -1.9284 -0.0471 12 6 3.5503 -0.8909 -1.1338 13 6 2.0328 -0.7091 -1.2558 14 1 1.5522 -1.6834 -1.3446 15 6 1.7177 0.1255 -2.4705 16 1 1.2074 1.0708 -2.3586 17 6 2.0799 -0.3182 -3.7246 18 7 2.7008 -1.4695 -3.8609 19 14 1.6886 0.7159 -5.2303 20 1 2.3562 2.0370 -5.1104 21 1 2.1795 0.0224 -6.4482 22 1 0.2198 0.9106 -5.3290 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.5450 0.2564 2.4526 27 1 1.2769 -0.8229 4.5343 28 1 4.3324 -2.8726 2.3822 29 1 4.8952 -1.9581 0.1589 30 1 3.4990 -2.9082 -0.3957 31 1 4.0131 0.0576 -0.8613 32 1 3.9566 -1.2380 -2.0839 33 1 2.9559 -1.7815 -4.7432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260704109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:58 Heat of formation + Delta-G solvation = -21.054748 kcal Electronic energy + Delta-G solvation = -16084.380689 eV Core-core repulsion = 13519.915086 eV Total energy + Delta-G solvation = -2564.465603 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.08908 -38.03840 -36.88789 -34.48282 -34.27424 -30.86988 -30.50721 -27.93238 -26.11583 -23.90336 -23.03808 -22.08222 -20.05603 -18.53571 -17.48707 -16.85638 -16.22338 -16.15040 -15.19600 -14.93890 -14.71220 -14.41612 -14.21307 -13.78891 -13.45381 -13.24638 -12.84545 -12.76436 -12.61644 -12.47635 -12.41255 -12.07730 -11.93158 -11.72312 -11.59528 -11.53903 -10.74938 -10.55108 -10.34327 -9.70326 -9.30562 -8.03997 -6.15987 0.27860 0.39094 1.18594 1.44882 1.45149 1.52302 2.46760 2.70971 3.23951 3.82410 3.94195 4.03679 4.30570 4.33041 4.38616 4.48469 4.63261 4.70509 4.79585 4.88493 4.99892 5.11593 5.15777 5.25552 5.31958 5.35059 5.42921 5.47977 5.53644 5.68456 5.91110 5.94881 6.03938 6.16043 6.44540 6.94715 7.51224 9.00729 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.046308 B = 0.005531 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.495624 B = 5061.608882 C = 5545.229177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.047 4.047 3 H 0.067 0.933 4 C -0.071 4.071 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.046 4.046 8 Cl -0.071 7.071 9 C -0.119 4.119 10 C -0.072 4.072 11 C -0.074 4.074 12 C -0.108 4.108 13 C 0.057 3.943 14 H -0.006 1.006 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.947 3.053 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.272 1.272 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 0.311 13.997 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.065 4.065 3 H 0.085 0.915 4 C -0.071 4.071 5 C -0.128 4.128 6 C -0.134 4.134 7 C -0.073 4.073 8 Cl -0.043 7.043 9 C -0.138 4.138 10 C -0.073 4.073 11 C -0.111 4.111 12 C -0.146 4.146 13 C 0.038 3.962 14 H 0.012 0.988 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.774 3.226 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.197 1.197 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.169 0.831 27 H 0.172 0.828 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.457 0.124 13.995 14.003 hybrid contribution 0.087 0.138 -1.144 1.155 sum -0.370 0.262 12.852 12.860 Atomic orbital electron populations 1.21733 0.93981 1.01003 1.01633 1.20084 0.96338 0.98226 0.91822 0.91454 1.20126 0.94753 0.96284 0.95960 1.21412 1.00350 1.00288 0.90735 1.21176 0.96053 0.96474 0.99667 1.20857 0.99011 0.99956 0.87466 1.98339 1.90188 1.80709 1.35024 1.21139 1.01116 1.01062 0.90484 1.19816 0.96123 0.96421 0.94904 1.20464 0.98923 0.99429 0.92251 1.21478 0.99368 0.96042 0.97704 1.18597 0.92126 0.94112 0.91349 0.98758 1.21499 1.36917 1.05582 0.92044 0.92608 1.25670 0.95240 0.96023 1.01541 1.70014 1.41174 1.21039 1.23492 0.85778 0.78639 0.79066 0.79159 1.19766 1.21391 1.19749 0.90852 0.93037 0.94148 0.83132 0.82756 0.84401 0.90527 0.92127 0.95026 0.91618 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.56 71.98 0.62 -3.79 16 2 C -0.05 -1.84 2.18 -11.65 -0.03 -1.86 16 3 H 0.07 2.70 8.11 -2.39 -0.02 2.68 16 4 C -0.07 -2.49 5.43 -19.86 -0.11 -2.60 16 5 C -0.11 -3.08 9.04 22.35 0.20 -2.88 16 6 C -0.12 -2.90 9.84 22.23 0.22 -2.68 16 7 C -0.05 -1.25 6.31 22.26 0.14 -1.11 16 8 Cl -0.07 -1.66 28.96 -2.72 -0.08 -1.74 16 9 C -0.12 -3.59 9.39 22.38 0.21 -3.38 16 10 C -0.07 -2.56 5.74 -19.86 -0.11 -2.67 16 11 C -0.07 -2.85 5.67 29.74 0.17 -2.68 16 12 C -0.11 -5.02 5.15 30.61 0.16 -4.86 16 13 C 0.06 2.75 1.53 -11.52 -0.02 2.73 16 14 H -0.01 -0.32 8.08 -2.39 -0.02 -0.33 16 15 C -0.52 -27.71 7.86 25.60 0.20 -27.51 16 16 H 0.06 2.88 7.33 -2.91 -0.02 2.86 16 17 C 0.01 0.74 5.28 84.65 0.45 1.18 16 18 N -0.92 -52.17 11.40 21.45 0.24 -51.93 16 19 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H 0.07 1.98 6.38 -2.38 -0.02 1.97 16 24 H 0.05 1.92 7.21 -2.39 -0.02 1.90 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.15 3.48 6.32 -2.91 -0.02 3.46 16 27 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 28 H 0.14 3.69 8.05 -2.91 -0.02 3.67 16 29 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.03 1.43 8.10 -2.39 -0.02 1.42 16 32 H 0.07 3.47 6.02 -2.38 -0.01 3.45 16 33 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -57.33 279.58 5.39 -51.94 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.10 Total: 8.98 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 2.10 Total: -52.12 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.24 Total: -51.93 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -57.33 5.39 -51.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.884 kcal (2) G-P(sol) polarization free energy of solvation -57.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds